Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000061 C 7 0 7 A 41 46 87 000201 G 0 3 3 A 48 43 91 000361 C 1 14 15 T 43 30 73 000704 A 0 1 1 T 48 45 93 000729 T 6 0 6 A 42 46 88 000744 G 5 0 5 T 43 46 89 001041 G 4 0 4 A 44 44 88 001113 A 0 3 3 G 48 41 89 001190 G 0 2 2 T 46 42 88 001487 A 1 0 1 G 47 44 91 001610 C 9 0 9 T 39 46 85 002137 G 1 0 1 T 35 28 63 008994 A 6 0 6 T 42 44 86 009089 G 1 0 1 A 47 46 93 009281 A 1 0 1 G 47 46 93 009292 C 9 23 32 T 39 23 62 009352 G 6 0 6 T 42 46 88 009369 A 9 0 9 G 39 46 85 011760 T 2 5 7 C 46 39 85 011973 C 1 0 1 T 47 44 91 011993 - 1 17 18 + 45 27 72 012084 T 10 0 10 G 38 44 82 012120 C 2 0 2 T 46 44 90 012329 G 1 0 1 A 47 44 91 012501 G 1 0 1 A 47 46 93 012576 A 0 1 1 G 48 43 91 012586 T 2 6 8 A 46 38 84 012590 C 1 0 1 T 47 44 91 012591 A 1 0 1 T 47 44 91 012631 G 6 6 12 A 42 38 80 012791 A 6 0 6 C 42 44 86 012945 C 1 0 1 A 47 38 85 013403 A 8 15 23 G 40 29 69 014018 A 1 12 13 T 47 32 79 014062 T 1 12 13 C 47 32 79 014947 T 1 0 1 A 47 46 93 015341 G 13 29 42 A 31 17 48 015589 G 9 0 9 A 39 46 85 015665 G 6 0 6 A 42 46 88 016291 A 2 0 2 G 42 46 88 016493 A 11 0 11 G 37 46 83 016545 G 9 0 9 A 39 46 85 016555 A 1 0 1 G 47 46 93 017189 C 1 1 2 T 41 41 82 017264 G 1 0 1 A 41 42 83 017379 C 1 13 14 A 41 29 70 019952 A 1 0 1 C 47 46 93 020027 A 0 1 1 G 48 45 93 020089 C 10 17 27 T 38 29 67 020379 A 1 0 1 G 47 44 91 020428 T 1 0 1 C 47 44 91 024630 G 0 1 1 A 46 45 91 024776 A 2 6 8 G 44 40 84 025241 G 1 14 15 A 47 32 79 025320 C 1 0 1 T 45 46 91 025517 A 2 0 2 G 42 46 88 025785 C 2 0 2 T 44 46 90 025831 - 11 0 11 + 35 46 81 025836 G 3 0 3 T 43 46 89 025843 A 1 0 1 T 45 46 91 026008 C 1 14 15 A 47 32 79 026133 G 1 0 1 A 45 46 91 026415 G 1 13 14 A 45 29 74 026668 G 0 1 1 A 46 43 89 029838 T 2 0 2 C 44 46 90 030112 G 0 3 3 T 48 41 89 030200 C 1 0 1 T 47 46 93 030255 A 1 0 1 G 47 46 93 030302 A 19 24 43 G 29 22 51 030449 G 4 0 4 A 44 46 90 030570 A 11 0 11 G 37 46 83 030716 G 16 6 22 A 32 40 72 031177 T 1 14 15 C 45 30 75 031234 + 1 0 1 - 47 44 91 031566 T 2 0 2 A 46 46 92 031722 C 12 5 17 A 32 35 67 031786 C 5 0 5 G 41 42 83 031968 A 1 0 1 G 45 44 89 031989 G 1 11 12 A 45 33 78 033745 C 1 3 4 T 47 43 90 033852 G 17 17 34 A 31 29 60 034006 G 17 17 34 A 31 29 60 034036 T 1 0 1 C 47 46 93 034200 T 1 0 1 A 47 46 93 034544 A 4 4 8 G 44 40 84 034669 A 1 0 1 G 47 42 89 034713 G 10 2 12 A 36 