Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000115 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 000217 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 000522 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 000672 00000 ------------ T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 001036 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 001181 00000 ------------ A 0.85 1.00 0.92 G 0.15 0.00 0.08 0000 --- --- --- --- 001198 00000 ------------ G 0.87 1.00 0.93 A 0.13 0.00 0.07 0000 --- --- --- --- 001311 00000 ------------ A 0.88 1.00 0.93 G 0.12 0.00 0.07 0000 --- --- --- --- 001317 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 001318 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 001376 00000 ------------ G 0.77 0.98 0.87 A 0.23 0.02 0.13 0000 --- --- --- --- 001692 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 001823 00000 ------------ C 0.91 1.00 0.95 T 0.09 0.00 0.05 0000 --- --- --- --- 001828 00000 ------------ T 0.91 1.00 0.95 C 0.09 0.00 0.05 0000 --- --- --- --- 001985 00062 5' UTR C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 002002 00079 5' UTR C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 002016 00093 5' UTR A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 002053 00130 5' UTR A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 002208 00285 5' UTR T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 002295 00372 NON-SYN C 0.88 1.00 0.94 T 0.12 0.00 0.06 0008 GCA GTA ALA(A) VAL(V) 002422 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 002434 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 002472 00000 ------------ T 0.88 1.00 0.94 A 0.12 0.00 0.06 0000 --- --- --- --- 002525 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 002580 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 002829 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 003047 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 003142 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 003175 00000 ------------ T 0.54 0.98 0.76 G 0.46 0.02 0.24 0000 --- --- --- --- 003215 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 003454 00000 ------------ C 0.48 0.98 0.72 A 0.52 0.02 0.28 0000 --- --- --- --- 003552 00000 ------------ C 0.88 1.00 0.93 T 0.12 0.00 0.07 0000 --- --- --- --- 003588 00000 ------------ A 0.46 0.98 0.71 G 0.54 0.02 0.29 0000 --- --- --- --- 003617 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 003778 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 003891 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 004034 00000 ------------ C 0.46 0.98 0.71 T 0.54 0.02 0.29 0000 --- --- --- --- 004116 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 004171 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 004203 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 004210 00000 ------------ G 0.58 0.98 0.78 T 0.42 0.02 0.22 0000 --- --- --- --- 004268 00000 ------------ G 0.98 0.98 0.98 C 0.02 0.02 0.02 0000 --- --- --- --- 004347 00000 ------------ G 0.76 0.98 0.87 C 0.24 0.02 0.13 0000 --- --- --- --- 004387 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 004483 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 004592 00000 ------------ A 0.41 0.72 0.57 T 0.59 0.28 0.43 0000 --- --- --- --- 004821 00000 ------------ G 0.44 0.72 0.57 T 0.56 0.28 0.43 0000 --- --- --- --- 005111 00000 ------------ G 0.85 1.00 0.93 C 0.15 0.00 0.07 0000 --- --- --- --- 005221 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005249 00000 ------------ C 0.56 0.72 0.64 A 0.44 0.28 0.36 0000 --- --- --- --- 005479 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005691 00000 ------------ C 0.83 0.74 0.78 T 0.17 0.26 0.22 0000 --- --- --- --- 005752 00000 ------------ - 0.24 0.02 0.13 + 0.76 0.98 0.87 0000 --- --- --- --- 005789 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 005866 00000 ------------ A 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 005890 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 006056 00000 ------------ T 0.44 0.72 0.57 G 0.56 0.28 0.43 0000 --- --- --- --- 006173 00703 SYNON G 0.77 0.98 0.87 A 0.23 0.02 0.13 0118 CAG CAA GLN(Q) GLN(Q) 006280 00810 NON-SYN G 0.56 0.72 0.64 A 0.44 0.28 0.36 0154 CGT CAT ARG(R) HIS(H) 006415 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 006756 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 006853 00000 ------------ C 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 006856 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 006896 00964 SYNON C 0.77 0.98 0.87 T 0.23 0.02 0.13 0205 CTC CTT LEU(L) LEU(L) 006947 01015 SYNON C 0.58 0.98 0.78 T 0.42 0.02 0.22 0222 TAC TAT TYR(Y) TYR(Y) 007159 00000 ------------ A 0.89 1.00 0.94 G 0.11 0.00 0.06 