************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 vcam1.phase.inp vcam1.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST vcam1.phase.out_freqs : haplotype frequency estimates vcam1.phase.out_pairs : most likely haplotype pairs for each individual vcam1.phase.out_recom : estimates of recombination parameters vcam1.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 56 Positions of loci: 376 452 798 805 1564 2288 2343 2823 4199 4301 4952 5172 6390 6925 7153 7752 7846 9152 9342 9925 9983 10032 10313 10651 11199 12439 12664 12907 13292 13438 13642 13792 14294 15633 15713 15894 16152 16891 16984 17613 18044 18152 19227 19261 19359 20118 20400 20703 20770 20832 21172 21649 21733 22121 22548 22668 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file vcam1.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CITTTCGCACCGCTCAATGCATAICGTGGATGGTCAAAGGTTACGAACAAAACCGT 1.000000 2 CITTTCGCACCGTTCAATGCATAICTGGGATGGTCAGAGGTTACAAATAAAACAGT 1.000000 3 CITTTCGCACCGTTCAATGCATAICGGGGATGGTCAAAAATTATAAACAGAATCGT 1.000000 4 CITTTCGCACCGTTCAATGCATAICGTGGATGGTCAAAGATTGCGATCAAAGCCGT 2.000000 5 CITTTCGCACCGTTCAATGCATAICGTGGATGGTCAAGGGTAACAAACAAAACCGT 2.000000 6 CITTTCGCGCCGCTCAATGCATAICGTGGATGATCAGAGGTTACAAATAAAACAGT 1.000000 7 CITTTCGCGCGGCTCAATGCATAICGGGGATGGTCAAAGATTATAAACAGAATCGT 2.000000 8 CITTTCGCGCGGCTCAATGCATAICGGGGATGGTCAAAGATTGCGATCAAAGCCGT 1.000000 9 CITTTCGCGCGGCTCAATGCATAICGTGGATGGTCGAAGGTTACGAACAGAACCGG 1.000000 10 CITTTCGCGCGGCTCAATGCATAICGTGGATGGCCAAAGGCTACAAACAGAACCGT 1.000000 11 CITTTCGCGTCGCTCACTGCATAICGGGGATGGTCAAAGATTGCGATCAAAGCCGT 1.000000 12 CITTTCGCGTCGCTCACTGCATAICGGGGATGGTTAAAGATTGCGATCAAAGCCGT 1.000000 13 CITTTCGCGTCGCTCACTGCATAICGTGGATGGTCAAAGATTGCGATCAAAGCCGT 4.000000 14 CITTTCGCGTCGCTCACTGCATAICGTGGTTGGTCAAAGATTGCGATCAAAGCCGT 1.000000 15 CITTCCGCGCGGCTCAATGCATAICGGGGACGGTCAAAGATTGCGATCAAAGCCGT 1.000000 16 CITTCCGCGCGGCTCAATGCATAICGGGGATGGTCAAAGATTGCGATCAAAGCCGT 2.000000 17 CITTCCGCGCGGCTCAATGCATAICGGGGATGGTCAAAGGTTACGAACAGAACCGT 1.000000 18 CITTCCGCGCGGCTCAATGCATAICGGGGATGGTCAAAGGTTACATACAAAACCGT 1.000000 19 CITTCCGCGCGGCTCAATGCATAICGGGGATGGTCAAAAATTATAAACAGAATCGT 1.000000 20 CITTCCGCGCGGCTCAATGCATAICGGGGATGGTCAAAAGTTACGAACTAAACCGT 1.000000 21 CITTCCGCGCGGCTCAATGCATAICGGGGATGATCAAAGATTGCGATCAAGGCCGT 1.000000 22 CITCTCGCGCCGCTCAATGCATAICGGCGATCGTCAAAGGTTACGAACAGAACCGT 1.000000 23 CITCTCGCGCCGCTCGACTAACGDCGGGGATGATCAGAGGTTACAAATAAAACAGT 1.000000 24 CITCTCGCGCCGCCCAATGCATAICGGCGACGGTCAAAAATTACAAACAGAATCGT 1.000000 25 CITCTCGCGCCGCCCAATGCATAICGGCGACGATCGAAGGTTACGAACAGAACCGG 1.000000 26 CITCTCGCGCCACTTAATGCGTAICGGGGACGGTCAAAGGTTACAAACAAAACCGT 1.000000 27 CITCTCGCGCCACTTAATGCGTAICGGGGACGGTCAAAGGTTACATACAAAACCGT 1.000000 28 CITCTCGCGCCACTTAATGCGTAICGGGGATGGTCAGAGGTTACAAATAAAACCGT 1.000000 29 CITCTCGCGCCACTTAATGCGTAITGGGGATGGTCAAAGATTGCGATCAAAGCCGT 6.000000 30 CITCTCGCGCCACTTAATGCGTAITGGGGATGGTCAAGGGTAACAAACAAAACCGT 3.000000 31 CITCTCGCGCCACTTAATGCGTAITGGGGATGGTCAGAGGTTACAAATAAAACAGT 2.000000 32 CITCTTATGCCGCTCGACTAACGDCGGGAACGGCCAAAGGCTACAAACAGAACCGT 1.000000 33 CITCTTATGCCGCTCGACTAACGDCGGGAATGGTCAAAGATTGCGATCAAGGCCGT 2.000000 34 CDTTTCGCACCGCTCAATGCATAICGTGGACGGCCAAAGGCTACAAACAGAACCGT 1.000000 35 CDTTTCGCACCGCTCGACTAACGDCGGGGATCGTCAAGGGTAACAAACAAAACCGT 1.000000 36 CDTTTTATGCCGCTCGACTAACGICGGGGACGGTCAAAGATTACGAACAAAACCTT 1.000000 37 TIGTTCGCACCGCTCAATGCATAICTGGGACGATCAGAGGTTACAAATAAAACAGT 1.000000 38 TIGTTCGCACCGCTCAATGCATAICTGGGATGGTCAAAGATTACGAACTGAACCTT 1.000000 39 TITTTCGCACCGCTCAATGCATAICTGGGACGGTCAAAGATTACGAACTGAACCTT 1.000000 40 TITTTCGCACCGCTCAATGCATAICTGGGACGGTCAAAGGTTACATACAAAACCGT 1.000000 41 TITTTCGCACCGCTCAATGCATAICTGGGACGATCAAAGATTGCGATCAAAGCCGT 2.000000 42 TITTTCGCACCGCTCAATGCATAICGGGGACGATCAGAGGTTACAAATAAAACAGT 1.000000 43 TITTTCGCACCGCTCAATGCATAICGGGGATGGTCAAAGATTGCGATCAAAGCCGT 1.000000 44 TITTTCGCACCGCTCAATGCATAICGGGGATGATCGAAGGTTACGAACAGAACCGG 1.000000 45 TITTTCGCACCGCTCAATGCATAICGGGAATGGTCAAAGATTACGAACAAAACCTT 1.000000 46 TITTTCGCACCGCTCAATGCATAICGGGAATGGTCAAAGATTGCGATCAAAGCCGT 1.000000 47 TITTTCGCACCGCTCAATGCATAICGGCGATCGTCGAAGGTTACGAACAGAACCGG 1.000000 48 TITTTCGCACCGCTCAATGCATAICGTGGATGGTCAAAGATTGCGATCAAAGCCGT 4.000000 49 TITTTCGCACCGCTCAATGCATAICGTGGATGGTCAAAGGTTACGAACAAAACCGT 