38 74 034831 G 1 11 12 A 45 33 78 035006 G 2 0 2 A 46 44 90 035145 G 4 4 8 C 44 42 86 035392 C 13 0 13 T 35 44 79 035405 A 1 0 1 T 47 44 91 035461 C 1 11 12 T 47 33 80 035584 C 18 26 44 T 30 18 48 035594 C 1 1 2 G 47 43 90 035603 A 12 13 25 G 36 33 69 035715 G 18 28 46 A 30 18 48 035718 T 1 0 1 C 47 46 93 037652 G 0 1 1 C 48 43 91 037790 T 1 0 1 G 45 44 89 037885 T 1 1 2 G 35 37 72 038199 T 1 1 2 C 47 45 92 038294 T 0 1 1 C 48 45 93 038479 G 11 2 13 A 37 44 81 038509 G 1 0 1 A 41 46 87 038690 A 8 10 18 C 40 36 76 038692 C 0 1 1 T 48 45 93 038908 G 1 0 1 T 47 46 93 038926 G 2 0 2 C 46 46 92 038940 - 5 15 20 + 43 31 74 039063 C 14 27 41 T 34 11 45 039163 C 12 2 14 T 36 40 76 039222 T 8 11 19 C 40 31 71 039275 T 5 21 26 C 43 21 64 039300 T 12 0 12 G 36 42 78 039477 G 22 10 32 T 24 36 60 039709 + 13 1 14 - 35 45 80 041410 T 7 1 8 C 33 33 66 042441 G 1 0 1 A 45 40 85 042547 G 16 13 29 A 20 21 41 042746 T 4 0 4 A 40 44 84 042825 A 15 0 15 G 31 44 75 042843 C 4 0 4 A 42 46 88 042982 A 1 0 1 G 47 44 91 043146 G 8 10 18 A 40 34 74 043607 A 2 0 2 G 46 44 90 043613 G 22 3 25 T 26 41 67 043748 G 12 1 13 A 36 45 81 043801 T 1 0 1 A 47 46 93 043893 C 1 1 2 T 47 45 92 044025 G 1 0 1 T 47 46 93 044555 T 14 10 24 G 20 32 52 044609 T 9 10 19 G 33 34 67 045128 + 12 1 13 - 36 45 81 045540 A 20 5 25 C 24 37 61 045642 G 4 0 4 A 42 46 88 045706 A 1 1 2 G 47 45 92 046011 G 12 1 13 A 36 43 79 046042 G 22 7 29 A 26 37 63 046187 - 12 1 13 + 36 43 79 046196 A 16 7 23 T 12 35 47 046224 G 10 25 35 C 20 17 37 046262 T 1 4 5 G 35 40 75 046365 C 1 10 11 T 43 34 77 046639 T 11 1 12 G 35 43 78 046672 C 23 7 30 T 25 39 64 046987 T 1 0 1 C 45 44 89 047190 C 8 10 18 T 40 34 74 047224 T 8 10 18 C 40 34 74 047538 A 13 27 40 G 35 19 54 047561 A 1 11 12 G 47 35 82 047613 A 1 11 12 C 47 35 82 047624 A 1 0 1 G 47 46 93 047632 T 2 0 2 G 46 46 92 047791 T 1 11 12 C 45 35 80 047796 T 21 8 29 A 25 38 63 047820 A 21 6 27 G 25 38 63 047822 A 5 16 21 G 41 28 69 048011 G 0 1 1 A 48 45 93 048151 G 23 7 30 A 25 39 64 048487 G 11 1 12 A 37 43 80 048788 C 23 6 29 T 25 28 53 048857 G 20 6 26 A 24 32 56 048859 G 20 6 26 A 22 32 54 048935 T 16 6 22 G 24 34 58 048979 A 21 6 27 G 27 36 63 049038 A 3 0 3 G 45 46 91 049198 - 24 18 42 + 24 28 52 049349 C 1 3 4 T 31 39 70 049399 C 7 27 34 T 31 17 48 049425 T 19 18 37 C 23 28 51 049787 T 5 17 22 C 43 29 72 049907 T 2 0 2 G 46 46 92 050021 