LOCUS AF382388 5559 bp DNA linear PRI 07-JUN-2001 DEFINITION Homo sapiens vitronectin (VTN) gene, complete cds. ACCESSION AF382388 VERSION AF382388.1 GI:14326448 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 5559) AUTHORS Rieder,M.J., Carrington,D.P., Chung,M.-W., Lee,K.L., Poel,C.L., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (19-MAY-2001) Molecular Biotechnology, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.mbt.washington.edu). FEATURES Location/Qualifiers source 1..5559 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 117 /frequency="0.01" /replace="A" repeat_region 174..299 /rpt_family="MIR" /rpt_type=dispersed variation 384 /frequency="0.14" /replace="T" repeat_region 488..543 /rpt_family="MIR" /rpt_type=dispersed repeat_region 825..942 /rpt_family="MIR" /rpt_type=dispersed variation 925 /frequency="0.03" /replace="C" variation 967 /frequency="0.16" /replace="C" variation 1037 /frequency="0.16" /replace="T" gene 1201..4182 /gene="VTN" mRNA join(1201..1327,1421..1540,1616..1960,2039..2178, 2439..2595,2794..2946,3408..3752,3986..4182) /gene="VTN" /product="vitronectin" CDS join(1264..1327,1421..1540,1616..1960,2039..2178, 2439..2595,2794..2946,3408..3752,3986..4098) /gene="VTN" /note="serum spreading factor, somatomedin B, complement S-protein" /codon_start=1 /product="vitronectin" /protein_id="AAK60270.1" /db_xref="GI:14326449" /translation="MAPLRPLLILALLAWVALADQESCKGRCTEGFNVDKKCQCDELC SYYQSCCTDYTAECKPQVTRGDVFTMPEDEYTVYDDGEEKNNATVHEQVGGPSLTSDL QAQSKGNPEQTPVLKPEEEAPAPEVGASKPEGIDSRPETLHPGRPQPPAEEELCSGKP FDAFTDLKNGSLFAFRGQYCYELDEKAVRPGYPKLIRDVWGIEGPIDAAFTRINCQGK TYLFKGSQYWRFEDGVLDPDYPRNISDGFDGIPDNVDAALALPAHSYSGRERVYFFKG KQYWEYQFQHQPSQEECEGSSLSAVFEHFAMMQRDSWEDIFELLFWGRTSAGTRQPQF ISRDWHGVPGQVDAAMAGRIYISGMAPRPSLAKKQRFRHRNRKGYRSQRGHSRGRNQN SRRPSRATWLSLFSSEESNLGANNYDDYRMDWLVPATCEPIQSVFFFSGDKYYRVNLR TRRVDTVDPPYPRSIAQYWLGCPAPGHL" variation 1795 /gene="VTN" /frequency="0.01" /replace="T" variation 2006 /gene="VTN" /frequency="0.15" /replace="A" variation 2011 /gene="VTN" /frequency="0.16" /replace="C" variation 2412 /gene="VTN" /frequency="0.01" /replace="T" variation 2572 /gene="VTN" /frequency="0.02" /replace="A" variation 2608 /gene="VTN" /frequency="0.01" /replace="C" variation 2656 /gene="VTN" /frequency="0.30" /replace="T" variation 2784 /gene="VTN" /frequency="0.03" /replace="T" repeat_region 3260..3325 /rpt_family="MIR" /rpt_type=dispersed variation 3627 /gene="VTN" /frequency="0.46" /replace="T" variation 3827 /gene="VTN" /frequency="0.13" /replace="T" variation 3960 /gene="VTN" /frequency="0.02" /replace="A" variation 4005 /gene="VTN" /frequency="0.13" /replace="C" variation 4192 /frequency="0.14" /replace="C" variation 4361..4362 /frequency="0.97" /replace="-" variation 4454 /frequency="0.02" /replace="T" variation 4534 /frequency="0.02" /replace="C" variation 4772 /frequency="0.02" /replace="T" repeat_region 4797..4900 /rpt_family="FRAM" /rpt_type=dispersed variation 4873 /frequency="0.03" /replace="G" repeat_region 4917..5192 /rpt_family="AluJo" /rpt_type=dispersed variation 5092 /frequency="0.02" /replace="C" repeat_region 5206..5515 /rpt_family="AluSg" /rpt_type=dispersed variation 5232 /frequency="0.35" /replace="G" variation 5259 /frequency="0.35" /replace="C" variation 5260 /frequency="0.02" /replace="G" variation 5278 /frequency="0.05" /replace="A" variation 5286 /frequency="0.02" /replace="A" variation 5344 /frequency="0.02" /replace="A" ORIGIN 1 ctcagtcagt cgcagccacc tccccctgcg ctggacttgg aggaaggggg tggagaatga 61 gaggacgctc tccgttctcc gccccgcctc cccgccccac gtgacatcgg tacgtgggag 121 caacaccgct ggatgccccc tccctactaa atggttaaaa caatcatcat aactcttaag 181 gcccttttat ggctgtttct tagcgaaacc tcacaacatg cctatggggt gggaattgat 241 gttccattcc acagctgact ccactgaagc ccatgaggaa gaaattggcc caaatcacag 301 tcccctctga ttacagaaca gaaaaagtca gctaaaatct caggatcact tttttcaggt 361 gatgggagga tttcagaagt tctgtggaca cctgaaattg ggcacaaaat caggtgtttc 421 atgccagtgg gcattttcca ggtagaggga tcatatttct ctcgagagtc taaaagtgtg 481 ttgaacaagc ccactcttta cagatgggga gactgagcct ggggacaggg agtggcctgc 541 tcagaaaaga ctcagaaatt aaatccagtc cagtgggttg atatttaccc aaatttccag 601 cctggggaga ttgatgcacc caagagaaga acccagaaat gaaactttgt tcttttatgc 661 taaaaaataa aattccccag agtgcttaca atctctcctc ccactccctt tttcctgccc 721 taaataaata atggcgaatg agcacccagc cagggatgtg tctgatcaaa caatcatgga 781 tcaatagcta tgtttggaga aggaatttgt ggctgctcca gctactgggc attttgtctg 841 gtccagttca tgtaatctcc caacacccca tgaagcaagg ctttgttaat cctattttac 901 tgaaaatgaa ctaagactca gagagataaa gctgttgccc aatgagcctt ctttctgccc 961 tccagatcca cggtgctaat tccccttccg atgacctaat gattctgagc ttggcaaagg 1021 tcttatctcc cagctcgccc aggcccagtg ttccaggaat gtgacctttg ctgcagcagc 1081 cgctggaggg ggcagagggg atgggctgga ggttgagcaa acagagcagc agaaaaggca 1141 gttcctcttc tccagtgccc tccttccctg tctctgcctc tccctccctt cctcaggcat 1201 cagagcggag acttcaggga gaccagagcc cagcttgcca ggcactgagc tagaagccct 1261 gccatggcac ccctgagacc ccttctcata ctggccctgc tggcatgggt tgctctggct 1321 gaccaaggta caggggagtg ttggtggcca tctgggtcaa tgtagggagg gcgagggtgg 1381 tctgggcttg gtggcaccga ctgacactcc ttcctcatag agtcatgcaa gggccgctgc 1441 actgagggct tcaacgtgga caagaagtgc cagtgtgacg agctctgctc ttactaccag 1501 agctgctgca cagactatac ggctgagtgc aagccccaag gtgtgttcag agcccaggtg 1561 ggtgggctgg ggtgccccct gctgctggag actcactacc atccactctc tgcagtgact 1621 cgcggggatg tgttcactat gccggaggat gagtacacgg tctatgacga tggcgaggag 1681 aaaaacaatg ccactgtcca tgaacaggtg gggggcccct ccctgacctc tgacctccag 1741 gcccagtcca aagggaatcc tgagcagaca cctgttctga aacctgagga agaggcccct 1801 gcgcctgagg tgggcgcctc taagcctgag gggatagact caaggcctga gacccttcat 1861 ccagggagac ctcagccccc agcagaggag gagctgtgca gtgggaagcc cttcgacgcc 1921 ttcaccgacc tcaagaacgg ttccctcttt gccttccgag gtgaatccag ggcaggtact 1981 ggggatgcgg gtctgcccca ggagcgtccc tgctctcaca ccatctcctc cactctaggg 2041 cagtactgct atgaactgga cgaaaaggca gtgaggcctg ggtaccccaa gctcatccga 2101 gatgtctggg gcatcgaggg ccccatcgat gccgccttca cccgcatcaa ctgtcagggg 2161 aagacctacc tcttcaaggt gccaggggct gtgggccagg gtagaaagca tctagggagg 2221 gtttgagagc tattgctccc agggacaggg tggacaggga agctggaccc agggccctgc 2281 aggacctggt gggagctctg tgagcacagg gcagccccaa gactccaggt cctgggcagt 2341 gaacctggac ctgggaacgg ctgccttagg gcaagggact ctgcctctgt gcccagccag 2401 cggcctccat accccttttc actttcccca cctcttaggg tagtcagtac tggcgctttg 2461 aggatggtgt cctggaccct gattaccccc gaaatatctc tgacggcttc gatggcatcc 2521 cggacaacgt ggatgcagcc ttggccctcc ctgcccatag ctacagtggc cgggagcggg 2581 tctacttctt caagggtact cagggggtgg tgggagactg agcaggcagt ggagcagtct 2641 tggattcctt tcacacttca ctggggacag gcctcagcat gtgcccaccc ctgaccccca 2701 cctcatgctg ggagatccta acttcaacag cctctgggat