3.000000 50 TITTTCGCACCGCTCAATGCATAICGTGGATGGTCAAAAATTACAAACAGAATCGT 2.000000 51 TITTTCGCACCGCTCAATGCATAICGTGGATGGTCAGAGGTTACAAATAAAACCGT 1.000000 52 TITTTCGCACCGCTCAATGCATAICGTGGATGGTCAGAGGTTACAAATAAAACAGT 1.000000 53 TITTTCGCACCGCTCAATGCATAICGTGGATGGTTAAAGATTGCGATCAAAGCCGT 5.000000 54 TITTTCGCACCGCTCAATGCATAICGTGGTTGGTCAAAGATTGCGATCAAAGCCGT 6.000000 55 TITTTCGCACCGCTCAATGCATAICGTGGTTGGTCAGAGGTTACAAATAAAACAGT 1.000000 56 TITTTCGCACCGCTCAATGCATAICGTGGTTGGTTAAAGATTGCGATCAAAGCCGT 2.000000 57 TITTTCGCACCGCTCAATGCATAITGGGGATGGTCAAGGGTAACAAACAAAACCGT 1.000000 58 TITTTCGCACCGCTCAATGCATAITGGGGATGGTCAGAGGTTACAAATAAAACAGT 2.000000 59 TITTTCGCACCGCTCAATGCATAITGTGGATGGTCAAAGATTGCGATCAAAGCCGT 1.000000 60 TDGTTTATGCCGCTCGACTAACGDCGGCGATGGTCAGAGGTTACAAATAAAACAGT 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (38,39) D002: (29,45) D003: (17,60) D004: (46,47) D005: (1,34) D006: (8,23) D007: (6,54) D008: (3,25) D009: (35,37) D010: (10,16) D011: (26,53) D012: (32,36) D013: (7,33) D014: (9,49) D015: (20,41) D016: (22,27) D033: (2,40) D034: (7,15) D035: (21,49) D036: (33,41) D037: (18,44) D038: (43,58) D039: (24,42) D040: (19,29) E001: (13,49) E002: (29,48) E003: (4,31) E004: (30,30) E005: (4,56) E006: (29,53) E007: (54,58) E008: (13,50) E009: (11,54) E010: (54,56) E011: (13,57) E012: (5,48) E013: (53,54) E014: (14,28) E015: (13,55) E016: (50,54) E017: (30,48) E018: (31,52) E019: (5,53) E020: (29,59) E021: (16,29) E022: (48,51) E023: (12,53) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 [T] I (G) T T C G C A C C G C T C A A T G C A T A I C T G G G A T G G T C A A A G A T T A C G A A C T G A A C C T T [T] I (T) T T C G C A C C G C T C A A T G C A T A I C T G G G A C G G T C A A A G A T T A C G A A C T G A A C C T T 0 D002 C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T C A A A G A T T (G) C G A [T] C A A A (G) C C (G) T T I T T T C G C A C C G C T C A A T G C A T A I C G G G A A T G G T C A A A G A T T (A) C G A [A] C A A A (A) C C (T) T 0 D003 (C) (I) (T) T C C G C G C G G C T C A A T G C A T A I C G G (G) G A T G G T C A (A) A G G T T A C (G) A A (C) A (G) A A C (C) G T (T) (D) (G) T T T A T G C C G C T C G A C T A A C G D C G G (C) G A T G G T C A (G) A G G T T A C (A) A A (T) A (A) A A C (A) G T 0 D004 T I T T T C G C A C C G C T C A A T G C A T A I C G G (G) (A) A T (G) G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G G (C) (G) A T (C) G T C G A A G G T T A C G A A C A G A A C C G G 0 D005 C (I) T T T C G C A C C G C T C A A T G C A T A I C G T G G A (T) G G T C A A A G G T T A C [G] [A] A C A A A A C C G T C (D) T T T C G C A C C G C T C A A T G C A T A I C G T G G A (C) G G C C A A A G G C T A C A A A C A G A A C C G T 0 D006 C I T (T) T C G C G C (G) G C T C (A) A (T) (G) (C) A (T) (A) (I) C G G G G A T G (G) T C A (A) A G (A) T T (G) C (G) A (T) (C) A A A (G) C (C) G T C I T (C) T C G C G C (C) G C T C (G) A (C) (T) (A) A (C) (G) (D) C G G G G A T G (A) T C A (G) A G (G) T T (A) C (A) A (A) (T) A A A (A) C (A) G T 0 D007 (C) I T T T C G C (G) C C G C T C A A T G C A T A I C G T G G (A) T G (A) T C A G A G G T T A C A A A T A A A A C A G T (T) I T T T C G C (A) C C G C T C A A T G C A T A I C G T G G (T) T G (G) T C A A A G A T T G C G A T C A A A G C C G T 0 D008 C I T (T) T C G C (A) C C G (T) (T) C A A T G C A T A I C G G (G) G A (T) G (G) T C A A A A A T T A T A A A C A G A A T C G T C I T (C) T C G C (G) C C G (C) (C) C A A T G C A T A I C G G (C) G A (C) G (A) T C G A A G G T T A C G A A C A G A A C C G G 0 D009 (C) (D) (T) T T C G C A C C G C T C G A C T A A C G D C G G G G A T (C) G T C A (A) (G) G G T (A) A C A A A (C) A A A A C (C) G T (T) (I) (G) T T C G C A C C G C T C A A T G C A T A I C T G G G A C (G) A T C A (G) (A) G G T (T) A C A A A (T) A A A A C (A) G T 0 D010 C I T T (T) C G C G C G G C T C A A T G C A T A I C G (T) G G A T G G C C A A A G G C T A C A A A C A G A A C C G T C I T T (C) C G C G C G G C T C A A T G C A T A I C G (G) G G A T G G T C A A A G A T T G C G A T C A A A G C C G T 0 D011 C I T C T C G C G C C A C T T A A T G C G T A I C G G G G A C G G T (C) A A A G (G) T T (A) C (A) A (A) C A A A (A) C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G