Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000082 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 000446 00000 ------------ T 1.00 0.91 0.96 A 0.00 0.09 0.04 0000 --- --- --- --- 000891 00000 ------------ - 0.55 0.02 0.28 + 0.45 0.98 0.72 0000 --- --- --- --- 001399 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 001739 00000 ------------ A 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 002262 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 002278 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 002712 -----** NON-SYN A 0.96 1.00 0.98 G 0.04 0.00 0.02 ----*** CAA CGA GLN(Q) ARG(R) 002737 -----** SYNON A 0.96 1.00 0.98 G 0.04 0.00 0.02 ----*** GAA GAG GLU(E) GLU(E) 005595 00000 ------------ T 0.86 1.00 0.93 A 0.14 0.00 0.07 0000 --- --- --- --- 008686 00000 ------------ T 0.85 0.90 0.88 C 0.15 0.10 0.12 0000 --- --- --- --- 008888 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 009363 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 009623 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 009733 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 012255 00000 ------------ T 0.89 0.33 0.61 G 0.11 0.67 0.39 0000 --- --- --- --- 012590 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 012712 00000 ------------ G 0.98 0.98 0.98 A 0.02 0.02 0.02 0000 --- --- --- --- 013429 00000 ------------ A 0.93 0.37 0.64 T 0.07 0.63 0.36 0000 --- --- --- --- 013516 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 013529 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 013771 00000 ------------ C 0.98 0.98 0.98 T 0.02 0.02 0.02 0000 --- --- --- --- 014193 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 014441 00000 ------------ C 1.00 0.88 0.94 G 0.00 0.12 0.06 0000 --- --- --- --- 014897 00000 ------------ T 0.79 0.91 0.85 A 0.21 0.09 0.15 0000 --- --- --- --- 015099 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 015513 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 015731 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 017286 00000 ------------ T 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 017486 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 017679 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 017776 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 017914 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 018043 00000 ------------ G 0.69 1.00 0.85 A 0.31 0.00 0.15 0000 --- --- --- --- 018295 00000 ------------ G 0.94 0.80 0.86 A 0.06 0.20 0.14 0000 --- --- --- --- 018330 00000 ------------ G 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 019113 00000 ------------ A 0.85 0.33 0.59 T 0.15 0.67 0.41 0000 --- --- --- --- 019249 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 019289 00000 ------------ T 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 019306 00000 ------------ T 0.74 1.00 0.87 C 0.26 0.00 0.13 0000 --- --- --- --- 019347 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 020048 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 020176 00000 ------------ C 0.94 0.95 0.95 G 0.06 0.05 0.05 0000 --- --- --- --- 020655 00000 ------------ G 0.75 1.00 0.88 A 0.25 0.00 0.12 0000 --- --- --- --- 020693 00000 ------------ G 0.31 0.74 0.52 A 0.69 0.26 0.48 0000 --- --- --- --- 020867 00000 ------------ A 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 020878 00000 ------------ C 0.80 0.33 0.57 T 0.20 0.67 0.43 0000 --- --- --- --- 021249 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 023980 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 024046 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 024393 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 024564 00000 ------------ - 0.00 0.02 0.01 + 1.00 0.98 0.99 0000 --- --- --- --- 038054 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 038354 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 038466 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 038580 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 038650 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 038701 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 038807 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 038829 00000 ------------ G 0.65 0.72 0.68 A 0.35 0.28 0.32 0000 --- --- --- --- 038835 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 039162 00000 ------------ C 0.54 0.98 0.76 T 0.46 0.02 0.24 0000 --- --- --- --- 039196 00000 ------------ C 0.98 0.98 0.98 T 0.02 0.02 0.02 0000 --- --- --- --- 039431 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 042910 00000 ------------ C 0.98 0.98 0.98 A 0.02 0.02 0.02 0000 --- --- --- --- 042947 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 043224 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 043236 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 043269 00000 ------------ C 0.85 0.78 0.82 T 0.15 0.22 0.18 0000 --- --- --- --- 043502 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 043562 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 044372 00000 ------------ T 0.98 0.98 0.98 G 0.02 0.02 0.02 0000 --- --- --- --- 044697 00000 ------------ A 0.98 0.98 0.98 G 0.02 0.02 0.02 0000 --- --- --- --- 044703 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 044769* 044774 00000 ------------ A 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 044790 00000 ------------ A 0.81 1.00 0.90 G 0.19 0.00 0.10 0000 --- --- --- --- 044832 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 044912 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 045400 -----** SYNON C 1.00 0.98 0.99 T 0.00 0.02 0.01 ----*** AAC AAT ASN(N) ASN(N) 045686 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 046178 00000 ------------ G 0.70 0.63 0.66 A 0.30 0.37 0.34 0000 --- --- --- --- 046837 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 046881 00000 ------------ C 0.87 1.00 0.93 G 0.13 0.00 0.07 0000 --- --- --- --- 047002 00000 ------------ G 0.98 0.74 0.86 A 0.02 0.26 0.14 0000 --- --- --- --- 047154 00000 ------------ C 0.90 0.87 0.89 G 0.10 0.13 0.11 0000 --- --- --- --- 047364 00000 ------------ G 0.98 0.95 0.97 A 0.02 0.05 0.03 0000 --- --- --- --- 047583 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 047664 00000 ------------ C 1.00 0.95 0.98 A 0.00 0.05 0.02 0000 --- --- --- --- 047673 00000 ------------ A 0.66 0.76 0.71 C 0.34 0.24 0.29 0000 --- --- --- --- 047677 00000 ------------ G 0.91 0.88 0.90 A 0.09 0.12 0.10 0000 --- --- --- --- 047747 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 047783 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 048111 00000 ------------ G 0.91 0.87 0.89 A 0.09 0.13 0.11 0000 --- --- --- --- 048342 00000 ------------ C 1.00 0.95 0.98 G 0.00 0.05 0.02 0000 --- --- --- --- 048516 00000 ------------ A 0.92 0.87 0.89 T 0.08 0.13 0.11 0000 --- --- --- --- 048548 00000 ------------ G 0.88 1.00 0.94 A 0.12 0.00 0.06 0000 --- --- --- --- 049160 -----** 3' UTR A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 049276 -----** 3' UTR A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 049487 00000 ------------ - 0.00 0.03 0.01 + 1.00 0.97 0.99 0000 --- --- --- --- 049577 00000 ------------ A 0.93 0.87 0.90 G 0.07 0.13 0.10 0000 --- --- --- --- 049837 00000 ------------ - 0.02 0.04 0.03 + 0.98 0.96 0.97 0000 --- --- --- --- 049847 00000 ------------ A 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 050342 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 050631 00000 ------------ T 0.70 0.67 0.68 G 0.30 0.33 0.32 0000 --- --- --- --- 050680 00000 ------------ G 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 051118 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 051137 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 051617 00000 ------------ A 0.98 0.98 0.98 T 0.02 0.02 0.02 0000 --- --- --- --- 051649 00000 ------------ C 0.91 1.00 0.96 G 0.09 0.00 0.04 0000 --- --- --- --- 051955 00000 ------------ T 0.75 0.80 0.78 C 0.25 0.20 0.22 0000 --- --- --- --- 052147 00000 ------------ C 0.74 0.80 0.77 A 0.26 0.20 0.23 0000 --- --- --- --- 052404 00000 ------------ T 0.86 1.00 0.93 C 0.14 0.00 0.07 0000 --- --- --- --- *** Sites are not mapped to the complete CDS. NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 000891: T 001399: T 024564: A 042947: CTAC 049487: GTAA 049837: A The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 044769 A 0.17 0.48 0.32 G 0.79 0.52 0.66 T 0.04 0.00 0.02