Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000138 G 6 13 19 A 40 33 73 000248 A 2 0 2 G 44 46 90 000305 A 1 0 1 G 45 46 91 000987 A 2 0 2 C 44 46 90 001175 * 001533 A 2 3 5 C 34 41 75 001612 A 0 1 1 C 40 41 81 001614 C 1 0 1 G 37 42 79 001851 T 2 0 2 C 42 46 88 001930 T 1 0 1 C 43 44 87 001953 T 1 0 1 G 43 44 87 002114 T 1 0 1 G 45 42 87 003698 A 1 0 1 G 47 46 93 003760 G 0 1 1 T 48 45 93 003889 G 0 1 1 C 48 45 93 003968 C 21 19 40 T 27 27 54 004195 C 1 0 1 T 47 46 93 004417 C 3 0 3 T 45 42 87 004534 G 4 0 4 C 44 42 86 005093 T 0 1 1 C 48 45 93 005122 + 5 13 18 - 43 33 76 005137 T 0 1 1 C 48 45 93 005173 T 3 0 3 C 45 46 91 005223 T 3 13 16 C 45 33 78 005263 T 1 0 1 C 47 46 93 005359 T 3 13 16 C 45 33 78 005505 A 1 0 1 G 45 46 91 005537 A 0 1 1 G 46 45 91 005900 G 2 0 2 C 40 46 86 006147 G 4 13 17 A 38 33 71 006525 T 1 0 1 C 39 46 85 006577 T 0 2 2 C 40 44 84 007118 C 0 3 3 T 44 39 83 007141 T 2 0 2 C 44 42 86 007428 G 0 2 2 A 48 42 90 007508 T 5 0 5 C 43 44 87 007880 T 5 0 5 C 43 44 87 008116 T 1 0 1 G 47 42 89 008129 C 5 11 16 T 43 31 74 008213 A 5 11 16 C 43 31 74 008331 G 5 11 16 C 43 31 74 008454 T 3 11 14 C 45 31 76 008773 C 0 1 1 T 44 43 87 008895 T 1 0 1 C 43 44 87 009039 A 8 3 11 G 36 39 75 009569 T 2 0 2 G 44 46 90 009733 A 3 12 15 T 43 34 77 009769 C 5 13 18 T 41 33 74 010761 T 2 0 2 C 46 44 90 010880 A 3 13 16 G 45 31 76 011147 G 5 12 17 A 39 28 67 011198 C 3 12 15 G 41 28 69 011324 A 3 12 15 G 41 28 69 011534 C 5 12 17 T 43 32 75 011537 G 0 1 1 A 48 43 91 011639 A 0 1 1 G 48 43 91 011650 T 5 12 17 A 43 32 75 012305 + 5 12 17 - 43 32 75 012435 - 4 13 17 + 40 33 73 012571 C 6 13 19 A 42 33 75 012576 G 6 13 19 A 42 33 75 012715 + 4 0 4 - 40 44 84 013106 T 3 11 14 C 43 31 74 013607 T 5 13 18 C 43 33 76 013611 G 1 0 1 A 47 46 93 013647 T 1 0 1 C 47 46 93 013659 T 1 0 1 C 47 46 93 014147 C 1 0 1 A 47 46 93 014255 T 2 0 2 C 46 46 92 014409 A 2 3 5 G 46 43 89 014514 T 1 0 1 G 47 46 93 014526 C 5 13 18 A 43 33 76 014545 - 1 0 1 + 47 44 91 014634 T 2 0 2 G 42 46 88 015012 C 5 13 18 T 43 33 76 015316 G 5 13 18 A 43 33 76 015319 T 5 13 18 A 43 33 76 015525 T 1 0 1 G 47 46 93 015534 A 1 0 1 G 47 46 93 015694 T 2 0 2 C 46 46 92 016030 A 0 1 1 G 44 45 89 016185 A 5 13 18 G 39 33 72 016252 + 18 6 24 - 26 40 66 016816 T 1 0 1 C 47 46 93 016968 A 0 1 1 G 48 45 93 017116 T 11 13 24 C 37 33 70 017191 C 1 0 1 G 47 46 93 017327 A 3 3 6 G 45 43 88 017336 G 11 13 24 A 37 33 70 017360 G 0 1 1 C 48 43 91 017793 A 1 0 