Site      Genotype1 AD-pop    ED-pop    Total-pop Genotype2 AD-pop    ED-pop    Total-pop Genotype3 AD-pop    ED-pop    Total-pop AD-chi2   ED-chi2   Total-chi2
000316    CC        20        22        42        CT        3         0         3         TT        1         0         1         2.617     0.000     6.146     
000887    CC        18        23        41        CT        6         0         6         TT        0         0         0         0.490     0.000     0.218     
003741    CC        0         0         0         CG        1         0         1         GG        22        21        43        0.011     0.000     0.006     
003878    --        5         16        21        +-        13        5         18        ++        5         0         5         0.391     0.383     0.144     
004058    CC        0         1         1         CT        1         0         1         TT        19        17        36        0.013     18.000    16.202    
004077    CC        20        17        37        CG        2         1         3         GG        0         0         0         0.050     0.015     0.061     
004163    CC        1         0         1         CG        0         0         0         GG        21        22        43        22.000    0.000     44.000    
004802    GG        0         0         0         GT        0         1         1         TT        23        22        45        0.000     0.011     0.006     
005609    CC        0         0         0         CG        5         2         7         GG        13        18        31        0.468     0.055     0.391     
005746    AA        0         0         0         AG        0         1         1         GG        19        21        40        0.000     0.012     0.006     
005796    CC        0         0         0         CG        6         0         6         GG        14        22        36        0.623     0.000     0.249     
005799    AA        0         0         0         AC        2         1         3         CC        18        21        39        0.055     0.012     0.058     
006525    AA        0         0         0         AG        0         2         2         GG        22        19        41        0.000     0.053     0.024     
007330    AA        20        21        41        AC        2         2         4         CC        0         0         0         0.050     0.048     0.097     
007584    AA        17        19        36        AT        3         0         3         TT        1         0         1         2.136     0.000     5.184     
007826    CC        0         0         0         CT        3         0         3         TT        16        20        36        0.140     0.000     0.062     
008326    CC        23        22        45        CG        1         0         1         GG        0         0         0         0.011     0.000     0.006     
008562    AA        0         1         1         AC        0         3         3         CC        24        19        43        0.000     2.457     6.306     
008845    --        10        0         10        +-        10        5         15        ++        4         18        22        0.296     0.342     4.729     

Note:

AD: African_Descent
ED: European_Descent
Total: All_population
pop : population

Diallelic insertion/deletion polymorphisms are represented as:

+ : insertion allele
- : deletion allele

The + (inserted) allele for each site is listed below:

003878: CTGGA
008845: g