Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000115 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 000217 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 000522 CC 17 23 40 CT 2 0 2 TT 0 0 0 0.059 0.000 0.025 000672 CC 0 0 0 CT 4 0 4 TT 17 23 40 0.233 0.000 0.100 001036 AA 0 0 0 AG 2 0 2 GG 19 21 40 0.053 0.000 0.025 001181 AA 17 22 39 AG 5 0 5 GG 1 0 1 0.571 0.000 2.288 001198 AA 1 0 1 AG 4 0 4 GG 18 21 39 1.252 0.000 3.563 001311 AA 19 22 41 AG 4 0 4 GG 1 0 1 1.361 0.000 3.784 001317 CC 23 22 45 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 001318 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 001376 AA 2 0 2 AG 7 1 8 GG 15 20 35 0.730 0.012 2.396 001692 AA 0 0 0 AG 0 1 1 GG 24 21 45 0.000 0.012 0.006 001823 CC 18 22 40 CT 4 0 4 TT 0 0 0 0.220 0.000 0.100 001828 CC 0 0 0 CT 4 0 4 TT 18 22 40 0.220 0.000 0.100 001985 CC 23 21 44 CG 0 1 1 GG 0 0 0 0.000 0.012 0.006 002002 CC 19 22 41 CT 3 0 3 TT 1 0 1 2.457 0.000 5.985 002016 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 002053 AA 20 22 42 AG 3 0 3 GG 0 0 0 0.112 0.000 0.054 002208 CC 0 0 0 CT 3 0 3 TT 21 23 44 0.107 0.000 0.051 002295 CC 16 23 39 CT 5 0 5 TT 0 0 0 0.383 0.000 0.160 002422 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 002434 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 002472 AA 1 0 1 AT 4 0 4 TT 19 23 42 1.361 0.000 3.895 002525 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 002580 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 002829 AA 1 0 1 AG 3 0 3 GG 20 23 43 2.617 0.000 6.306 003047 AA 23 22 45 AG 0 1 1 GG 0 0 0 0.000 0.011 0.006 003142 CC 0 0 0 CT 0 1 1 TT 23 22 45 0.000 0.011 0.006 003175 GG 6 0 6 GT 9 1 10 TT 8 22 30 1.028 0.011 7.456 003215 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 003454 AA 8 0 8 AC 9 1 10 CC 7 22 29 1.484 0.011 10.308 003552 CC 19 22 41 CT 4 0 4 TT 1 0 1 1.361 0.000 3.784 003588 AA 6 21 27 AG 10 1 11 GG 8 0 8 0.621 0.012 8.245 003617 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 003778 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 003891 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 004034 CC 6 22 28 CT 10 1 11 TT 8 0 8 0.621 0.011 8.626 004116 AA 1 0 1 AG 2 0 2 GG 21 23 44 4.959 0.000 10.729 004171 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 004203 AA 23 23 46 AC 1 0 1 CC 0 0 0 0.011 0.000 0.005 004210 GG 8 22 30 GT 12 1 13 TT 4 0 4 0.020 0.011 1.934 004268 CC 0 0 0 CG 1 1 2 GG 23 22 45 0.011 0.011 0.022 004347 CC 2 0 2 CG 7 1 8 GG 14 22 36 0.616 0.011 2.504 004387 CC 21 23 44 CG 2 0 2 GG 0 0 0 0.048 0.000 0.023 004483 GG 22 23 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 004592 AA 5 12 17 AT 9 9 18 TT 9 2 11 0.857 0.028 1.911 004821 GG 6 12 18 GT 9 9 18 TT 9 2 11 1.361 0.028 2.206 005111 CC 2 0 2 CG 3 0 3 GG 19 23 42 5.958 0.000 13.551 005221 