1 G 47 44 91 017889 T 0 1 1 C 48 43 91 018027 C 2 0 2 G 46 46 92 018141 - 4 13 17 + 44 33 77 018262 A 1 0 1 G 47 46 93 018374 C 5 2 7 T 43 44 87 018459 G 1 0 1 A 47 46 93 018460 C 1 0 1 T 47 46 93 018605 T 6 13 19 C 42 33 75 018701 A 6 13 19 T 42 33 75 018723 A 2 0 2 G 46 46 92 018841 G 4 13 17 T 44 33 77 019085 A 0 1 1 G 48 45 93 019123 A 0 1 1 G 48 45 93 019260 C 5 0 5 T 43 46 89 019361 C 4 13 17 T 44 33 77 019385 C 6 13 19 T 42 33 75 019516 C 6 13 19 T 42 33 75 019651 C 6 13 19 T 42 33 75 019778 C 3 0 3 T 43 46 89 019838 T 1 0 1 C 45 40 85 019850 T 1 0 1 C 45 40 85 019942 - 4 13 17 + 44 33 77 020037 G 11 13 24 A 35 33 68 020445 A 1 0 1 G 47 44 91 020488 C 0 1 1 T 48 43 91 020754 G 0 1 1 T 48 45 93 020877 A 2 0 2 G 46 46 92 021132 T 2 0 2 A 46 46 92 021156 A 1 0 1 G 47 46 93 021195 C 12 13 25 T 36 33 69 021234 T 0 1 1 C 48 45 93 021235 A 1 0 1 G 47 46 93 021551 C 2 0 2 T 46 46 92 021833 - 1 0 1 + 47 46 93 021972 C 6 13 19 T 42 33 75 021984 A 1 0 1 G 47 46 93 022069 G 1 0 1 T 47 46 93 022142 T 1 0 1 C 47 46 93 022279 A 0 2 2 G 46 44 90 022306 A 1 0 1 G 45 46 91 022384 A 0 1 1 G 44 45 89 022452 G 0 1 1 C 48 45 93 022654 T 5 13 18 C 41 33 74 022850 G 0 1 1 T 46 45 91 022881 T 1 0 1 C 45 46 91 022919 A 2 0 2 G 44 46 90 023671 T 1 2 3 C 37 40 77 023866 T 1 0 1 C 47 42 89 023992 G 1 0 1 C 47 42 89 024038 T 1 0 1 C 47 44 91 024198 G 4 12 16 C 42 30 72 024355 T 4 13 17 C 44 33 77 024410 - 4 13 17 + 40 33 73 024594 A 1 0 1 G 47 46 93 024710 G 11 13 24 A 37 33 70 025026 G 11 13 24 A 37 33 70 025039 C 2 0 2 T 46 46 92 025073 T 0 1 1 C 48 45 93 025098 C 11 13 24 T 37 33 70 025165 T 3 0 3 C 45 46 91 025263 T 2 0 2 C 46 46 92 025373 C 1 0 1 G 47 46 93 025431 T 4 13 17 C 44 33 77 025468 T 2 0 2 C 46 46 92 025581 T 2 0 2 C 44 40 84 025920 T 3 12 15 C 41 28 69 026041 T 0 2 2 C 44 38 82 027763 A 4 13 17 G 44 33 77 027858 C 2 0 2 T 46 46 92 027956 + 6 13 19 - 42 33 75 029049 T 4 0 4 C 40 38 78 029290 T 2 0 2 C 44 40 84 029391 T 4 11 15 C 42 29 71 029544 G 1 0 1 C 45 40 85 029935 A 1 0 1 G 45 46 91 030009 A 1 0 1 G 45 46 91 030147 A 2 0 2 G 46 46 92 030324 A 4 0 4 G 44 46 90 030461 A 1 0 1 G 47 46 93 030701 T 1 0 1 C 41 42 83 030896 G 2 0 2 C 40 44 84 031185 A 5 11 16 G 37 31 68 031189 C 0 2 2 T 42 42 84 031347 C 5 11 16 T 37 31 68 031404 G 5 12 17 A 37 30 67 031878 - 2 0 2 + 46 46 92 032026 - 0 1 1 + 48 45 93 032155 T 2 0 2 C 44 46 90 032226 T 1 0 1 C 47 40 87 032234 G 11 11 22 A 37 29 66 032337 A 4 11 15 G 44 29 73 032697 A 2 0 