SFTPA2 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
GGAGCATTTA GCC
A
T
G
A
T
G
T
T
A
G
C
T
G
G
T
T
A
T
T
T
T
G
C
C
C
A
T
T
A
G
T
T
G
A
T
G
C
50 |
REPEAT
A
G
T
T
T
C
T
T
C
C
T
A
G
C
A
T
C
G
A
T
G
G
T
C
T
T
T
A
C
A
G
T
T
T
G
G
C
A
T
G
T
T
T
T
G
C
A
G
T
G
100
G
C
T
G
G
T
A
C
T
G
G
T
T
G
T
T
C
C
T
T
T
C
C
A
T
T
T
T
T
A
G
T
G
C
T
T
C
C
T
T
C
G
G
G
A
G
C
T
C
T
150
T
T
T
A
G
G
G
C
A
G
G
C
C
T
C
G
T
G
G
T
G
A
C
A
A
A
A
T
C
T
C
T
C
A
G
C
A
T
T
T
G
C
T
T
G
T
C
T
G
T
200
A
A
A
G
G
A
G
T
T
T
A
T
T
T
T
T
C
C
T
A
C
A
C
T
T
A
T
G
A
A
G
C
T
T
A
G
T
T
T
G
G
C
T
G
G
A
T
A
T
G
250 |
var(207):[C:0.13]
A
A
A
T
T
C
T
G
G
G
T
T
G
A
A
A
A
T
T
C
T
T
T
T
C
T
T
T
A
A
G
A
A
T
G
T
T
G
A
A
T
A
T
T
G
G
C
C
C
C
300
C
A
C
T
C
C
C
T
T
C
T
G
G
C
T
T
G
A
A
G
G
G
T
T
T
C
T
G
C
C
G
A
G
A
G
A
T
C
C
T
C
T
G
T
T
A
G
T
C
T
350
G
A
T
G
G
G
C
T
T
C
C
C
T
T
T
G
T
G
G
G
T
A
A
C
C
T
G
A
C
C
T
T
T
C
T
C
T
C
T
G
G
C
T
G
C
C
C
T
T
A
400
A
C
A
T
T
T
T
T
T
C
C
T
T
C
A
T
T
T
C
A
A
C
C
T
T
G
G
T
G
A
A
T
C
T
G
A
C
A
A
A
C
A
T
G
T
G
T
C
T
T
450
G
G
G
G
T
T
G
C
T
T
T
T
C
T
C
A
A
G
G
A
G
T
A
T
C
T
T
T
G
T
G
G
T
G
T
T
C
T
C
T
G
T
A
T
T
T
C
C
T
G
500 |
var(498):[T:0.06]
A
A
T
T
T
G
A
A
T
G
T
T
G
G
C
C
T
G
C
C
T
T
G
C
T
A
C
A
T
T
G
G
G
G
A
A
G
T
T
C
T
C
C
T
G
G
A
T
A
A
550
T
A
T
C
C
T
G
A
A
G
A
G
T
G
T
T
T
T
C
C
A
G
C
T
T
G
G
T
T
C
C
A
T
T
C
T
C
C
C
C
A
T
C
A
C
T
T
T
C
A
600 |
var(555):[A:0.09]
T
G
T
A
C
A
C
C
A
A
T
C
T
G
A
T
G
T
A
G
A
T
T
T
G
G
T
C
T
T
T
T
C
A
C
A
T
A
G
T
C
C
C
A
T
A
T
T
T
C
650
T
T
G
G
G
G
G
C
T
T
T
G
T
T
C
A
T
T
T
C
T
T
T
T
T
A
C
T
C
T
T
T
T
T
T
C
T
C
T
A
A
A
C
T
T
C
T
C
A
T
700
T
T
C
A
T
T
A
A
T
T
T
G
A
T
C
T
T
C
A
A
T
C
A
C
T
G
A
T
A
C
C
C
T
T
T
C
T
T
C
C
A
C
T
T
G
A
T
T
G
A
750
A
T
C
C
G
C
T
A
C
T
G
A
A
G
C
T
T
G
T
G
C
A
T
G
C
A
T
C
A
C
G
T
A
G
T
T
C
T
C
A
T
G
C
T
G
T
G
G
T
T
800 |
var(760):[G:0.07]
|
var(773):[C:0.17]
|
var(793):[T:0.01]
T
T
C
A
G
C
T
C
C
A
T
C
A
G
G
T
T
A
T
T
T
A
A
G
G
T
C
T
T
C
T
C
T
A
C
A
C
T
G
T
T
T
A
T
T
C
T
A
C
T
850
T
A
G
C
C
A
T
T
C
G
T
C
T
A
A
T
C
T
T
T
T
T
T
C
A
A
G
T
T
T
T
T
A
G
C
T
T
C
C
T
T
G
T
G
A
T
G
G
G
T
900 |
var(859):[T:0.07]
T
T
G
A
A
C
A
T
C
C
T
C
C
T
T
T
A
G
C
T
T
G
G
A
G
A
A
G
T
T
T
G
T
T
A
T
T
A
C
C
G
A
C
T
T
T
C
T
G
A
950
A
G
C
C
T
A
C
T
T
C
T
G
T
C
A
G
C
T
C
A
T
C
A
A
A
G
T
C
A
T
T
C
T
C
T
G
T
C
C
T
G
C
T
T
T
G
T
T
C
T
1000
G
T
T
G
C
T
G
G
T
G
A
G
G
A
G
C
T
G
C
A
A
T
C
C
T
T
T
G
G
A
G
A
A
G
A
A
G
G
G
G
C
A
C
T
C
T
G
G
T
T
1050
T
T
T
A
G
A
A
T
T
T
T
C
A
G
C
T
T
T
T
C
T
G
C
T
C
T
G
G
T
T
T
C
T
C
C
C
C
A
T
C
T
T
T
G
T
G
G
T
T
T
1100 |
var(1063):[T:0.06]
|
var(1088):[G:0.02]
T
A
T
C
T
A
C
C
T
T
T
G
G
C
C
T
T
T
G
A
T
G
A
T
G
G
T
G
A
C
C
T
A
C
A
T
A
T
G
G
G
A
T
T
T
T
G
G
T
G
1150
T
G
G
A
T
G
T
C
C
T
T
T
C
T
A
T
T
G
A
T
G
T
T
G
A
T
G
C
T
A
T
T
C
C
T
T
T
C
T
G
T
T
T
G
T
T
A
G
T
T
1200
T
T
C
T
T
T
C
T
A
A
C
A
G
T
C
A
G
G
T
C
C
C
T
C
A
G
C
T
G
C
A
G
G
T
C
T
G
T
T
G
G
A
G
T
T
T
G
C
T
G
1250
G
A
G
G
T
C
C
A
C
T
C
C
A
G
A
C
C
C
T
G
T
T
T
G
C
C
T
G
G
G
T
T
T
C
A
C
C
A
G
G
A
C
A
G
G
T
G
A
A
C
1300
A
G
C
A
A
A
T
A
T
T
G
C
A
G
A
A
C
A
G
C
A
A
A
T
A
T
T
G
C
T
G
C
C
T
G
A
T
C
C
T
T
C
C
T
C
T
G
G
A
A
1350
G
C
T
T
C
G
T
C
T
C
A
G
A
G
G
G
C
A
C
C
T
G
G
C
T
G
T
A
T
G
A
G
G
T
G
T
C
A
G
T
T
G
G
C
C
C
C
T
A
C
1400
T
G
G
G
A
G
G
T
G
T
C
T
C
C
A
A
G
T
T
A
G
G
C
T
A
T
G
T
G
G
G
G
G
T
C
A
G
G
G
A
C
C
C
A
C
T
T
G
A
G
1450
G
A
G
G
C
T
G
T
C
T
G
T
C
C
A
T
T
T
T
C
A
G
A
G
C
T
C
A
A
A
C
A
C
C
A
C
A
T
T
G
A
G
A
G
A
A
C
C
A
C
1500 |
var(1457):[C:0.06]
|
var(1487):[:0.05]
|
var(1489):[A:0.01]
T
G
C
T
C
C
T
T
C
A
G
A
G
C
T
G
T
C
A
G
A
C
A
G
G
G
A
T
G
T
T
T
A
A
G
T
C
T
G
C
A
G
A
G
G
T
T
T
C
T
1550
G
C
T
G
C
C
T
T
T
T
G
T
T
C
A
G
C
T
G
T
G
T
C
A
T
G
C
C
C
C
C
A
T
A
G
G
C
G
G
A
G
T
C
T
A
C
A
G
A
G
1600 |
var(1583):[G:0.48]
|
var(1587):[T:0.04]
G
T
A
G
G
C
T
G
T
T
G
A
G
C
T
G
C
A
G
T
G
G
G
C
T
C
C
A
C
C
C
A
G
T
T
C
G
A
G
C
T
T
C
C
T
G
G
C
T
G
1650 |
var(1637):[A:0.09]
C
T
T
T
G
T
T
T
A
C
C
T
A
C
T
C
A
A
G
T
C
T
C
A
G
C
A
A
T
T
G
T
A
G
A
C
G
C
C
C
C
T
C
C
C
C
C
A
G
C
1700
C
A
G
G
C
T
T
G
C
T
G
C
C
T
C
G
C
A
G
T
T
C
T
G
T
C
T
G
G
G
A
C
T
A
G
C
A
G
T
G
G
C
A
A
G
G
C
T
C
C
1750
A
T
G
G
G
C
A
T
G
G
G
A
C
C
C
A
C
T
G
A
G
C
C
A
T
G
T
G
C
G
G
G
A
T
A
T
A
A
T
C
T
C
C
T
G
G
T
G
T
G
1800 |
var(1775):[G:0.14]
C
C
A
T
T
T
G
A
T
A
A
G
A
C
C
A
T
T
G
G
A
A
A
A
G
C
A
C
A
G
T
G
T
T
T
A
G
G
T
G
G
C
A
G
T
T
T
C
C
C
1850 |
var(1816):[G:0.07]
G
A
T
T
T
T
C
C
C
A
G
T
A
C
A
A
T
C
T
G
T
C
A
C
A
G
C
T
T
C
C
C
T
T
G
G
C
T
A
G
G