A T G G T (T) A A A G (A) T T (G) C (G) A (T) C A A A (G) C C G T 0 D012 C (I) T (C) T T A T G C C G C T C G A C T A A C G (D) C G G G (A) A C G G C C A A A G G C T A C A A A C A G A A C C G T C (D) T (T) T T A T G C C G C T C G A C T A A C G (I) C G G G (G) A C G G T C A A A G A T T A C G A A C A A A A C C T T 0 D013 C I T T T C G C G C G G C T C A A T G C A T A I C G G G G A T G G T C A A A G A T T A T A A A C A G A A T C G T C I T C T T A T G C C G C T C G A C T A A C G D C G G G A A T G G T C A A A G A T T G C G A T C A A G G C C G T 0 D014 (C) I T T T C G C (G) C (G) G C T C A A T G C A T A I C G T G G A T G G T C G A A G G T T A C G A A C A G A A C C G G (T) I T T T C G C (A) C (C) G C T C A A T G C A T A I C G T G G A T G G T C A A A G G T T A C G A A C A A A A C C G T 0 D015 C I T T C C G C G C G G C T C A A T G C A T A I C G G G G A T G (G) T C A A A (A) (G) T T (A) C G A (A) C (T) A A (A) C C G T T I T T T C G C A C C G C T C A A T G C A T A I C T G G G A C G (A) T C A A A (G) (A) T T (G) C G A (T) C (A) A A (G) C C G T 0 D016 C I T C T C G C G C C G C T C A A T G C A T A I C G G C G A T C G T C A A A G G T T A C (G) (A) A C A (G) A A C C G T C I T C T C G C G C C A C T T A A T G C G T A I C G G G G A C G G T C A A A G G T T A C (A) (T) A C A (A) A A C C G T 0 D033 (C) I T T T C G C A C C G (T) T C A A T G C A T A I C T G G G A (T) G G T C A G A G G T T A C A A A T A A A A C A G T (T) I T T T C G C A C C G (C) T C A A T G C A T A I C T G G G A (C) G G T C A A A G G T T A C A T A C A A A A C C G T 0 D034 C I T T (T) C G C G C G G C T C A A T G C A T A I C G G G G A (T) G G T C A A A G A T T A T A A A C A G A A T C G T C I T T (C) C G C G C G G C T C A A T G C A T A I C G G G G A (C) G G T C A A A G A T T G C G A T C A A A G C C G T 0 D035 (C) I T T (C) C G C (G) C (G) G C T C A A T G C A T A I C G (G) G G A T G (A) T C A A A G (A) T T (G) C G A (T) C A A (G) (G) C C G T (T) I T T (T) C G C (A) C (C) G C T C A A T G C A T A I C G (T) G G A T G (G) T C A A A G (G) T T (A) C G A (A) C A A (A) (A) C C G T 0 D036 C I T C T T A T G C C G C T C G A C T A A C G D C G G G A A T G G T C A A A G A T T G C G A T C A A G G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C T G G G A C G A T C A A A G A T T G C G A T C A A A G C C G T 0 D037 (C) I T T (C) C G C (G) C (G) G C T C A A T G C A T A I C G G G G A T G (G) T C A A A G G T T A C A T A C A A A A C C G T (T) I T T (T) C G C (A) C (C) G C T C A A T G C A T A I C G G G G A T G (A) T C G A A G G T T A C G A A C A G A A C C G G 0 D038 T I T T T C G C A C C G C T C A A T G C A T A I (C) G G G G A T G G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I (T) G G G G A T G G T C A G A G G T T A C A A A T A A A A C A G T 0 D039 (C) I T (C) T C G C (G) C C G C (C) C A A T G C A T A I C G G (C) G A C G (G) T C A A A A A T T A C A A A C A G A A T C G T (T) I T (T) T C G C (A) C C G C (T) C A A T G C A T A I C G G (G) G A C G (A) T C A G A G G T T A C A A A T A A A A C A G T 0 D040 C I T (T) (C) C G C G C (G) (G) C T (C) A A T G C (A) T A I [C] G G G G A T G G T C A A A A A T T A T A A A C A G A A T C G T C I T (C) (T) C G C G C (C) (A) C T (T) A A T G C (G) T A I [T] G G G G A T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E001 (C) I T T T C G C (G) (T) C G C T C A (C) T G C A T A I C G T G G A T G G T C A A A G A T T G C G A T C A A A G C C G T (T) I T T T C G C (A) (C) C G C T C A (A) T G C A T A I C G T G G A T G G T C A A A G G T T A C G A A C A A A A C C G T 0 E002 C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G A T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E003 C I T (T) T C G C (A) C C (G) (T) T (C) A A T G C (A) T A I (C) G (T) G G A T G G T C A A A G A T T G C G A T C A A A G C C G T C I T (C) T C G C (G) C C (A) (C) T (T) A A T G C (G) T A I (T) G (G) G G A T G G T C A G A G G T T A C A A A T A A A A C A G T 0 E004 C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T C A A G G G T A A C A A A C A A A A C C G T C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T C A A G G G T A A C A A A C A A A A C C G T 0 E005 C I T T T C G C A C C G T T C A A T G C A T A I C G T G G A T G G T (C) A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G T T G G T (T) A A A G A T T G C G A T C A A A G C C G T 0 E006 C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T (C) A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G A T G G T (T) A A A G A T T G C G A T C A A A G C C G T 0 E007 T I T T T C G C A C C G C T C A A T G C A T A I (C) G (T) G G (T) T G G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I (T) G (G) G G (A) T G G T C A G A G G T T A C A A A T A A A A C A G T 0 E008 (C) I T T T C G C (G) (T) C G C T C A (C) T G C A T A I C G T G G A T G G T C A A A G A T T G C G A T C A A A G C C G T (T) I T T T C G C (A) (C) C G C T C A (A) T G C A T A I C G T G G A T G G T C A A A A A T T A C A A A C A G A A T C G T 0 E009 C I T T T C G C G T C G C T C A C T G C A T A I C G (G) G G (A) T G G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G (T) G G (T) T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E010 T I T T T C G C A C C G C T C A A T G C A T A I C G T G G T T G G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G T T G G T T A A A G A T T G C G A T C A A A G C C G T 0 E011 (C) I T T T C G C (G) (T) C G C T C A (C) T G C A T A I (C) G (T) G G A T G G T C A A A G A T T G C G A T C A A A G C C G T (T) I T T T C G C (A) (C) C G C T C A (A) T G C A T A I (T) G (G) G G A T G G T C A A G G G T A A C A A A C A A A A C C G T 0 E012 (C) I T T T C G C A C C G (T) T C A A T G C A T A I C G T G G A T G G T C A A G G G T A A C A A A C A A A A C C G T (T) I T T T C G C A C C G (C) T C A A T G C A T A I C G T G G A T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E013 T I T T T C G C A C C G C T C A A T G C A T A I C G T G G (A) T G G T T A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G (T) T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E014 C I T (T) T C G C G (T) C (G) C T (C) A (C) T G C (A) T A I C G (T) G G (T) T G G T C A (A) A G (A) T T (G) C (G) A (T) (C) A A A (G) C C G T C I T (C) T C G C G (C) C (A) C T (T) A (A) T G C (G) T A I C G (G) G G (A) T G G T C A (G) A G (G) T T (A) C (A) A (A) (T) A A A (A) C C G T 0 E015 (C) I T T T C G C (G) (T) C G C T C A (C) T G C A T A I C G T G G (A) T G G T C A A A G A T T G C G A T C A A A G C C G T (T) I T T T C G C (A) (C) C G C T C A (A) T G C A T A I C G T G G (T) T G G T C A G A G G T T A C A A A T A A A A C [A] G T 0 E016 T I T T T C G C A C C G C T C A A T G C A T A I C G T G G (A) T G G T C A A A A A T T A C A A A C A G A A T C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G (T) T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E017 C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T C A A (G) G (G) T (A) (A) C (A) A (A) C A A A (A) C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G A T G G T C A A (A) G (A) T (T) (G) C (G) A (T) C A A A (G) C C G T 0 E018 C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T C A G A G G T T A C A A A T A A A A C A G T T I T T T C G C A C C G C T C A A T G C A T A I C G [T] G G A T G G T C A G A G G T T A C A A A T A A A A C A G T 0 E019 (C) I T T T C G C A C C G (T) T C A A T G C A T A I C G T G G A T G G T C A A G G G T A A C A A A C A A A A C C G T (T) I T T T C G C A C C G (C) T C A A T G C A T A I C G T G G A T G G T T A A A G A T T G C G A T C A A A G C C G T 0 E020 C I T C T C G C G C C A C T T A A T G C G T A I T G (G) G G A T G G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I T G (T) G G A T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E021 C I T T C C G C G C G G C T C A A T G C A T A I C G G G G A T G G T C A A A G A T T G C G A T C A A A G C C G T C I T C T C G C G C C A C T T A A T G C G T A I T G G G G A T G G T C A A A G A T T G C G A T C A A A G C C G T 0 E022 T I T T T C G C A C C G C T C A A T G C A T A I C G T G G A T G G T C A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G T G G A T G G T C A G A G G T T A C A A A T A A A A C C G T 0 E023 C I T T T C G C G T C G C T C A C T G C A T A I C G (G) G G A T G G T T A A A G A T T G C G A T C A A A G C C G T T I T T T C G C A C C G C T C A A T G C A T A I C G (T) G G A T G G T T A A A G A T T G C G A T C A A A G C C G T END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 ? ? (G) = = = = = ? ? = = = = = = = = = = = = = = = = = = = = T = = = = = = ? = = = = ? ? = = = = = = = = = = = = ? ? (T) = = = = = ? ? = = = = = = = = = = = = = = = = = = = = C = = = = = = ? = = = = ? ? = = = = = = = = = = = = 0 D002 C = = C = = = = G = = A = = T = = = = = G = = = T = = = G = = = = = = = = ? = = = = (G) = = = ? = = = = (G) = = (G) = T = = T = = = = A = = G = = C = = = = = A = = = C = = = A = = = = = = = = ? = = = = (A) = = = ? = = = = (A) = = (T) = 0 D003 (C) (I) (T) = C C G C = = G = = = = A = T ? C = T A I = = = (G) = = = = = = = = (A) ? = = = = = = (G) = ? (C) = (G) = = = (C) = = (T) (D) (G) = T T A T = = C = = = = G = C ? A = C G D = = = (C) = = = = = = = = (G) ? = = = = = = (A) = ? (T) = (A) = = = (A) = = 0 D004 = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (A) = = (G) = = = A = = = A = = G = = = T = = A = G = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) (G) = = (C) = = = G = = = G = = A = = = A = = G = A = = = G 0 D005 = (I) = = = = = = = = = = = ? = = = = = = = = = = = ? = = = = (T) = = T = = = ? = = T = = = ? ? = ? = A = = = = = = = (D) = = = = = = = = = = = ? = = = = = = = = = = = ? = = = = (C) = = C = = = ? = = C = = = ? ? = ? = G = = = = = = 0 D006 = = = (T) = = = = = = (G) = = = = (A) = (T) (G) (C) = (T) (A) (I) = = = = = = = = (G) = = = (A) = = (A) = = (G) = (G) = (T) (C) = = = (G) = (C) = = = = = (C) = = = = = = (C) = = = = (G) = (C) (T) (A) = (C) (G) (D) = = = = = = = = (A) = = = (G) = = (G) = = (A) = (A) = (A) (T) = = = (A) = (A) = = 0 D007 (C) = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = (A) = = (A) = = = G = = G = = A = A = A ? = = = A = A = = (T) = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = (T) = = (G) = = = A = = A = = G = G = T ? = = = G = C = = 0 D008 = = = (T) = = = = (A) = = = (T) (T) = = = = = = = = = = = = = (G) = = (T) = (G) = = A = = A A = = = T A = = = = = = = ? = = T = = = (C) = = = = (G) = = = (C) (C) = = = = = = = = = = = = = (C) = = (C) = (A) = = G = = G G = = = C G = = = = = = = ? = = G 0 D009 (C) (D) (T) = = = = = = = = = = ? = G = C T A = C G D ? G = = = = T (C) G = = = (A) (G) = = = (A) = = = = = (C) = = = = = (C) = = (T) (I) (G) = = = = = = = = = = ? = A = T G C = T A I ? T = = = = C (G) A = = = (G) (A) = = = (T) = = = = = (T) = = = = = (A) = = 0 D010 = = = = (T) = = = = = = = = = = = = = = ? = = = = = = (T) = = = = = ? C = = = ? = G C = A = A = A = = G = A = = = = = = = = (C) = = = = = = = = = = = = = = ? = = = = = = (G) = = = = = ? T = = = ? = A T = G = G = T = = A = G = = = = 0 D011 C = = C = = = = G = = A = = T = = = = = G = = = = = G = = = C = = = (C) = = = = (G) = = (A) = (A) = (A) = = = = (A) = = = = T = = T = = = = A = = G = = C = = = = = A = = = = = T = = = T = = = (T) = = = = (A) = = (G) = (G) = (T) = = = = (G) = = = = 0 D012 = (I) = (C) = = = = = = = = = = = = = = = = = = = (D) = = = = (A) = = = = C = = = = = G C = = = A = ? = = G = = ? ? ? ? = (D) = (T) = = = = = = = = = = = = = = = = = = = (I) = = = = (G) = = = = T = = = = = A T = = = G = ? = = A = = ? ? ? ? 0 D013 = = = T = C G C = = G = = = = A = T G C = T A I = = = = G = = = = = = = = = = = = = A T A = A = = G A A T = = = = = = C = T A T = = C = = = = G = C T A = C G D = = = = A = = = = = = = = = = = = = G C G = T = = A G G C = = = 0 D014 (C) = = = = = = = (G) = (G) = = ? = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = G = = = ? ? ? (T) = = = = = = = (A) = (C) = = ? = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = A = = = ? ? ? 0 D015 C = = = C = = = G = G = ? = = = = = = = = = = = = G = = = = T = (G) = = = = = (A) (G) = = (A) = = = (A) = (T) = = (A) = = = = T = = = T = = = A = C = ? = = = = = = = = = = = = T = = = = C = (A) = = = = = (G) (A) = = (G) = = = (T) = (A) = = (G) = = = = 0 D016 = = = = = = = = = = = G = = C = = = = = A = = = = = = C = = T C = = = = = = = = = = = = (G) (A) = = = (G) = = = = = = = = = = = = = = = = = A = = T = = = = = G = = = = = = G = = C G = = = = = = = = = = = = (A) (T) = = = (A) = = = = = = 0 D033 (C) = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = (T) = = = = = G = = = = = = = = A = T = = = = = A = = (T) = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = (C) = = = = = A = = = = = = = = T = C = = = = = C = = 0 D034 = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = A T A = A = = G = A T = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = G C G = T = = A = G C = = = 0 D035 (C) = = = (C) = = = (G) = (G) = = = = = = = = = = = = = = = (G) = = = = = (A) = = = = = = (A) = = (G) = = = (T) = = = (G) (G) = = = = (T) = = = (T) = = = (A) = (C) = = = = = = = = = = = = = = = (T) = = = = = (G) = = = = = = (G) = = (A) = = = (A) = = = (A) (A) = = = = 0 D036 C = = C = T A T G = = = = = = G = C T A = C G D = G = = A = T = G = = = = = = = = = = = = = = = = = G = = = = = T = = T = C G C A = = = = = = A = T G C = T A I = T = = G = C = A = = = = = = = = = = = = = = = = = A = = = = = 0 D037 (C) = ? ? (C) = = = (G) = (G) = = = = = = = = = = = = = = = = = = = = = (G) = = A = = = = = = = = A T = = = A = = = = = T (T) = ? ? (T) = = = (A) = (C) = = = = = = = = = = = = = = = = = = = = = (A) = = G = = = = = = = = G A = = = G = = = = = G 0 D038 = = = = = = = = = = = = = ? = = = = = = = = = = (C) = = = = = = = ? = = = A = = A = = G = G = T C = = = G = C = = = = = = = = = = = = = = = ? = = = = = = = = = = (T) = = = = = = = ? = = = G = = G = = A = A = A T = = = A = A = = 0 D039 (C) = = (C) = = = = (G) = = = = (C) = = = = = = = = = = = = = (C) = = = = (G) = = = A = A A = = = = = = = ? = G = = T C = = (T) = = (T) = = = = (A) = = = = (T) = = = = = = = = = = = = = (G) = = = = (A) = = = G = G G = = = = = = = ? = A = = C A = = 0 D040 = = = (T) (C) = = = = = (G) (G) = = (C) = = = = = (A) = = = ? = = = = = = = = = = = = = A = = = A T A = A = = G = A T = = = = = = (C) (T) = = = = = (C) (A) = = (T) = = = = = (G) = = = ? = = = = = = = = = = = = = G = = = G C G = T = = A = G C = = = 0 E001 (C) = = = = = = = (G) (T) = = ? = = = (C) = = = = = = = = = = = = = = = = = = = = = = A ? = G = = = T = = = = G = ? ? ? (T) = = = = = = = (A) (C) = = ? = = = (A) = = = = = = = = = = = = = = = = = = = = = = G ? = A = = = A = = = = A = ? ? ? 0 E002 C = = C = = = = G = = A = = T = = = = = G = = = T = G = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = T = = T = = = = A = = G = = C = = = = = A = = = C = T = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = 0 E003 = = = (T) = = = = (A) = = (G) (T) = (C) = = = = = (A) = = = (C) = (T) = = = = = = = = = A = = A = = G = G = T C = = = G = C = = = = = (C) = = = = (G) = = (A) (C) = (T) = = = = = (G) = = = (T) = (G) = = = = = = = = = G = = G = = A = A = A T = = = A = A = = 0 E004 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E005 C = = = = = = = = = = = T = = = = = = = = = = = = = = = = A = = = = (C) = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = C = = = = = = = = = = = = = = = = T = = = = (T) = = = = = = = = = = = = = = = = = = = = = 0 E006 ? ? = C = = = = G = = A = = T = = = = = G = = = T = G = = = ? = = = (C) = = = = = = = = = = = = = = = = = = = = = ? ? = T = = = = A = = G = = C = = = = = A = = = C = T = = = ? = = = (T) = = = = = = = = = = = = = = = = = = = = = 0 E007 = = = = = = = = = = = ? ? = = = = = = = = = = = (C) = (T) = = (T) = = = = = = A = = A = = G = G = T C = = = G = C = = = = = = = = = = = = = ? ? = = = = = = = = = = = (T) = (G) = = (A) = = = = = = G = = G = = A = A = A T = = = A = A = = 0 E008 (C) = = = = = = = (G) (T) = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = G ? = = G = G = T = = A = G C = = = (T) = = = = = = = (A) (C) = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = A ? = = A = A = A = = G = A T = = = 0 E009 ? ? = = = = = = G T = = = = = = C = = = = = = = = = (G) = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = A C = = = = = = A = = = = = = = = = (T) = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E010 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = 0 E011 (C) = = = = = = = (G) (T) = = = = = = (C) = = = = = = = (C) = (T) = = = = = = = = = = A = A = T G = G = T = = = = G = = = = (T) = = = = = = = (A) (C) = = = = = = (A) = = = = = = = (T) = (G) = = = = = = = = = = G = G = A A = A = A = = = = A = = = = 0 E012 (C) = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = G = G = A A = A = A = = = = A = = = = (T) = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = A = A = T G = G = T = = = = G = = = = 