Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000100 - 0 1 1 + 48 45 93 000104 C 1 2 3 G 45 44 89 000108 G 5 2 7 T 43 44 87 000147 C 0 9 9 T 48 35 83 000279 A 2 0 2 G 46 46 92 000385 A 1 0 1 G 47 44 91 001065 T 4 0 4 A 44 42 86 001161 G 2 0 2 C 46 42 88 001371 C 1 0 1 G 47 46 93 001438 T 2 0 2 C 46 46 92 001509 C 0 1 1 A 44 45 89 001511 C 6 10 16 T 36 36 72 001724 G 3 0 3 A 41 46 87 001792 + 8 10 18 - 34 34 68 001852 - 1 10 11 + 29 34 63 002099 A 22 20 42 G 26 26 52 002284 C 1 0 1 G 45 38 83 002385 C 0 3 3 T 46 37 83 002400 C 2 0 2 T 44 40 84 002417 G 0 9 9 T 46 31 77 002566 + 2 0 2 - 44 40 84 002960 C 6 10 16 G 38 36 74 003158 A 1 0 1 G 43 46 89 003381 A 28 19 47 G 20 27 47 003449 C 2 0 2 T 46 46 92 003517 C 4 0 4 G 38 44 82 003566 A 1 6 7 G 41 38 79 003785 G 1 0 1 C 41 42 83 008710 A 7 10 17 G 41 36 77 032139 A 1 0 1 G 43 46 89 032314 T 8 5 13 C 36 41 77 032445 C 23 5 28 T 21 41 62 032549 G 1 0 1 A 43 46 89 033490 C 3 0 3 G 45 46 91 033707 G 24 6 30 A 24 40 64 034234 C 9 4 13 T 37 40 77 034255 G 2 0 2 A 44 44 88 034334 + 3 0 3 - 33 36 69 034340 C 1 0 1 T 45 44 89 034357 C 1 0 1 T 45 44 89 034607 C 0 1 1 G 46 45 91 035174 T 9 5 14 C 39 41 80 035260 T 1 0 1 C 47 46 93 035555 G 1 0 1 C 47 46 93 035594 C 1 0 1 A 47 46 93 035862 G 20 5 25 A 28 41 69 036423 G 1 0 1 T 47 46 93 036929 A 1 0 1 G 47 46 93 036941 G 2 0 2 A 46 46 92 037470 G 3 0 3 C 43 46 89 037908 A 9 5 14 G 35 41 76 037960 T 8 0 8 C 36 46 82 038235 C 1 0 1 T 37 42 79 042540 G 1 0 1 A 47 46 93 042606 A 4 0 4 C 44 46 90 042642 G 4 0 4 A 44 46 90 042669 C 9 0 9 T 39 46 85 043046 A 4 0 4 G 44 46 90 043347 C 1 0 1 T 45 46 91 043402 A 3 0 3 G 39 32 71 043431 + 24 13 37 - 24 33 57 043884 G 9 5 14 A 37 41 78 043922 G 13 5 18 A 33 41 74 044010 C 4 0 4 G 42 46 88 044080 C 1 0 1 T 45 46 91 044326 C 2 0 2 T 44 46 90 048102 A 1 0 1 G 45 44 89 048103 + 1 0 1 - 45 44 89 048364 A 0 1 1 G 48 45 93 048532 T 24 5 29 C 24 41 65 048550 - 1 0 1 + 47 44 91 048637 A 0 2 2 G 46 44 90 049207 T 15 0 15 G 31 46 77 049971 G 30 14 44 C 16 32 48 050097 A 20 14 34 G 26 32 58 060100 C 1 0 1 G 47 44 91 060125 - 3 4 7 + 43 40 83 060312 C 1 0 1 A 47 46 93 060410 A 12 0 12 G 36 46 82 060418 G 3 4 7 A 45 42 87 060494 T 1 0 1 C 43 46 89 060505 A 2 0 2 G 42 46 88 060537 T 3 4 7 C 43 42 85 060564 A 1 0 1 G 45 46 91 060646 T 1 1 2 G 45 45 90 060975 T 11 0 11 G 35 44 79 061015 T 1 0 1 C 45 44 89 061053 C 11 27 38 T 35 17 52 061276 T 1 8 9 G 47 38 85 061681 - 2 0 2 + 46 46 92 061801 A 15 5 20 C 33 41 74 061834 A 2 0 2 C 46 46 92 061843 G 3 4 7 T 45 42 87 061922 C 2 0 2 T 46 46 92 062109 A 15 5 20 G 33 41 74 062252 G 3 4 7 C 45 42 87 062265 A 3 3 6 G 45 43 88 062360 A 30 5 35 G 18 41 59 062427 + 1 0 1 - 47 46 93 062546 C 3 4 7 T 45 42 87 062738 C 3 0 3 A 45 46 91 062812 T 12 0 12 C 36 46 82 062836 T 11 0 11 C 37 46 83 063044 A 1 0 1 C 47 46 93 063119 - 3 4 7 + 45 