ctccagtctt gccctggccc 2761 agccctccta atgcccacca ccccgctcct cagggaaaca gtactgggag taccagttcc 2821 agcaccagcc cagtcaggag gagtgtgaag gcagctccct gtcggctgtg tttgaacact 2881 ttgccatgat gcagcgggac agctgggagg acatcttcga gcttctcttc tggggcagaa 2941 cctctggtat ggagagaggg caagtcttgc ttctccctca aaagggctga aaccccttgg 3001 tattggtaga gccaggccgg ctggaggggg ctgtggttgt ggagctatcg atcaaagtct 3061 gtttgctcag gccagacttt gcttctgttg accttttggg gaaagctcag ctctacctgg 3121 accccacacc ttggactttg cctagcacag ctgagagcac agccagcaga gggaggggct 3181 gtggctgagg agtttagggg gcctgggggg gtggggtcga gacaccagtg atatggtgga 3241 gggaaagcac agggggaagg gaattggact gagagtcaaa ggcctggctc tgccattcgc 3301 tgctgtgtgt ctttgggcaa ggtgcagcag atgaactcta atggccccgc tggaaggggc 3361 aagattcgga cccccaagac ctctcattca ccccttccct gccacagctg gtaccagaca 3421 gccccagttc attagccggg actggcacgg tgtgccaggg caagtggacg cagccatggc 3481 tggccgcatc tacatctcag gcatggcacc ccgcccctcc ttggccaaga aacaaaggtt 3541 taggcatcgc aaccgcaaag gctaccgttc acaacgaggc cacagccgtg gccgcaacca 3601 gaactcccgc cggccatccc gcgccacgtg gctgtccttg ttctccagtg aggagagcaa 3661 cttgggagcc aacaactatg atgactacag gatggactgg cttgtgcctg ccacctgtga 3721 acccatccag agtgtcttct tcttctctgg aggtaggagc cgctgccacc cctgaagctg 3781 gtctagcttg ggttttcctt gctgtccctg gtgcacaagg gctgaacgca gcctgcaagt 3841 agtgaccaca gaaagccagg ccagaagtcc ttagctgcat catggatgtt cactttccct 3901 tctgggagag accctagact tctcaaggga agagtgggca gggccaggct gggcctcacg 3961 catcctctgc tttcctctct tccagacaag tactaccgag tcaatcttcg cacacggcga 4021 gtggacactg tggaccctcc ctacccacgc tccatcgctc agtactggct gggctgccca 4081 gctcctggcc atctgtagga gtcagagccc acatggccgg gccctctgta gctccctcct 4141 cccatctcct tcccccagcc caataaaggt cccttagccc cgagtttaaa attattgttc 4201 tgactggggt agacacatcc ctgtctgggt aaaggagagg aagctggact gtcagaatgg 4261 gttggtgagg gggacagaga agggacagag aagggcctcg ccgtgtccaa cccatgttgg 4321 gctcaggacc tctctgtgct caggacctct ctgtgaaccg aagtttgggg ctggggaagg 4381 cctcctgaga gctacccttc ctcttgagct aagcagcccc cagcaaccca ccagcagcta 4441 agcagacact tgaactcctc tgatgatgac aaagttacca ggccagcctc cgtgggtgag 4501 gcttgctttg ccccttggag ttgactaggg tcttggagga gagagaaggg gcaagagttg 4561 gtggggttct ggctcagctt ttttgtccat cctgatctga aatcctagta gctctgactc 4621 ctgagcactt ggggaaccag tcactgtgct tccccaaacc cacccctagg gtgagccttt 4681 cttgaggtct ctgtctaggg tctaggatgg ggagcagcaa gaccaggaga gatagtgaag 4741 ggcagaaact gaaaggaaat tcaaaagcac acacttcttg tggaaaagtg gcccaggagc 4801 ccaggagttt gaagctgcag tgagctatta ttgtaccact gcactccaac ctggggaata 4861 gagtgagact ctatctctaa aaacagaaca aaataaaaaa gggggggaat ttttgtctgg 4921 gcatggtggc tcatgcctgt aattccagca ctttgggaag ccaaggtggg aggattgctg 4981 gaatcccgaa gtttgagacc agcctaggca atatagcaag acaccatctc tacaaaaata 5041 aataagttag ctgggcaact tatgggtggt gtgtgcctgt agtcccagct atttaggagg 5101 ctgaggtggg aggattgctt gagcttggga ggttgaggct gcagtgagca gaaatcacac 5161 cactgtactc cagcctgggc aacagagtga gaaaaagaaa atttaggcca ggcacggtgg 5221 ttcatgcctg tagtcccagc actttgggaa accaaggcgc gtggatcatg aggttaggag 5281 ttcgagacca gcctggccaa catggtgaaa ccccgtctct actaaaaata caaaaaatta 5341 gccgggtgtg gtggcaggcg cctgtaaccc cagctactcc ggaggaagag gcaggaggtg 5401 gagttgcttg aactcgggag gtggaggttg cagtgagcca agatcacgcc actgcactcc 5461 agcctgggtg acaaagcaag actccatctt gaaaaaaaaa gaaaaaagaa aaaaattttc 5521 aaaatttaag aaaaagtggc tcagaatata tccaaggaa //