0 E013 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = ? = T = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = ? = C = = = = = = = = = ? = = = = = = = = = = = 0 E014 = = = (T) = = = = = (T) = (G) = = (C) = (C) = = = (A) = = = = = (T) = = (T) = = ? = = = (A) = = (A) = = (G) = (G) = (T) (C) = = = (G) = = = = = = = (C) = = = = = (C) = (A) = = (T) = (A) = = = (G) = = = = = (G) = = (A) = = ? = = = (G) = = (G) = = (A) = (A) = (A) (T) = = = (A) = = = = 0 E015 (C) = = = = = = = (G) (T) = = = = = = (C) = = = = = = = = = = = = (A) = = = = = = A = = A = = G = G = T C = = = G = ? = = (T) = = = = = = = (A) (C) = = = = = = (A) = = = = = = = = = = = = (T) = = = = = = G = = G = = A = A = A T = = = A = ? = = 0 E016 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = A ? = = A = A = A = = G = A T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = G ? = = G = G = T = = A = G C = = = 0 E017 C = = C = = = = G = = A = = T = = = = = G = = = T = G = = = = = = = = = = (G) = (G) = (A) (A) = (A) = (A) = = = = (A) = = = = T = = T = = = = A = = G = = C = = = = = A = = = C = T = = = = = = = = = = (A) = (A) = (T) (G) = (G) = (T) = = = = (G) = = = = 0 E018 C = = C = = = = G = = A = = T = = = = = G = = = T = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = T = = = = A = = G = = C = = = = = A = = = C = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E019 (C) = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = C = = G = G = A A = A = A = = = = A = = = = (T) = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = T = = A = A = T G = G = T = = = = G = = = = 0 E020 C = = C = = = = G = = A = = T = = = = = G = = = = = (G) = = = = = = = = = = ? = = = = = = = = = ? = = = = = = = = T = = T = = = = A = = G = = C = = = = = A = = = = = (T) = = = = = = = = = = ? = = = = = = = = = ? = = = = = = = = 0 E021 = = = T C = = = = = G G = = C = = = = = A = = = C = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = C T = = = = = C A = = T = = = = = G = = = T = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = 0 E022 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = A = = G = G = T C = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = G = = A = A = A T = = = A = = = = 0 E023 C = ? ? = = = = G T = = = = = = C = = = = = = = ? = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = ? ? = = = = A C = = = = = = A = = = = = = = ? = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS ? ? 0.60 = = = = = ? ? = = = = = = = = = = = = = = = = = = = = 0.90 = = = = = = ? = = = = ? ? = = = = = = = = = = = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = = 1.00 = = = 1.00 = = = 0.99 = = = = = = = = ? = = = = 0.52 = = = ? = = = = 0.52 = = 0.52 = 0.54 0.80 0.73 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = 1.00 ? 1.00 = 1.00 1.00 1.00 = = = 0.70 = = = = = = = = 0.57 ? = = = = = = 0.57 = ? 0.57 = 0.57 = = = 0.57 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.59 0.60 = = 0.59 = = = 1.00 = = = 1.00 = = 1.00 = = = 1.00 = = 1.00 = 1.00 = = = 1.00 = 0.51 = = = = = = = = = = = ? = = = = = = = = = = = ? = = = = 0.64 = = 1.00 = = = ? = = 1.00 = = = ? ? = ? = 1.00 = = = = = = = = = 0.81 = = = = = = 0.83 = = = = 0.83 = 0.83 0.83 0.83 = 0.83 0.83 0.83 = = = = = = = = 0.78 = = = 0.74 = = 0.74 = = 0.74 = 0.74 = 0.74 0.74 = = = 0.74 = 0.74 = = 0.51 = = = = = = = 0.50 = = = = = = = = = = = = = = = = = = = = 0.54 = = 0.59 = = = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 ? = = = 1.00 = 1.00 = = = = = 0.51 = = = = 0.51 = = = 0.51 0.51 = = = = = = = = = = = = = 0.51 = = 0.51 = 0.65 = = 1.00 = = 1.00 1.00 = = = 1.00 1.00 = = = = = = = ? = = 1.00 0.73 0.70 0.51 = = = = = = = = = = ? = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 ? 1.00 = = = = 1.00 0.86 1.00 = = = 0.54 0.54 = = = 0.54 = = = = = 0.54 = = = = = 0.54 = = = = = = 0.57 = = = = = = = = = = = = = = ? = = = = = = 0.58 = = = = = ? 1.00 = = = ? = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 = = = = 0.97 = = 0.97 = = = = 0.97 = = 0.97 = = 0.97 = = = = = 0.97 = = = = = 0.97 = = = 0.98 = = = 0.81 = = = = 0.81 = = 0.81 = 0.82 = 0.81 = = = = 0.81 = = = = = 0.57 = 0.57 = = = = = = = = = = = = = = = = = = = 0.64 = = = = 0.63 = = = = 1.00 = = = = = 1.00 1.00 = = = 1.00 = ? = = 1.00 = = ? ? ? ? = = = 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 = = = = = = = = = = = = = 0.98 0.98 0.98 = 0.98 = = 0.98 0.98 0.98 0.98 = = = 0.62 = = = = = = = 0.63 = 0.63 = = ? = = = = = = = = = = = = = = = = = = = = = 0.99 = = = = = = = = = = = = = 0.99 = = = ? ? ? 