A
A
A
G
G
G
A
A
A
1900
T
C
C
C
C
C
A
A
C
C
T
C
C
T
G
C
A
C
T
T
C
C
T
A
G
G
T
G
A
G
G
C
A
A
T
G
C
C
C
C
A
C
C
C
T
G
C
T
T
T
1950
G
G
C
T
C
A
C
C
G
T
C
C
A
T
G
G
G
C
T
G
C
A
C
C
C
A
C
T
T
T
C
T
G
A
C
C
A
G
T
C
C
C
A
G
T
G
A
G
A
T
2000
G
A
A
C
C
A
C
T
T
A
C
C
T
C
A
G
T
T
G
G
A
A
A
T
G
C
A
G
A
A
A
T
C
A
C
C
C
A
T
C
T
T
C
T
G
T
C
T
C
A
2050
A
T
C
A
C
G
C
T
G
G
G
A
G
C
T
G
C
A
G
A
C
C
A
G
A
G
C
T
G
T
T
C
C
T
A
T
T
C
A
G
C
C
A
T
C
T
T
G
G
A
2100 |
var(2099):[C:0.01]
ATCCCATCCA GAATATACTT TAATACTTTA ATATTTTAAC ATATGAAAAC
2150
CTCATAACCT GACAGCTTT
A
T
G
T
A
C
A
A
G
A
A
T
G
T
T
C
A
C
A
T
C
A
G
C
A
T
T
A
T
A
C
2200 |
REPEAT
A
T
A
C
T
A
A
A
T
T
G
A
A
A
C
T
G
A
A
A
A
A
A
T
C
A
C
T
G
T
C
T
G
T
C
A
A
C
A
C
C
A
T
A
G
T
A
A
A
G
2250
A
A
C
C
A
G
T
T
G
T
C
A
T
A
T
A
T
T
C
A
T
C
T
A
G
T
A
G
A
A
T
A
T
T
G
G
T
C
A
G
C
A
A
T
G
A
A
C
A
C
2300
A
C
T
A
T
T
G
C
C
A
T
G
T
G
C
A
A
C
A
A
C
A
T
A
G
A
T
C
A
A
T
C
T
C
A
C
A
C
A
T
A
C
A
A
T
G
G
C
G
A
2350 |
var(2339):[T:0.01]
T
C
C
A
A
A
G
T
A
G
C
C
A
G
A
C
C
C
C
A
A
A
A
T
T
C
C
C
T
A
G
T
G
T
A
T
A
A
G
T
A
T
G
T
C
C
T
T
T
A
2400 |
var(2396):[T:0.06]
T
A
T
A
A
A
T
T
T
C
A
A
G
A
A
C
A
G
G
G
A
A
C
C
T
A
A
T
C
A
A
T
G
G
C
A
A
C
A
G
A
G
G
T
T
A
G
A
A
T
2450
A
A
T
G
A
G
T
T
C
C
T
A
T
A
G
G
T
A
A
G
A
G
A
G
A
G
G
G
C
A
T
A
G
A
A
A
C
T
G
A
C
C
A
T
A
C
A
A
G
A
2500 |
var(2472):[C:0.02]
A
G
G
T
C
T
C
T
G
T
G
G
T
G
C
T
G
G
C
A
A
A
G
T
T
T
A
C
T
T
T
T
T
G
A
C
T
G
G
T
T
G
G
T
A
G
T
T
T
T
2550
A
T
A
G
G
T
T
T
T
A
A
T
T
T
G
T
A
A
C
A
A
C
T
C
A
C
T
G
A
A
A
T
G
T
A
A
A
C
T
T
A
T
C
T
G
T
T
A
T
C
2600
T
T
T
T
T
T
G
T
T
T
A
T
T
A
T
G
G
T
G
C
A
C
A
A
G
T
T
T
T
T
C
C
A
A
A
A
A
G
T
T
A
A
A
A
A
GATAG
2650
TGAAGAATAC ATTACCAAAA TTAAAAACAA GCAACCCCCA AGAAAAGAGT
2700
ATAGTTATAA TTAGGTCTAT ATGTGTTCAT CTGAAAAGAT GCCTGAGGGA
2750
TGTAAGGGAA ATCACTAATT GCAGAATTTG AATAGATGTC TGGATGTCTG
2800
AGGTATGTAA CACTAGTTGT AGAAGAGTAT CTGCAGTATG ATCTTTTTGG
2850
TGCAAAGTAA GAGAGAGAGA GAATTTCTGA GTCTATTTCT TTGGAGACAT
2900
TTGCTGCCAC CTGAGAATTT CAATTCCTCC AAGGTGGCAG AATGAGGAAA
2950
GCTGGCTGCC TCTCCTCAAA GCCTAAAGCA TAATGTTTTC CAGGAGTTTG
3000
G
A
T
A
G
A
T
T
C
A
A
T
C
C
A
A
A
A
A
C
G
T
T
T
T
C
A
C
T
G
A
A
G
C
T
C
A
T
G
G
T
A
A
A
T
A
A
A
C
T
3050 |
REPEAT
|
var(3039):[T:0.32]
G
T
C
A
A
A
A
G
T
C
A
A
A
G
A
T
A
G
T
C
A
A
A
G
C
A
G
T
A
A
G
A
A
A
A
A
T
G
T
G
C
T
A
A
G
T
C
A
A
A
3100
A
T
A
A
G
G
G
A
A
T
C
C
C
T
A
T
T
A
G
A
C
T
A
A
C
A
G
C
A
G
G
T
T
T
C
T
T
A
G
A
A
T
A
A
A
C
C
C
T
A
3150
G
A
A
G
T
C
A
G
G
A
G
A
G
A
A
T
A
A
G
A
T
A
A
T
T
T
T
C
A
A
A
G
T
G
T
T
G
G
A
A
A
A
A
A
A
A
C
T
G
T
3200
C
A
G
A
A
A
A
G
A
A
T
A
C
T
A
C
A
C
C
C
A
G
C
A
A
A
G
C
T
A
T
T
A
T
T
C
A
G
A
G
A
T
G
A
A
A
G
A
G
A
3250
A
A
T
A
A
A
G
A
C
T
T
T
C
C
C
A
G
G
C
A
A
A
C
A
A
A
A
C
T
A
G
A
G
A
A
A
A
T
T
C
A
T
C
A
C
T
A
C
T
A
3300
G
A
C
T
A
G
C
C
T
T
A
T
A
A
A
A
A
A
T
C
C
T
T
A
A
G
G
G
A
C
T
C
C
T
A
T
A
C
C
T
G
G
A
A
G
T
G
A
A
G
3350
G
A
A
A
A
A
T
A
A
C
T
A
C
C
T
T
T
G
T
G
A
A
A
A
C
A
T
G
T
G
A
A
A
G
T
A
T
A
A
A
A
C
T
C
A
T
T
G
G
T
3400
A
G
A
G
A
A
A
A
C
A
T
A
C
A
A
A
T
G
A
G
A
A
A
G
A
G
A
A
A
G
C
A
A
T
C
A
A
A
A
T
T
T
A
T
C
A
C
T
A
C
3450
A
G
A
A
A
A
C
C
A
A
C
A
A
A
C
T
A
C
G
A
A
G
A
T
A
A
A
C
A
A
T
A
A
G
A
G
A
G
G
A
A
G
T
A
A
C
A
A
A
G
3500
A
A
G
A
G
A
C
A
A
A
A
T
A
A
T
C
A
G
A
A
A
A
C
A
A
C
T
G
T
T
T
A
A
A
T
C
A
C
A
A
G
A
G
T
A
A
T
C
C
T
3550
C
A
C
T
T
A
T
C
A
A
C
A
A
T
A
A
C
C
T
T
G
A
A
T
G
T
A
A
A
C
A
G
A
C
T
A
A
A
T
T
A
C
T
C
A
A
T
T
A
A
3600
A
A
A
A
T
A
T
A
G
A
C
T
G
G
C
T
A
A
A
T
G
G
A
T
A
A
A
A
A
A
A
G
G
G
A
C
C
A
A
A
C
T
A
T
A
T
G
C
T
T
3650
C
T
T
A
T
A
A
G
A
A
A
C
T
T
A
C
A
T
G
A
C
T
T
G
T
A
A
A
A
A
C
A
T
G
C
A
T
A
G
A
C
T
G
A
A
T
G
T
A
A
3700
A
T
G
A
A
T
G
A
A
A
A
A
A
A
A
T
T
C
A
T
G
C
A
A
A
T
A
G
A
A
A
T
A
A
A
A
A
G
T
G
A
G
C
A
G
A
A
G
T
C
3750
A
C
T
A
T
A
C
T
T
A
T
T
T
C
A
G
A
T
A
A
A
A
T
G
T
A
C
T
T
T
A
A
A
T
C
A
A
A
A
G
C
T
G
T
G
A
G
A
A
A
3800
A
G
T
C
A
A
G
G
A
A
G
A
T
C
A
C
A
T
A
T
A
A
T
G
A
C
A
A
A
G
G
G
A
T
T
G
A
T
T
T
A
G
T
A
A
A
A
G
G
A
3850 |
var(3812):[G:0.16]
T
A
T
G
A
C
A
A
T
T
G
T
A
A
A
G
A
T
A
C
A
T
T
C
A
C
C
C
A
A
C
A
C
C
A
G
A
A
A
A
C
C
A
A
A
C
T
A
T
A
3900
G
A
A
A
T
C
A
A
A
T
A
T
T
A
T
T
A
G
A
G
C
T
A
A
A
G
G
G
A
G
A
G
G
C
A
G
A
C
T
C
C
A
A
T
A
C
A
A
T
A
3950
A
T
T
G
T
T
G
G
G
G
A
C
T
T
C
A
A
C
A
G
T
T
C
A
C
T
C
T
C
A
G
T
A
T
T
G
A
T
A
G
A
T
C
G
C
T
T
A
G
A
4000
C
A
C
A
A
A
A
T
C
A
A
C
A
A
A
G
A
A
A
C
A
C
T
G
G
A
T
T
T
A
A
T
C
T
G
T
G
C
T
C
C
A
G
A
A
C
A
A
A
T
4050
G
G
A
C
C
T
A
A
C
A
G
A
C
A
C
T
T
G
A
A
G
A
A
C
A
T
T
T
C
A
T
C
T
G
A
C
A
G
T
T
A
C
A
G
A
A
T
A
C
T
4100
C
A
T
T
C
T
T
T
T
C
A
T
C
A
G
C
A
C
A
T
A
G
A
A
C
A
T
T
C
T
C
C
A
G
G
A
T
A
G
A
C
C
A
T
A
T
A
T
T
A
4150
G
G
C
C
A
C
A
A
A
G
C
A
A
G
T
C
T
C
A
A
T
G
A
A
T
T
T
T
A
A
A
A
C
A
T
C
A
C
A
A
T
C
A
T
T
T
C
A
A
T
4200
T
A
C
C
T
T
T
T
A
T
G
A
A
C
A
C
A
A
T
G
G
A
A
T
A
A
A
A
C
A
A
G
A
A
A
G
C
A
A
T
A
A
C
A
A
G
A
G
G
A
4250
A
C
T
T
T
G
G
A
A
A
C
T
G
A
A
C
A
A
A
T
A
C
A
T
A
G
A
A
A
T
T
A
A
A
C
A
A
T
A
T
G
C
T
T
C
T
G
A
A
A
4300
G
A
C
C
A
A
T
G
G
G
T
G
A
A
T
A
A
A
C
A
A
A
T
T
A
A
G
A
C
G
G
A
A
A
T
T
A
A
A
A
A
T
T
T
C
C
T
T
G
A
4350
A
A
G
A
A
A
C
A
A
A
A
A
T
A
C
A
A
A
C
A
C
A
A
C
A
T
A
T
C
A
A
A
A
C
C
T
A
A
G
A
G
G
G
A
A
A
T
T
T
A
4400
T
A
G
C
G
T
T
G
C
A
T
G
C
C
T
A
C
A
T
C
A
A
A
A
A
A
G
T
A
G
A
T
G
A
T
T
T
C
C
A
A
A
A
A
A
T
A
A
A
A
4450 |
var(4434):[G:0.01]
|
var(4439):[A:0.47]
C
A
A
T
A
A
T
G
C
A
C
C
T
T
A
A
A
G
A
A
C
T
A
G
A
A
A
A
G
C
A
A
G
A
A
A
A
A
G
A
G
C
C
A
A
A
C
T
C
A
4500
A
A
A
T
T
A
G
T
A
G
A
A
A
G
A
A
A
C
T
T
G
A
A
A
A
A
T
C
A
G
A
G
C
A
G
A
A
A
T
A
A
A
C
A
A
C
A
A
A
C
4550
A
G
A
C
T
A
G
A
G
A
T
C
A
A
T
A
A
A
A
T
G
A
A
A
A
G
T
T
G
G
GGAGG
T
T
T
T
T
G
T
T
T
G
T
T
T
G
T
4600 |
REPEAT
|
var(4588):[:0.02]
T
T
G
T
T
T
T
T
G
T
A
T
T
T
T
T
C
T
G
G
G
G
T
G
A
G
C
A
T
C
T
T
A
C
T
C
T
G
T
C
A
C
C
C
A
G
G
A
T
G
4650
A
A
G
T
G
C
A
G
T
G
C
C
T
C
T
G
T
C
A
T
G
G
C
T
C
A
C
T
G
C
A
G
C
C
T
C
C
A
G
C
T
C
A
T
G
A
G
C
G
C
4700 |
var(4698):[T:0.08]
C
A
G
A
G
A
C
C
T
T
C
A
T
T
C
T
T
C
T
G
A
G
C
A
G
C
T
G
G
G
A
A
T
A
C
A
G
G
C
A
T
G
T
G
C
C
A
C
C
A
4750
C
A
C
C
C
A
G
C
T
A
A
G
A
T
T
T
T
T
T
T
T
C
T
T
C
T
T
T
T
T
T
A
A
A
A
G
A
T
G
T
A
G
T
A
T
T
T
T
T
T
4800 |
var(4794):[T:0.01]
T
T
A
T
T
G
C
C
C
A
G
G
A
T
G
G
T
C
T
C
A
A
A
C
T
C
C
T
G
G
C
C
T
C
A
A
G
T
G
A
T
C
C
T
C
C
T
G
C
C
4850
T
T
G
G
C
C
T
C
A
G
T
G
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
T
G
A
G
C
C
A
C
TA
T
AC TGAGCTGAAA
4900 |
var(4888):[C:0.17]
C
G
T
T
G
G
T
A
T
T
T
T
G
A
A
C
A
G
A
T
A
A
A
C
A
A
A
A
T
T
G
A
C
A
A
A
C
C
A
T
T
A
G
G
T
A
G
A
C
T
4950 |
var(4901):[T:0.01]
|
REPEAT
A
A
C
T
A
A
A
A
A
A
A
T
A
A
G
A
G
A
G
A
A
G
A
C
T
G
A
G
A
T
A
A
G
T
A
A
A
A
A
T
G
A
G
A
A
A
C
A
A
A
5000 |
var(4988):[T:0.09]
A
A
A
G
G
A
G
A
C
T
T
A
C
A
A
T
T
G
A
T
A
C
C
A
C
A
G
A
A
A
T
A
C
A
A
A
C
G
A
T
C
A
T
T
A
A
A
C
A
T
5050
T
A
T
T
A
T
A
A
A
C
A
A
C
T
T
A
T
G
T
C
A
A
C
A
A
A
T
G
A
G
A
A
A
A
T
C
T
A
G
G
G
A
A
A
A
T
G
G
A
T
5100
G
A
A
T
T
C
C
T
G
G
A
C
A
C
A
T
A
C
A
A
C
C
T
A
C
C
A
A
G
A
C
T
G
A
A
C
C
A
G
G
A
A
G
A
A
A
T
A
G
A
5150 |
var(5147):[C:0.01]
A
A
A
C
C
C
G
A
A
C
A
T
A
C
C
A
A
T
T
A
C
T
A
G
T
A
A
C
A
A
T
A
T
T
G
A
A
T
C
A
A
T
A
A
T
A
A
A
A
C
5200 |
var(5160):[T:0.09]
G
T
C
T
A
C
C
A
T
C
A
A
A
G
A
A
A
A
G
T
C
C
A
T
G
A
C
T
A
G
A
T
G
C
C
T
T
C
A
C
T
G
C
T
G
A
A
T
T
C
5250
T
G
C
C
A
A
A
G
T
T
T
T
A
A
A
G
A
A
C
A
A
A
A
A
A
C
A
C
C
A
A
T
T
C
T
T
T
T
C
A
A
G
C
T
A
T
T
C
C
A
5300
A
A
A
A
A
T
T
G
A
A
G
A
G
G
A
G
G
A
A
A
T
T
C
T
T
C
C
A
A
T
C
T
C
A
T
T
T
T
A
T
G
G
G
G
C
C
A
G
C
A
5350
T
T
A
T
C
C
T
G
A
T
A
T
C
C
T
G
A
C
A
G
C
A
A
A
A
C
C
A
G
A
C
A
T
A
A
A
C
A
C
A
A
C
A
A
C
A
A
C
A
A
5400
G
A
A
C
A
G
T
A
C
A
A
G
C
T
A
A
T
A
T
C
T
C
T
G
A
T
G
A
A
C
A
G
A
G
A
T
A
C
A
A
A
A
A
T
C
C
T
C
A
A
5450 |
var(5428):[G:0.05]
C
A
A
A
A
T
A
C
T
A
G
C
A
A
A
C
A
G
A
A
T
C
C
A
G
C
A
G
C
A
C
A
T
C
C
A
A
A
A
T
A
C
A
A
T
C
A
T
C
A
5500
T
C
A
A
G
T
G
G
G
A
T
T
C
A
T
C
T
C
A
G
G
G
A
T
G
C
A
A
G
G
A
T
G
G
T
T
C
A
A
C
A
T
A
T
A
T
A
A
A
T
5550
C
A
A
T
A
A
G
T
G
T
G
A
T
A
C
A
T
T
A
C
A
T
C
A
A
C
G
G
A
A
T
G
A
A
G
A
A
G
A
A
A
A
C
A
T
A
T
G
A
T
5600 |
var(5576):[T:0.02]
|
var(5578):[A:0.09]
C
A
T
C
T
C
A
A
T
A
G
A
T
G
C
A
G
A
A
A
A
A
A
T
A
T
T
T
G
A
C
A
A
A
A
T
T
T
A
A
C
A
T
C
C
C
T
T
C
A
5650
T
C
A
T
A
A
A
A
A
C
C
C
T
C
A
A
C
A
A
A
T
T
A
G
G
T
G
T
A
T
A
A
A
C
C
A
A
G
T
A
C
C
T
C
A
A
C
A
C
A
5700
A
T
A
A
A
G
G
C
C
A
T
A
T
A
C
A
A
A
A
A
A
A
T
C
G
A
C
A
G
C
T
A
C
C
A
T
C
A
T
A
C
T
G
A
A
T
G
G
A
G
5750
A
A
A
A
T
T
T
G
A
A
A
G
T
T
T
T
C
C
G
C
T
A
A
T
A
A
T
T
T
G
A
G
C
A
A
G
A
C
A
A
G
G
T
T
G
C
C
C
A
C
5800
T
T
T
C
A
C
T
A
C
T
C
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
T
G
A
G
A
C
A
G
A
G
T
C
T
5850 |
REPEAT
T
G
C
T
C
T
G
T
T
A
C
C
C
A
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
T
G
C
A
G
T
G
G
C
G
T
G
A
T
C
T
T
G
G
C
5900 |
var(5873):[G:0.15]
|
var(5883):[T:0.10]
T
C
A
C
T
G
C
A
A
C
C
T
C
C
G
C
C
T
C
C
C
A
T
G
T
T
C
A
A
G
T
G
A
T
T
C
T
C
C
T
G
C
C
T
C
A
G
C
C
T
5950 |
var(5914):[T:0.14]
C
C
C
A
A
G
T
A
C
T
G
G
G