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 005249 AA 5 2 7 AC 11 9 20 CC 8 12 20 0.114 0.028 0.289 005479 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 005691 CC 16 12 28 CT 6 10 16 TT 1 1 2 0.195 0.374 0.023 005752 -- 2 0 2 +- 7 1 8 ++ 14 22 36 0.616 0.011 2.504 005789 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 005866 AA 19 23 42 AT 4 0 4 TT 1 0 1 1.361 0.000 3.895 005890 CC 22 23 45 CG 2 0 2 GG 0 0 0 0.045 0.000 0.022 006056 GG 9 2 11 GT 9 9 18 TT 6 12 18 1.361 0.028 2.206 006173 AA 2 0 2 AG 7 1 8 GG 15 22 37 0.730 0.011 2.613 006280 AA 5 2 7 AG 11 9 20 GG 8 12 20 0.114 0.028 0.289 006415 GG 24 22 46 GT 0 1 1 TT 0 0 0 0.000 0.011 0.005 006756 CC 19 23 42 CT 4 0 4 TT 1 0 1 1.361 0.000 3.895 006853 CC 20 23 43 CG 3 0 3 GG 1 0 1 2.617 0.000 6.306 006856 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 006896 CC 15 22 37 CT 7 1 8 TT 2 0 2 0.730 0.011 2.613 006947 CC 8 22 30 CT 12 1 13 TT 4 0 4 0.020 0.011 1.934 007159 AA 17 23 40 AG 5 0 5 GG 0 0 0 0.362 0.000 0.156 007251 CC 1 0 1 CT 4 0 4 TT 18 23 41 1.252 0.000 3.784 007301 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 007412 GG 9 3 12 GT 10 8 18 TT 4 12 16 0.175 0.733 2.056 007571 CC 18 21 39 CT 5 1 6 TT 0 0 0 0.342 0.012 0.230 007580 AA 5 21 26 AG 10 1 11 GG 8 0 8 0.306 0.012 7.862 007759 GG 8 0 8 GT 10 1 11 TT 6 22 28 0.621 0.011 8.626 007795 -- 0 1 1 +- 1 10 11 ++ 23 12 35 0.011 0.374 0.015 007831 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 007965 -- 0 0 0 +- 2 2 4 ++ 22 21 43 0.045 0.048 0.093 008087 AA 0 0 0 AG 1 0 1 GG 21 21 42 0.012 0.000 0.006 008496 CC 23 12 35 CT 1 10 11 TT 0 1 1 0.011 0.374 0.015 008593 GG 20 23 43 GT 3 0 3 TT 1 0 1 2.617 0.000 6.306 008620 -- 1 0 1 +- 4 0 4 ++ 19 23 42 1.361 0.000 3.895 009005 GG 0 0 0 GT 5 0 5 TT 19 23 42 0.324 0.000 0.148 009250 AA 8 22 30 AG 12 1 13 GG 4 0 4 0.020 0.011 1.934 009472 CC 0 0 0 CT 3 1 4 TT 21 22 43 0.107 0.011 0.093 009487 CC 0 0 0 CG 1 2 3 GG 23 21 44 0.011 0.048 0.051 009514 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 009612 AA 15 22 37 AT 7 0 7 TT 2 0 2 0.730 0.000 3.535 009617 AA 0 0 0 AT 1 0 1 TT 23 22 45 0.011 0.000 0.006 009633 CC 8 0 8 CG 10 0 10 GG 6 22 28 0.621 0.000 9.898 009703 GG 8 0 8 GT 10 1 11 TT 6 22 28 0.621 0.011 8.626 009868 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 010115 CC 9 22 31 CT 11 1 12 TT 4 0 4 0.042 0.011 2.659 010265 CC 20 23 43 CT 3 0 3 TT 1 0 1 2.617 0.000 6.306 010505 GG 8 21 29 GT 12 1 13 TT 4 0 4 0.020 0.012 1.801 010541 -- 2 0 2 +- 7 1 8 ++ 15 21 36 0.730 0.012 2.504 010703 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 010727 CC 1 0 1 CT 4 0 4 TT 19 23 42 1.361 0.000 3.895 010898 AA 19 23 42 AG 5 0 5 GG 0 0 0 0.324 0.000 0.148 010965 CC 1 0 1 CG 3 0 3 GG 19 23 42 2.457 0.000 6.146 011491 CC 8 0 8 CT 4 1 5 TT 7 22 29 6.343 0.011 19.566 011628 CC 2 0 2 CG 4 1 5 GG 17 22 39 3.584 0.011 6.790 