2 G 46 40 86 032743 T 4 11 15 C 44 29 73 032874 - 2 0 2 + 46 38 84 033106 T 4 0 4 C 32 38 70 033209 T 3 5 8 C 33 33 66 034895 - 4 13 17 + 44 31 75 035264 T 0 1 1 C 48 43 91 035424 T 1 0 1 G 47 44 91 035699 T 1 0 1 G 45 46 91 035821 G 20 18 38 A 24 24 48 035927 A 1 3 4 G 43 41 84 035960 G 1 0 1 C 43 44 87 036185 A 1 3 4 G 43 41 84 036380 T 3 0 3 C 41 42 83 036728 * 036731 T 1 3 4 C 47 43 90 036928 A 1 3 4 T 45 43 88 036963 T 0 1 1 C 46 45 91 037002 A 3 0 3 G 43 46 89 037046 C 1 0 1 T 45 46 91 037087 T 2 0 2 C 44 46 90 037419 T 1 3 4 G 47 43 90 037642 + 1 1 2 - 47 45 92 037649 C 12 15 27 T 36 31 67 037779 G 22 23 45 A 26 23 49 037863 A 3 0 3 G 45 46 91 037882 - 2 0 2 + 46 46 92 037911 A 22 23 45 G 26 23 49 038314 A 3 0 3 C 33 40 73 038342 G 5 8 13 C 33 30 63 038480 T 1 0 1 C 39 38 77 038660 T 3 0 3 C 37 38 75 038941 + 7 12 19 - 37 30 67 038987 T 1 0 1 C 43 42 85 039539 C 1 0 1 G 41 40 81 039626 + 19 14 33 - 23 26 49 039741 A 0 1 1 G 42 43 85 039866 A 2 0 2 G 40 44 84 040001 T 0 1 1 G 42 43 85 040092 T 3 0 3 C 39 44 83 040117 T 13 6 19 C 29 38 67 040122 G 1 0 1 A 41 44 85 040124 G 1 0 1 C 41 44 85 040149 A 1 0 1 T 41 44 85 040168 C 4 14 18 T 38 30 68 040395 A 0 2 2 G 46 44 90 040420 A 0 1 1 G 46 45 91 040527 - 0 1 1 + 46 45 91 040601 - 2 0 2 + 44 44 88 040754 T 13 11 24 C 29 33 62 040756 T 1 0 1 C 41 46 87 040818 A 5 10 15 G 35 36 71 041133 G 2 3 5 A 46 43 89 041191 G 22 20 42 A 26 26 52 041627 - 22 17 39 + 26 27 53 041705 + 4 13 17 - 42 33 75 041824 + 9 6 15 - 37 40 77 041841 G 6 13 19 A 38 33 71 042004 A 3 10 13 C 45 36 81 042068 T 1 0 1 C 47 46 93 042294 C 16 19 35 T 32 27 59 042349 T 0 1 1 C 48 45 93 042451 T 7 0 7 G 41 46 87 042539 A 1 0 1 G 47 46 93 042579 A 1 0 1 G 47 46 93 042809 G 17 19 36 C 31 27 58 042959 + 4 0 4 - 44 46 90 043086 C 17 19 36 T 31 27 58 043158 - 1 0 1 + 47 46 93 043324 C 15 17 32 T 27 23 50 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 005122: AG 012305: gagg 012435: AGAG 012715: C 014545: AG 016252: TGCTGGGCGAGCCGTG 018141: AG 019942: TCATAAAAGCCATAATAGTTGCT 021833: CAAAA 024410: GCATTTCTGCGGTGCACAGAGCTAGTCGCT 027956: G 031878: c 032026: C 032874: ag 034895: GTCCCGTCTTCCCTTC 037642: C 037882: GAGGATGGG 038941: TT 039626: A 040527: C 040601: ATAATT 041627: GG 041705: AG 041824: A 042959: CCCATCCCT 043158: TTG Tri-allelic sites: Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop Allele3 AD-pop ED-pop Total-pop 001175 C 2 0 2 G 8 13 21 A 38 33 71 036728 C 2 0 2 A 2 4 6 G 44 42 86