0.98 = = = 0.98 = = = 0.98 = 0.98 = ? = = = = = = = = = = = = 0.98 = = = = 0.98 = 0.82 = = = = = 0.53 0.62 = = 0.62 = = = 0.62 = 0.53 = = 0.62 = = = = = = = = = = = = = = = 0.98 = = 0.98 = = = = = 0.98 = = = = = = 0.98 = = 0.98 0.98 = = = = = = = = = = = = 0.53 0.53 = = = 0.53 = = = = = = 0.50 = = = = = = = = = = = 0.50 = = = = = = = = = = = = = = = = = 0.53 = = = = = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = 1.00 = = = = = = 0.90 = = = = = = = = = = = = = = = = = = = = = = = = = 0.77 = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = 0.83 = = = 0.83 = = = 0.83 = 0.83 = = = = = = = = = = = = = = = 0.86 = = = = = 0.89 = = = = = = 0.77 = = 0.77 = = = 0.77 = = = 0.77 0.77 = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 = 0.98 = = = = = = = = = = = = = = = = = 0.93 = = = = = 0.56 = ? ? 0.56 = = = 0.56 = 0.56 = = = = = = = = = = = = = = = = = = = = = 0.52 = = 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = ? = = = = = = = = = = 0.53 = = = = = = = ? = = = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = = 0.56 = = 0.56 = = = = 0.56 = = = = 0.56 = = = = = = = = = = = = = 0.56 = = = = 0.52 = = = 1.00 = 1.00 1.00 = = = = = = = ? = 1.00 = = 1.00 1.00 = = = = = 0.52 0.52 = = = = = 0.52 0.52 = = 0.52 = = = = = 0.52 = = = ? = = = = = = = = = = = = = 0.99 = = = 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = 0.67 = = = = = = = 0.67 0.67 = = ? = = = 0.67 = = = = = = = = = = = = = = = = = = = = = = 1.00 ? = 1.00 = = = 1.00 = = = = 1.00 = ? ? ? 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = = 1.00 = = = 0.98 = 0.96 = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = 0.54 = = = = 0.54 = = 0.54 0.54 = 0.54 = = = = = 0.54 = = = 0.54 = 0.55 = = = = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.95 = = = = = = = = = = = 0.95 = = = = = = = = = = = = = = = = 0.93 = = = = 0.62 = = = = = = = = = = = = = = = = = = = = = ? ? = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = = 1.00 = = = 0.98 = 0.97 = = = ? = = = 0.71 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = 0.60 = 0.60 = = 0.60 = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = = 0.67 = = = = = = = 0.67 0.67 = = = = = = 0.67 = = = = = = = = = = = = = = = = = = = = = 1.00 ? = = 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = ? ? = = = = = = 1.00 1.00 = = = = = = 1.00 = = = = = = = = = 0.62 = = 0.61 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = 0.53 = = = = = = = 0.53 0.53 = = = = = = 0.53 = = = = = = = 0.56 = 0.57 = = = = = = = = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = = 1.00 = = = = 0.65 = = = = = = = = = = = 0.65 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.51 = = ? = 1.00 = = = = = = = = = ? = = = = = = = = = = = = = = 0.75 = = = = = 0.75 = 0.75 = = 0.75 = 0.75 = = = 0.75 = = = = = 0.68 = = 0.74 = = ? = = = 0.79 = = 0.79 = = 0.79 = 0.79 = 0.79 0.79 = = = 0.79 = = = = 0.55 = = = = = = = 0.55 0.55 = = = = = = 0.55 = = = = = = = = = = = = 0.52 = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.70 = = = = = = = = 1.00 ? = = 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = 0.98 = = 0.98 = = = = 0.98 = = 0.98 = = 0.98 = = = = = 0.98 = = = 0.99 = 0.99 = = = = = = = = = = 0.64 = 0.64 = 0.64 0.64 = 0.64 = 0.64 = = = = 0.64 = = = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = = 1.00 = = = 0.94 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.69 = = = = = = = = = = = 0.69 = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = = 1.00 = = = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = = 1.00 = = = = = 0.66 = = = = = = = = = = ? = = = = = = = = = ? = = = = = = = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = 1.00 = = = = = 1.00 = = = 0.99 = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 = = = = 1.00 = ? ? = = = = 1.00 1.00 = = = = = = 1.00 = = = = = = = ? = 0.64 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS