Introduction to Software Tools for Sequence Analysis

July 15, 2002


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Table of Contents

Sequence-Based SNP Identification

Phred

Evaluating Quality

Phrap

Consed

More Consed

PolyPhred Introduction

PolyPhred 3.5 Rankings Key

Concept Behind PolyPhred

Basis of PolyPhred Rankings

PolyPhred Output Flowchart

PolyPhred Screen Shot

GC Compressions

Insertion/Deletion Polymorphism

3bp Insertion/Deletion Example

Linux Command Cheat Sheet

Gene Directory Examples

Introduction to Software Tools for SNP Discovery

Author: Mark Rieder

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