0000 --- --- --- --- 007251 00000 ------------ T 0.87 1.00 0.93 C 0.13 0.00 0.07 0000 --- --- --- --- 007301 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 007412 00000 ------------ T 0.39 0.70 0.54 G 0.61 0.30 0.46 0000 --- --- --- --- 007571 01183 SYNON C 0.89 0.98 0.93 T 0.11 0.02 0.07 0278 TAC TAT TYR(Y) TYR(Y) 007580 01192 SYNON A 0.43 0.98 0.70 G 0.57 0.02 0.30 0281 ACA ACG THR(T) THR(T) 007759 00000 ------------ T 0.46 0.98 0.71 G 0.54 0.02 0.29 0000 --- --- --- --- 007795 00000 ------------ - 0.02 0.26 0.14 + 0.98 0.74 0.86 0000 --- --- --- --- 007831 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 007965 00000 ------------ - 0.04 0.04 0.04 + 0.96 0.96 0.96 0000 --- --- --- --- 008087 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 008496 00000 ------------ C 0.98 0.74 0.86 T 0.02 0.26 0.14 0000 --- --- --- --- 008593 00000 ------------ G 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 008620 00000 ------------ - 0.12 0.00 0.06 + 0.88 1.00 0.94 0000 --- --- --- --- 009005 00000 ------------ T 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 009250 00000 ------------ A 0.58 0.98 0.78 G 0.42 0.02 0.22 0000 --- --- --- --- 009472 00000 ------------ T 0.94 0.98 0.96 C 0.06 0.02 0.04 0000 --- --- --- --- 009487 00000 ------------ G 0.98 0.96 0.97 C 0.02 0.04 0.03 0000 --- --- --- --- 009514 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 009612 00000 ------------ A 0.77 1.00 0.88 T 0.23 0.00 0.12 0000 --- --- --- --- 009617 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 009633 00000 ------------ G 0.46 1.00 0.72 C 0.54 0.00 0.28 0000 --- --- --- --- 009703 00000 ------------ T 0.46 0.98 0.71 G 0.54 0.02 0.29 0000 --- --- --- --- 009868 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 010115 01381 SYNON C 0.60 0.98 0.79 T 0.40 0.02 0.21 0344 ACC ACT THR(T) THR(T) 010265 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 010505 00000 ------------ G 0.58 0.98 0.77 T 0.42 0.02 0.23 0000 --- --- --- --- 010541 00000 ------------ - 0.23 0.02 0.13 + 0.77 0.98 0.87 0000 --- --- --- --- 010703 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 010727 00000 ------------ T 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 010898 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 010965 00000 ------------ G 0.89 1.00 0.95 C 0.11 0.00 0.05 0000 --- --- --- --- 011491 00000 ------------ T 0.47 0.98 0.75 C 0.53 0.02 0.25 0000 --- --- --- --- 011628 00000 ------------ G 0.83 0.98 0.90 C 0.17 0.02 0.10 0000 --- --- --- --- 012102 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 012162 00000 ------------ T 0.42 0.98 0.69 C 0.58 0.02 0.31 0000 --- --- --- --- 012190 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012353 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 012388 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 012586 00000 ------------ T 0.43 0.98 0.72 A 0.57 0.02 0.28 0000 --- --- --- --- 012610 00000 ------------ G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 012872 00000 ------------ A 0.48 0.98 0.73 G 0.52 0.02 0.27 0000 --- --- --- --- 012954 00000 ------------ T 0.48 0.98 0.73 C 0.52 0.02 0.27 0000 --- --- --- --- 012955 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013045 00000 ------------ C 0.58 0.98 0.78 T 0.42 0.02 0.22 0000 --- --- --- --- 013200 00000 ------------ C 0.85 1.00 0.93 G 0.15 0.00 0.07 0000 --- --- --- --- 013217 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 013757 00000 ------------ T 0.46 0.98 0.71 C 0.54 0.02 0.29 0000 --- --- --- --- 013899 00000 ------------ C 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 014088 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 014295 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 014525 00000 ------------ - 0.05 0.00 0.02 + 0.95 1.00 0.98 0000 --- --- --- --- 014673 00000 ------------ - 0.14 0.00 0.07 + 0.86 1.00 0.93 0000 --- --- --- --- 014739 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 014884 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 015093 00000 ------------ G 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 015148 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 015191 00000 ------------ A 0.59 1.00 0.79 G 0.41 0.00 0.21 0000 --- --- --- --- 015471 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 015528 00000 ------------ T 0.57 0.98 0.78 C 0.43 0.02 0.22 0000 --- --- --- --- 015615 00000 ------------ C 0.57 0.98 0.77 A 0.43 0.02 0.23 0000 --- --- --- --- 015638 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 015742 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 015854 00000 ------------ C 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 016085 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 016089 00000 ------------ T 0.91 1.00 0.96 A 0.09 0.00 0.04 0000 --- --- --- --- 016281 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 016668 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 016684 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 016925 00000 ------------ A 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 016934 00000 ------------ T 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 016951 00000 ------------ - 0.15 0.00 0.07 + 0.85 1.00 0.93 0000 --- --- --- --- 017179 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 017424 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 017713 00000 ------------ C 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 017914 00000 ------------ A 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 018094 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 018202 00000 ------------ A 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 018489 00000 ------------ C 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 019123 00000 ------------ T 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 019168 00000 ------------ C 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 019171 00000 ------------ - 0.11 0.02 0.07 + 0.89 0.98 0.93 0000 --- --- --- --- 019573 00000 ------------ C 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 020034 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 020056 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 020370 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 020473 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 020531 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 020540 00000 ------------ T 0.46 0.98 0.71 C 0.54 0.02 0.29 0000 --- --- --- --- 020588 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 020804 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 021432 00000 ------------ A 0.83 1.00 0.91 C 0.17 0.00 0.09 0000 --- --- --- --- 021612 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 021861 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 021862 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 021972 00000 ------------ - 0.03 0.00 0.01 + 0.97 1.00 0.99 0000 --- --- --- --- 022294 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 022342 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 023079 02035 SYNON C 0.98 1.00 0.99 T 0.02 0.00 0.01 0562 TTC TTT PHE(F) PHE(F) 023080 02036 NON-SYN G 0.83 1.00 0.91 A 0.17 0.00 0.09 0563 GCC ACC ALA(A) THR(T) 023675 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 024131 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 024388 00000 ------------ C 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 024524 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 024913 00000 ------------ C 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 025203 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 025528 00000 ------------ T 0.58 0.98 0.78 C 0.42 0.02 0.22 0000 --- --- --- --- 025568 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 026257 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 026818 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 027095 02485 NON-SYN G 0.98 1.00 0.99 C 0.02 0.00 0.01 0712 TTG TTC LEU(L) PHE(F) 027349 02739 3' UTR G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 027493 02883 3' UTR A 0.41 0.98 0.70 T 0.59 0.02 0.30 0000 --- --- --- --- 027608 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 027912 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 028107 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 028123 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 028128 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 028245 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 028350 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 028434 00000 ------------ A 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 028438 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 028510 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 028643 00000 ------------ A 0.62 0.98 0.80 C 0.38 0.02 0.20 0000 --- --- --- --- 028695 00000 ------------ T 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 028866 00000 ------------ C 0.79 1.00 0.89 T 0.21 0.00 0.11 0000 --- --- --- --- 028885 00000 ------------ C 0.62 0.98 0.80 T 0.38 0.02 0.20 0000 --- --- --- --- 029304 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 029609 00000 ------------ T 0.77 0.98 0.87 C 0.23 0.02 0.13 0000 --- --- --- --- 029677 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 029788 00000 ------------ A 0.69 0.98 0.83 G 0.31 0.02 0.17 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 005752: C 007795: A 007965: C 008620: A 010541: A 014525: C 014673: G 016951: TCCT 019171: A 021972: C