012102 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 012162 CC 8 0 8 CT 12 1 13 TT 4 22 26 0.020 0.011 5.814 012190 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 012353 CC 0 0 0 CT 2 0 2 TT 22 23 45 0.045 0.000 0.022 012388 AA 0 0 0 AG 0 1 1 GG 23 22 45 0.000 0.011 0.006 012586 AA 7 0 7 AT 10 1 11 TT 4 22 26 0.016 0.011 6.535 012610 AA 0 0 0 AG 0 2 2 GG 23 21 44 0.000 0.048 0.023 012872 AA 6 21 27 AG 9 1 10 GG 7 0 7 0.714 0.012 8.026 012954 CC 7 0 7 CT 9 1 10 TT 6 21 27 0.714 0.012 8.026 012955 AA 0 0 0 AG 1 0 1 GG 21 22 43 0.012 0.000 0.006 013045 CC 8 22 30 CT 12 1 13 TT 4 0 4 0.020 0.011 1.934 013200 CC 14 23 37 CG 6 0 6 GG 0 0 0 0.623 0.000 0.242 013217 AA 0 0 0 AG 0 1 1 GG 15 22 37 0.000 0.011 0.007 013757 CC 8 0 8 CT 10 1 11 TT 6 22 28 0.621 0.011 8.626 013899 AA 0 0 0 AC 5 0 5 CC 19 23 42 0.324 0.000 0.148 014088 CC 20 23 43 CT 2 0 2 TT 0 0 0 0.050 0.000 0.023 014295 GG 21 23 44 GT 1 0 1 TT 0 0 0 0.012 0.000 0.006 014525 -- 0 0 0 +- 2 0 2 ++ 17 23 40 0.059 0.000 0.025 014673 -- 1 0 1 +- 4 0 4 ++ 17 23 40 1.144 0.000 3.673 014739 AA 15 23 38 AG 2 0 2 GG 0 0 0 0.066 0.000 0.026 014884 AA 21 23 44 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 015093 CC 0 0 0 CG 3 0 3 GG 20 23 43 0.112 0.000 0.052 015148 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 015191 AA 8 23 31 AG 11 0 11 GG 4 0 4 0.004 0.000 3.363 015471 CC 24 22 46 CG 0 1 1 GG 0 0 0 0.000 0.011 0.005 015528 CC 5 0 5 CT 9 1 10 TT 8 22 30 0.609 0.011 5.740 015615 AA 5 0 5 AC 9 1 10 CC 8 21 29 0.609 0.012 5.481 015638 CC 20 22 42 CT 2 0 2 TT 0 0 0 0.050 0.000 0.024 015742 AA 0 0 0 AG 2 0 2 GG 21 23 44 0.048 0.000 0.023 015854 CC 19 23 42 CT 4 0 4 TT 0 0 0 0.209 0.000 0.095 016085 GG 21 23 44 GT 1 0 1 TT 0 0 0 0.012 0.000 0.006 016089 AA 0 0 0 AT 4 0 4 TT 18 23 41 0.220 0.000 0.097 016281 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 016668 AA 21 23 44 AG 2 0 2 GG 0 0 0 0.048 0.000 0.023 016684 AA 19 23 42 AG 4 0 4 GG 1 0 1 1.361 0.000 3.895 016925 AA 19 23 42 AG 3 0 3 GG 1 0 1 2.457 0.000 6.146 016934 GG 0 0 0 GT 5 0 5 TT 18 23 41 0.342 0.000 0.152 016951 -- 0 0 0 +- 6 0 6 ++ 14 22 36 0.623 0.000 0.249 017179 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 017424 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.011 0.000 0.005 017713 CC 19 23 42 CG 5 0 5 GG 0 0 0 0.324 0.000 0.148 017914 AA 19 23 42 AC 4 0 4 CC 1 0 1 1.361 0.000 3.895 018094 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 018202 AA 18 23 41 AG 5 0 5 GG 0 0 0 0.342 0.000 0.152 018489 AA 1 0 1 AC 3 0 3 CC 20 23 43 2.617 0.000 6.306 019123 AA 0 0 0 AT 0 1 1 TT 18 21 39 0.000 0.012 0.006 019168 CC 17 22 39 CG 0 0 0 GG 1 0 1 18.000 0.000 40.000 019171 -- 0 0 0 +- 5 1 6 ++ 18 22 40 0.342 0.011 0.224 019573 AA 1 0 1 AC 1 0 1 CC 20 23 43 9.075 0.000 19.316 020034 AA 19 23 42 AG 5 0 5 GG 0 0 0 0.324 0.000 0.148 020056 AA 