A
T
T
A
C
A
G
G
C
A
C
C
C
A
C
C
A
C
C
A
T
G
C
C
T
G
G
C
T
A
A
T
T
T
T
T
T
6000
T
G
T
A
T
T
T
T
T
A
G
T
A
G
A
G
A
C
G
G
G
G
T
T
T
C
A
C
C
A
T
G
T
T
G
G
C
C
A
A
G
C
T
G
G
T
C
T
C
C
6050
A
A
C
T
C
C
T
G
A
C
C
T
C
A
G
G
T
G
A
T
C
T
T
C
C
C
A
C
C
T
T
G
G
C
C
T
C
C
C
A
A
A
G
T
C
C
T
G
G
G
6100
A
T
T
A
C
A
G
G
C
G
T
G
A
G
C
C
A
C
T
G
C
G
C
C
C
A
G
C
C
C
A
C
T
A
C
T
C
T
T
A
T
T
C
A
A
G
A
T
A
G
6150 |
REPEAT
T
T
A
A
G
G
A
A
G
T
C
C
T
A
G
C
C
A
G
A
G
T
A
A
T
T
A
A
T
C
A
T
G
G
G
A
A
A
A
A
A
A
T
A
A
A
G
C
G
T
6200 |
var(6198):[G:0.10]
|
var(6199):[A:0.01]
A
T
C
C
A
A
A
T
A
G
G
A
A
A
G
G
A
A
G
A
A
A
T
C
A
A
A
T
T
G
T
C
C
C
T
A
T
T
T
G
C
A
G
A
C
A
A
C
A
T
6250
G
A
T
C
T
T
A
A
A
A
A
G
A
C
A
A
A
A
T
C
C
T
A
A
A
G
A
C
T
T
C
A
C
A
A
A
A
A
C
A
C
T
C
T
T
A
G
A
A
C
6300
T
G
A
T
A
A
A
T
G
A
A
T
C
C
A
G
T
A
A
A
G
T
T
G
C
A
G
G
A
T
A
C
A
A
A
A
T
C
A
A
C
A
T
A
C
A
A
A
A
A
6350 |
var(6333):[C:0.02]
T
C
A
A
C
A
G
C
A
T
T
T
G
T
A
T
A
C
A
T
C
A
A
G
A
A
G
A
A
C
T
A
C
A
T
G
A
G
A
A
A
G
A
A
A
T
C
A
A
G
6400
A
A
G
T
C
A
A
T
C
C
C
G
T
T
T
A
C
A
A
T
G
G
C
T
A
C
A
A
A
G
T
A
T
A
A
A
A
T
A
C
C
T
A
G
G
A
A
T
A
A
6450
A
T
G
T
A
A
C
C
A
G
G
G
A
G
T
G
A
A
A
G
A
T
C
T
C
T
A
C
T
A
T
G
A
A
A
G
C
T
A
T
A
A
A
A
C
A
C
T
G
A
6500
A
G
A
A
A
A
A
A
C
T
G
A
A
G
A
G
G
A
T
A
C
A
A
A
A
A
A
G
T
G
A
A
A
A
G
A
C
A
T
C
T
C
A
T
G
T
T
C
A
T
6550 |
var(6527):[C:0.05]
|
var(6531):[:0.06]
G
G
A
T
T
G
G
A
A
G
A
A
T
C
A
G
T
A
T
T
G
T
T
A
A
A
A
T
A
A
C
C
A
T
A
C
T
A
C
C
C
A
A
A
G
T
G
A
T
C
6600
T
A
C
A
G
A
T
T
T
A
A
T
G
C
C
A
T
G
C
C
T
A
T
T
A
A
A
A
T
A
A
T
A
A
T
G
A
C
A
T
T
C
T
T
C
A
C
A
A
A
6650
A
T
G
A
G
A
A
T
G
A
A
C
A
A
T
C
A
T
A
A
A
A
T
T
T
G
T
A
T
G
G
A
A
C
C
A
T
A
A
A
A
A
G
A
C
A
C
C
A
A
6700 |
var(6654):[G:0.06]
A
T
A
G
T
C
A
A
G
G
C
A
A
C
C
C
T
A
A
G
C
A
A
A
A
A
G
T
G
A
A
A
A
G
C
T
G
G
A
G
G
C
A
T
C
A
C
A
C
T
6750
A
C
C
T
G
A
C
T
T
C
A
A
C
A
T
G
T
A
C
T
A
C
A
A
A
T
C
T
A
T
G
A
T
A
A
C
C
A
A
A
A
C
A
G
C
A
T
G
G
T
6800
G
C
T
G
T
T
A
T
A
A
A
C
A
C
A
T
A
G
A
G
C
A
A
T
G
G
A
A
C
A
C
A
A
T
A
G
A
G
A
A
C
A
C
A
G
A
A
A
T
A
6850 |
var(6813):[C:0.01]
A
A
T
T
C
G
C
A
T
A
T
T
T
A
T
A
G
T
C
A
A
C
T
G
A
T
T
T
T
T
G
A
C
A
A
A
G
G
C
A
T
C
A
A
G
A
A
C
A
T
6900
A
C
G
T
T
G
G
G
G
G
A
A
A
G
A
A
C
A
G
T
C
T
G
T
T
C
A