T 15 27 42 A 33 19 52 050223 A 1 11 12 G 47 35 82 050452 G 1 0 1 A 45 46 91 051451 A 7 16 23 C 39 28 67 051545 A 1 11 12 G 45 33 78 051609 C 9 0 9 G 37 44 81 051712 T 1 11 12 G 39 33 72 051810 C 1 10 11 T 35 34 69 052014 A 0 2 2 G 46 44 90 052027 T 15 7 22 C 31 39 70 052169 C 1 10 11 G 47 34 81 052187 C 1 11 12 T 47 35 82 052261 A 1 11 12 T 47 35 82 052328 A 1 0 1 G 47 46 93 052370 C 7 7 14 T 41 39 80 052399 C 1 11 12 T 47 35 82 052400 A 12 10 22 G 36 36 72 052770 T 1 11 12 C 47 35 82 052990 G 6 16 22 C 38 24 62 053090 G 1 10 11 T 43 32 75 053140 C 1 0 1 T 43 40 83 053181 C 7 16 23 G 37 24 61 053192 C 1 10 11 A 43 30 73 053254 C 1 11 12 T 45 29 74 053278 T 2 0 2 C 44 40 84 053370 C 1 0 1 A 45 34 79 053532 + 1 11 12 - 45 31 76 053553 G 16 5 21 C 30 37 67 053585 T 14 25 39 C 32 17 49 053609 A 1 0 1 G 45 42 87 057062 A 1 12 13 G 45 28 73 057177 + 1 9 10 - 39 23 62 057188 C 0 2 2 G 46 24 70 057421 + 2 0 2 - 44 42 86 057423 G 1 12 13 A 45 30 75 057499 T 10 1 11 C 36 41 77 057527 T 1 0 1 G 45 42 87 057632 A 1 12 13 G 47 32 79 057634 T 0 1 1 G 48 43 91 058665 A 1 10 11 G 35 28 63 058672 C 1 10 11 T 35 28 63 058815 G 1 11 12 A 41 33 74 058905 T 19 18 37 C 27 28 55 058949 C 1 9 10 T 45 37 82 058959 G 1 9 10 T 45 37 82 059105 T 1 0 1 C 45 46 91 061642 C 6 4 10 A 40 40 80 061695 G 10 3 13 A 36 41 77 061956 G 1 0 1 A 47 42 89 062006 - 12 1 13 + 32 23 55 062353 A 2 19 21 T 44 17 61 062529 A 5 0 5 G 43 46 89 063745 T 1 3 4 A 47 41 88 066681 A 1 0 1 T 43 42 85 068206 C 1 12 13 T 47 34 81 068478 T 14 20 34 C 34 16 50 068497 A 10 20 30 C 28 12 40 068499 G 1 12 13 T 33 20 53 068600 T 14 1 15 G 34 45 79 068671 G 15 1 16 A 33 45 78 069200 + 1 0 1 - 45 44 89 069206 A 1 0 1 G 45 46 91 069383 - 3 0 3 + 43 46 89 069569 T 1 2 3 C 45 44 89 069788 C 1 0 1 T 47 40 87 069819 C 2 0 2 T 46 40 86 069861 C 3 0 3 T 45 40 85 070126 G 11 4 15 A 33 42 75 070352 G 12 4 16 A 36 42 78 070482 G 1 12 13 A 47 32 79 070559 - 3 0 3 + 45 42 87 070842 A 2 0 2 G 44 36 80 070849 G 4 0 4 A 44 38 82 071179 T 0 1 1 C 48 45 93 071368 T 3 0 3 C 39 44 83 071459 C 4 0 4 A 38 44 82 071483 A 4 0 4 G 38 44 82 071637 G 5 0 5 A 43 46 89 071683 G 14 1 15 A 34 45 79 071722 G 30 5 35 C 18 41 59 071789 G 3 0 3 C 45 46 91 071842 G 3 0 3 A 45 46 91 071983 C 3 0 3 T 45 44 89 072151 T 1 0 1 C 47 44 91 072179 T 5 0 5 C 43 44 87 072230 A 1 0 1 G 47 44 91 072281 G 4 5 9 A 32 27 59 072305 C 