19 23 42 AG 4 0 4 GG 1 0 1 1.361 0.000 3.895 020370 CC 22 22 44 CG 2 0 2 GG 0 0 0 0.045 0.000 0.023 020473 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 020531 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 020540 CC 8 0 8 CT 10 1 11 TT 6 22 28 0.621 0.011 8.626 020588 CC 21 23 44 CT 2 0 2 TT 0 0 0 0.048 0.000 0.023 020804 CC 21 23 44 CT 2 0 2 TT 0 0 0 0.048 0.000 0.023 021432 AA 18 23 41 AC 4 0 4 CC 2 0 2 3.840 0.000 9.666 021612 CC 19 23 42 CT 5 0 5 TT 0 0 0 0.324 0.000 0.148 021861 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 021862 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 021972 -- 0 0 0 +- 1 0 1 ++ 18 23 41 0.014 0.000 0.006 022294 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 022342 AA 0 0 0 AC 1 0 1 CC 23 23 46 0.011 0.000 0.005 023079 CC 22 22 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 023080 AA 2 0 2 AG 4 0 4 GG 17 22 39 3.584 0.000 9.162 023675 GG 21 22 43 GT 2 0 2 TT 0 0 0 0.048 0.000 0.023 024131 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 024388 AA 0 0 0 AC 0 1 1 CC 24 22 46 0.000 0.011 0.005 024524 GG 21 22 43 GT 1 0 1 TT 0 0 0 0.012 0.000 0.006 024913 AA 0 0 0 AC 5 0 5 CC 18 23 41 0.342 0.000 0.152 025203 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 025528 CC 5 0 5 CT 10 1 11 TT 9 22 31 0.490 0.011 4.980 025568 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 026257 AA 0 0 0 AG 1 0 1 GG 21 21 42 0.012 0.000 0.006 026818 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 027095 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 027349 AA 0 0 0 AG 3 0 3 GG 20 23 43 0.112 0.000 0.052 027493 AA 4 22 26 AT 11 1 12 TT 8 0 8 0.004 0.011 6.780 027608 AA 19 23 42 AG 3 0 3 GG 0 0 0 0.118 0.000 0.054 027912 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 028107 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 028123 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 028128 GG 24 22 46 GT 0 1 1 TT 0 0 0 0.000 0.011 0.005 028245 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 028350 CC 20 23 43 CT 4 0 4 TT 0 0 0 0.198 0.000 0.093 028434 AA 18 23 41 AG 1 0 1 GG 0 0 0 0.014 0.000 0.006 028438 CC 0 0 0 CG 1 0 1 GG 21 23 44 0.012 0.000 0.006 028510 CC 0 0 0 CG 2 0 2 GG 22 22 44 0.045 0.000 0.023 028643 AA 11 22 33 AC 8 1 9 CC 5 0 5 2.003 0.011 7.759 028695 GG 0 0 0 GT 0 2 2 TT 24 21 45 0.000 0.048 0.022 028866 CC 14 23 37 CT 10 0 10 TT 0 0 0 1.662 0.000 0.666 028885 CC 11 22 33 CT 8 1 9 TT 5 0 5 2.003 0.011 7.759 029304 CC 22 18 40 CT 2 0 2 TT 0 0 0 0.045 0.000 0.025 029609 CC 1 0 1 CT 9 1 10 TT 14 22 36 0.091 0.011 0.094 029677 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 029788 AA 11 22 33 AG 11 1 12 GG 2 0 2 0.107 0.011 0.435 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 005752: C 007795: A 007965: C 008620: a 010541: a 014525: C 014673: g 016951: tcct 019171: A 021972: c