42 87 063188 T 17 6 23 G 31 40 71 066443 T 34 10 44 C 14 36 50 066462 G 1 0 1 C 47 46 93 066507 G 33 10 43 A 15 36 51 066545 - 12 0 12 + 36 46 82 073623 C 1 0 1 G 47 44 91 074181 C 1 0 1 A 47 46 93 074216 - 1 0 1 + 47 44 91 074244 + 0 1 1 - 48 45 93 075462 A 1 0 1 G 47 44 91 075740 C 25 12 37 G 23 22 45 076279 - 1 0 1 + 43 46 89 076588 A 1 0 1 G 47 46 93 076679 A 1 0 1 C 47 46 93 076690 A 0 2 2 G 48 44 92 076879 G 4 9 13 T 40 25 65 077071 T 2 3 5 G 42 43 85 077283 G 14 0 14 A 28 44 72 077379 - 9 0 9 + 35 40 75 077659 T 13 0 13 A 33 46 79 104484 C 16 0 16 A 32 46 78 104576 - 1 0 1 + 47 46 93 104631 T 10 18 28 C 38 28 66 104747 A 1 1 2 G 47 43 90 104752 C 1 0 1 T 47 44 91 104867 G 28 6 34 C 20 40 60 104900 + 28 8 36 - 20 38 58 104978 A 2 0 2 G 46 46 92 104983 G 12 8 20 A 36 38 74 105046 T 12 8 20 C 36 38 74 105054 A 0 1 1 G 48 45 93 105073 A 0 1 1 G 48 45 93 105345 A 16 0 16 G 32 46 78 105503 C 16 0 16 T 32 46 78 105823 + 1 0 1 - 47 46 93 106190 G 28 8 36 A 20 38 58 106721 C 1 0 1 A 45 44 89 106969 C 28 8 36 T 20 38 58 107370 T 12 22 34 G 36 24 60 107602 C 12 8 20 T 36 38 74 107623 G 1 0 1 A 47 46 93 108102 T 1 0 1 C 47 46 93 108218 T 5 0 5 C 43 46 89 108245 T 11 0 11 C 37 46 83 112335 G 3 0 3 T 45 42 87 112528 G 1 0 1 C 47 42 89 112726 G 1 1 2 C 47 43 90 112859 T 1 1 2 C 47 43 90 112900 A 14 23 37 G 24 19 43 113058 C 15 22 37 A 33 24 57 113168 A 0 1 1 G 48 45 93 113457 C 2 0 2 G 46 46 92 113644 G 17 8 25 T 29 36 65 113747 C 1 0 1 T 45 44 89 113933 T 2 1 3 C 44 45 89 113945 C 0 3 3 A 46 43 89 114378 C 1 0 1 T 47 46 93 114391 G 1 0 1 A 47 46 93 114691 A 1 0 1 C 47 46 93 114949 G 1 3 4 A 47 43 90 114995 A 1 1 2 G 47 45 92 115400 G 20 7 27 A 28 39 67 115533 A 0 1 1 G 48 45 93 115539 T 3 12 15 C 45 34 79 116165 - 12 22 34 + 36 24 60 116249 G 4 0 4 A 44 46 90 116402 G 0 1 1 A 46 45 91 116459 G 4 0 4 C 44 46 90 116992 T 0 4 4 C 44 36 80 117185 - 3 14 17 + 41 26 67 117238 T 1 0 1 C 43 40 83 117418 G 2 0 2 A 42 40 82 117517 C 2 0 2 T 42 40 82 128078 C 1 1 2 T 47 45 92 128402 G 1 0 1 A 47 46 93 128439 G 1 0 1 A 47 46 93 128511 C 11 0 11 T 37 46 83 128772 C 1 0 1 T 45 40 85 128801 A 5 0 5 G 41 40 81 128977 A 1 0 1 G 45 44 89 129209 C 1 0 1 G 45 44 89 129371 A 1 0 1 G 45 44 89 129440 C 1 0 1 T 37 40 77 129464 G 1 0 1 A 37 40 77 134269 A 1 1 2 G 43 45 88 134283 A 17 4 21 G 27 42 69 134439 T 3 0 3 C 41 46 87 134667 T 8 0 8 G 30 46 76 135040 G 1 0 1 A 47 46 93 135374 G 1 0 1 C 47 46 93 144562 G 1 0 1 C 47 42 89 144589 T 4 2 6 G 44 40 84 144717 C 5 0 5 T 43 42 85 144748 C 1 0 1 T 47 42 89 144753 T 0 2 2 C 48 40 88 144755 G 1 0 1 C 47 44 91 145164 C 1 3 4 T 43 43 86 145316 T 1 0 1 C 43 46 89 145591 G 1 0 1 A 47 46 93 146198 C 1 0 1 T 47 46 93 146236 T 1 0 1 C 47 46 93 146395 G 19 3 22 C 29 43 72 146407 C 2 0 2 T 46 46 92 146460 A 19 3 22 G 29 43 72 146486 A 1 0 1 C 47 46 93 146492 T 19 3 22 C 29 43 72 