4 16 20 T 42 22 64 072608 A 2 0 2 T 46 44 90 072749 A 5 0 5 G 43 46 89 072896 C 12 1 13 T 34 45 79 072926 A 3 0 3 G 43 46 89 073283 C 1 0 1 T 39 44 83 073300 G 2 0 2 C 38 44 82 073348 A 4 0 4 G 36 44 80 073540 - 2 0 2 + 44 42 86 073749 G 3 0 3 C 39 42 81 073757 G 1 0 1 A 41 42 83 074069 T 1 0 1 A 47 38 85 074342 G 1 0 1 C 47 44 91 074437 C 2 0 2 T 46 44 90 074538 - 2 0 2 + 46 44 90 074547 C 0 1 1 T 44 43 87 074872 T 1 0 1 G 47 46 93 075026 T 0 1 1 C 48 45 93 075170 G 2 6 8 A 46 40 86 075421 A 2 0 2 G 40 42 82 075442 T 2 0 2 C 40 42 82 075522 T 9 3 12 C 33 39 72 075542 T 23 4 27 C 19 38 57 075564 C 9 3 12 G 33 39 72 075580 T 2 0 2 C 40 42 82 075759 C 3 1 4 T 45 43 88 075895 T 1 0 1 C 47 46 93 075917 - 3 0 3 + 45 32 77 076039 C 0 1 1 T 48 45 93 076318 G 3 0 3 A 45 44 89 076485 - 0 3 3 + 48 41 89 076509 - 13 24 37 + 31 16 47 076597 C 2 0 2 G 28 16 44 076747 C 5 0 5 G 39 30 69 087373 T 1 12 13 C 47 32 79 087696 G 17 4 21 C 27 38 65 087777 C 14 4 18 T 24 30 54 087791 - 8 5 13 + 40 39 79 087798 A 12 1 13 G 36 43 79 088328 T 1 0 1 C 47 46 93 088492 T 3 20 23 C 45 26 71 088495 T 11 17 28 C 37 29 66 088497 A 11 17 28 C 37 29 66 088664 G 1 0 1 A 47 46 93 088713 A 1 3 4 G 47 43 90 088717 C 0 1 1 T 48 45 93 088760 G 0 1 1 A 48 45 93 088836 T 3 0 3 A 45 46 91 088871 G 0 1 1 A 44 43 87 088888 A 3 12 15 G 39 34 73 088957 C 10 17 27 T 32 29 61 089351 G 1 2 3 A 31 30 61 089358 - 5 3 8 + 31 35 66 089486 T 1 2 3 A 37 38 75 092047 T 7 13 20 A 31 21 52 092098 C 1 0 1 T 47 42 89 092126 C 1 0 1 T 47 42 89 092277 T 1 11 12 C 47 31 78 092351 T 24 20 44 C 24 22 46 092416 G 3 11 14 C 45 33 78 092479 T 13 16 29 C 33 28 61 092651 A 21 23 44 G 27 21 48 092767 A 1 0 1 G 47 46 93 092874 A 3 13 16 T 45 33 78 092876 C 6 12 18 G 42 34 76 093339 T 2 0 2 A 46 46 92 093583 A 1 0 1 G 47 44 91 093981 A 14 17 31 G 34 29 63 094116 C 2 0 2 A 46 46 92 094322 T 23 19 42 C 25 27 52 094351 G 1 0 1 C 47 46 93 094499 + 9 14 23 - 39 32 71 095047 C 14 17 31 T 34 29 63 095106 T 2 0 2 A 46 46 92 095272 A 6 0 6 G 42 46 88 095311 A 3 11 14 C 45 35 80 095373 C 8 5 13 G 40 41 81 095736 A 1 0 1 G 47 46 93 095835 A 8 5 13 G 40 41 81 096277 T 0 1 1 C 44 43 87 096479 A 12 15 27 C 32 27 59 096929 G 4 6 10 A 30 24 54 096951 T 2 0 2 C 32 30 62 096981 G 4 6 10 A 30 24 54 096989 T 4 6 10 C 30 24 54 097094 A 4 7 11 G 30 25 55 097103 G 0 7 7 A 34 25 59 097131 T 4 7 11 C 30 25 55 097176 C 