146588 T 1 0 1 C 45 44 89 146619 A 1 0 1 G 45 44 89 146726 C 18 4 22 A 28 40 68 146733 - 0 2 2 + 44 40 84 146897 G 13 3 16 A 33 43 76 147062 T 1 2 3 C 43 44 87 147094 T 13 3 16 G 33 43 76 147151 A 4 3 7 G 42 43 85 147160 C 19 5 24 T 27 41 68 147198 T 0 5 5 C 46 41 87 147624 + 1 0 1 - 43 38 81 147770 G 1 0 1 A 41 42 83 147797 A 14 2 16 G 30 38 68 148117 A 1 0 1 C 47 46 93 148199 G 0 1 1 T 48 45 93 148343 G 3 16 19 C 41 30 71 148367 C 1 0 1 A 39 46 85 148465 + 4 0 4 - 44 46 90 148476 C 1 0 1 T 47 46 93 148598 C 4 3 7 A 44 43 87 148609 A 3 0 3 C 45 46 91 149110 A 2 0 2 G 42 46 88 149617 A 4 0 4 C 42 46 88 149951 A 18 3 21 C 30 43 73 149952 C 3 16 19 G 45 30 75 162909 G 19 14 33 A 23 32 55 162943 * 162974 C 19 14 33 T 23 32 55 162975 T 19 14 33 G 23 32 55 163064 A 0 1 1 G 42 45 87 163114 A 1 0 1 G 41 46 87 163375 C 4 14 18 T 38 32 70 163654 C 9 0 9 A 39 46 85 164094 C 7 0 7 T 41 46 87 164176 C 12 0 12 T 36 46 82 171676 C 8 4 12 A 38 40 78 171728 T 1 0 1 G 45 44 89 172005 T 1 0 1 G 43 44 87 172157 A 1 5 6 G 37 39 76 172161 A 0 1 1 G 38 43 81 172465 A 2 0 2 G 46 44 90 172533 G 9 0 9 A 39 44 83 172555 T 5 8 13 C 43 38 81 172668 C 8 4 12 T 40 40 80 172677 T 9 0 9 C 39 46 85 172730 A 1 0 1 C 47 46 93 173020 T 1 0 1 C 47 46 93 173238 C 8 0 8 T 38 42 80 173239 A 8 0 8 G 38 42 80 173246 G 1 0 1 A 45 42 87 173274 C 6 0 6 A 40 42 82 173294 C 8 0 8 T 38 42 80 173502 T 8 0 8 C 38 40 78 173609 - 8 0 8 + 38 42 80 173610 C 8 0 8 A 38 42 80 173687 - 1 0 1 + 45 42 87 173758 C 6 4 10 T 38 38 76 190232 G 7 7 14 A 35 37 72 190248 G 13 10 23 A 29 34 63 190276 C 5 7 12 G 33 37 70 190280 T 5 7 12 C 37 37 74 190309 C 7 0 7 G 35 44 79 190441 G 5 7 12 A 39 37 76 190592 G 2 0 2 A 42 44 86 190596 T 3 0 3 C 41 44 85 191115 A 23 10 33 G 11 34 45 191146 T 3 10 13 C 33 30 63 191340 T 1 0 1 C 37 42 79 201974 G 9 35 44 A 37 11 48 202061 T 1 0 1 A 41 46 87 202103 G 6 4 10 A 40 42 82 202789 C 1 0 1 T 47 46 93 202840 C 1 0 1 T 47 46 93 203218 A 4 0 4 C 44 46 90 203247 G 4 0 4 A 44 46 90 203475 G 1 0 1 A 47 46 93 203987 T 1 0 1 C 47 46 93 203996 G 1 0 1 C 47 46 93 204091 C 1 0 1 T 47 46 93 204502 - 1 0 1 + 45 46 91 204654 G 4 0 4 T 44 46 90 204828 T 19 0 19 C 29 46 75 205094 A 1 0 1 C 45 46 91 205452 T 1 0 1 C 47 46 93 205912 A 2 3 5 G 40 43 83 205914 A 33 11 44 G 9 35 44 206240 A 9 35 44 G 35 11 46 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000100: c 001792: C 001852: GGAG 002566: ATAG 034334: T 043431: CTTTTTATCATT 048103: TTAGCAA 048550: C 060125: aaagtatgac 061681: cacagttctggcagccagaa 062427: A 063119: AT 066545: AA 074216: at 074244: t 076279: A 077379: TAAAT 104576: act 104900: T 105823: A 116165: A 117185: t 146733: t 147624: ta 148465: G 173609: a 173687: aa 204502: A Tri-allelic sites: Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop Allele3 AD-pop ED-pop Total-pop 162943 A 5 0 5 C 14 14 28 T 23 32 55