3 0 3 A 45 44 89 097213 A 14 16 30 G 34 28 62 097380 A 9 2 11 C 39 42 81 097447 G 14 16 30 A 34 28 62 097517 + 14 16 30 - 34 28 62 097676 T 1 0 1 C 47 44 91 097695 C 11 16 27 T 37 28 65 097726 G 1 11 12 A 47 33 80 097746 A 1 11 12 C 47 33 80 097787 G 3 0 3 T 45 44 89 097796 A 8 5 13 G 40 39 79 098052 G 10 16 26 C 32 28 60 098173 G 1 0 1 C 45 44 89 098379 G 3 0 3 T 43 30 73 098446 T 1 2 3 A 45 22 67 098560 - 1 12 13 + 47 32 79 098605 A 3 0 3 T 45 44 89 098773 C 1 0 1 T 47 46 93 098843 T 18 24 42 A 30 22 52 098929 G 11 17 28 T 37 29 66 099007 G 12 5 17 T 36 41 77 099086 G 1 12 13 A 45 34 79 099194 T 1 0 1 C 41 34 75 099418 C 16 17 33 T 32 29 61 099476 T 5 0 5 G 43 44 87 099554 C 5 0 5 A 43 44 87 100015 + 16 15 31 - 30 27 57 100055 + 16 15 31 - 30 27 57 100075 G 2 0 2 A 44 42 86 100083 - 1 0 1 + 47 42 89 100152 T 1 0 1 A 47 42 89 100166 C 11 15 26 T 37 27 64 103989 - 14 7 21 + 32 37 69 104667 C 9 7 16 T 39 37 76 104844 G 1 3 4 C 47 43 90 104892 - 1 0 1 + 47 46 93 104939 C 5 0 5 A 43 46 89 104994 T 1 0 1 C 47 46 93 105170 T 1 0 1 A 47 46 93 105262 T 1 0 1 C 47 46 93 105302 G 1 12 13 C 47 34 81 105759 + 3 11 14 - 45 35 80 109161 C 11 8 19 T 37 34 71 109177 A 8 4 12 G 40 38 78 109325 A 0 1 1 T 48 41 89 109433 G 8 4 12 A 40 38 78 109507 C 1 0 1 T 47 42 89 109643 C 3 11 14 T 45 31 76 110030 T 1 0 1 C 47 46 93 110115 C 1 0 1 T 47 46 93 110387 G 14 20 34 T 32 26 58 110397 C 0 11 11 A 44 35 79 110411 G 14 20 34 A 30 26 56 110619 G 3 11 14 A 45 33 78 110644 C 3 11 14 T 45 33 78 110843 G 14 18 32 T 34 26 60 111172 - 3 11 14 + 43 33 76 111235 - 1 0 1 + 47 44 91 111244 T 0 1 1 G 48 43 91 111294 C 4 0 4 T 44 44 88 111305 T 3 3 6 C 45 41 86 111411 A 2 11 13 G 44 35 79 111476 C 11 9 20 A 35 37 72 111551 G 1 0 1 A 45 46 91 111554 C 1 0 1 A 45 46 91 111578 G 1 0 1 A 47 46 93 111654 A 3 11 14 T 45 35 80 111655 T 3 11 14 A 45 35 80 112042 A 1 0 1 G 47 46 93 112369 A 1 11 12 G 47 35 82 112383 C 0 4 4 T 48 42 90 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 011993: ACTT 025831: T 031234: A 038940: ATATT 039709: ATTTTT 045128: T 046187: t 049198: CTTGTA 053532: CTCA 057177: TTGT 057421: A 062006: A 069200: A 069383: AATA 070559: tttg 073540: ttaag 074538: ccttt 075917: t 076485: a 076509: CTT 087791: a 089358: gtt 094499: A 097517: C 098560: at 100015: CCACAGT 100055: C 100083: AT 103989: t 104892: a 105759: A 111172: aaggttattat 111235: a