A
T
A
A
A
T
G
A
T
G
C
T
G
G
G
G
A
A
A
C
T
G
G
6950
A
T
A
T
T
C
A
T
A
T
G
C
A
G
A
A
G
A
A
T
G
C
A
A
C
T
G
G
A
C
T
C
C
T
A
T
C
T
C
T
C
A
C
A
C
A
T
A
C
A
7000
A
A
A
A
A
T
C
A
A
C
A
C
A
A
A
A
T
G
G
A
C
T
A
A
A
G
A
C
T
T
A
A
A
T
G
T
A
A
G
T
C
C
C
G
A
A
A
C
T
A
7050 |
var(7044):[A:0.16]
T
G
A
A
A
C
T
A
C
T
A
G
A
A
A
T
A
A
A
C
A
C
A
G
G
A
G
A
A
G
T
G
C
C
T
C
A
G
G
A
C
A
C
C
G
G
T
T
T
G
7100
G
G
T
G
A
A
G
A
T
T
T
T
A
T
G
A
A
A
G
A
C
C
T
C
A
A
A
A
G
C
A
C
A
G
G
C
A
A
C
A
A
A
A
G
C
G
A
A
A
A
7150
T
A
A
A
C
A
A
A
T
G
G
G
A
T
T
A
T
A
T
C
A
A
A
C
T
A
A
A
A
A
G
C
A
T
C
T
G
C
A
G
A
G
A
A
A
A
C
A
A
T
7200
C
A
G
C
A
G
T
G
T
G
A
A
G
A
G
A
A
A
A
C
C
T
G
C
A
G
A
A
T
T
G
G
A
G
A
A
A
A
T
A
T
T
T
G
C
A
A
C
T
A
7250 |
var(7244):[A:0.01]
T
T
A
A
T
C
C
A
A
T
A
A
G
G
A
A
T
T
A
A
T
A
T
C
C
T
G
T
A
T
A
C
A
C
A
A
G
G
A
A
C
T
C
A
A
A
C
A
A
G
7300 |
var(7276):[C:0.07]
T
C
T
A
C
A
G
C
A
A
A
A
A
A
A
T
C
C
A
A
A
T
A
A
T
A
C
A
A
T
T
T
T
A
A
A
A
T
G
G
G
C
A
A
A
T
G
A
T
C
7350
T
G
A
A
C
A
G
A
C
A
C
G
T
C
T
T
G
A
A
A
G
A
A
G
A
C
A
T
A
T
A
A
A
T
T
G
C
C
A
A
C
A
A
G
T
A
T
A
T
T
7400
A
A
A
A
A
T
G
C
T
T
G
G
C
C
A
G
G
C
C
C
G
G
T
G
G
C
T
C
T
T
G
C
C
T
G
T
A
A
T
C
C
C
A
G
T
A
A
T
T
T
7450 |
var(7401):[G:0.02]
|
REPEAT
|
var(7420):[T:0.02]
|
var(7421):[A:0.01]
G
G
G
A
G
G
C
T
G
A
A
G
T
G
G
G
A
A
G
T
T
G
G
C
T
T
G
A
G
C
C
C
A
G
G
A
G
T
T
T
G
A
G
A
C
C
A
G
C
C
7500 |
var(7479):[A:0.07]
T
G
G
G
A
A
A
C
A
T
A
G
T
G
A
G
A
T
T
T
C
A
T
G
C
T
T
A
C
A
A
A
A
A
T
A
A
A
A
A
A
T
T
A
T
C
C
G
G
G
7550
C
A
T
G
G
T
G
G
T
C
T
A
T
G
C
C
T
A
T
A
G
T
G
T
C
A
G
C
T
A
C
T
C
A
G
G
A
G
G
C
T
G
A
G
T
T
G
G
G
A
7600 |
var(7595):[C:0.01]
G
G
A
T
T
G
C
T
T
G
A
G
T
C
C
A
G
G
A
G
G
T
G
A
A
G
G
C
T
G
C
A
G
T
G
A
G
C
T
G
A
G
A
T
T
G
T
G
T
C
7650 |
var(7644):[C:0.01]
A
C
T
G
C
G
C
T
C
T
G
T
C
C
T
G
G
G
T
G
A
C
A
G
A
G
C
A
A
G
A
C
C
C
T
G
T
C
T
A
A
A
A
T
A
A
A
A
T
A
7700 |
REPEAT
A
T
A
G
A
T
A
T
A
A
T
A
T
A
A
A
A
A
T
A
A
G
A
A
T
T
C
T
C
A
A
T
A
C
T
A
C
T
A
C
T
C
C
T
A
A
G
G
A
A
7750
A
A
T
G
T
C
A
A
T
C
A
A
A
C
C
A
C
A
A
T
G
A
G
A
T
A
T
C
T
C
A
C
C
C
C
A
G
G
T
A
G
A
C
T
G
G
C
T
C
T
7800
T
A
T
T
A
A
T
A
A
G
A
C
A
A
T
A
A
C
T
A
A
T
A
A
A
T
A
C
T
G
G
C
A
A
G
G
A
T
G
C
A
G
A
G
A
A
A
A
G
T
7850 |
var(7829):[C:0.07]
G
A
A
C
T
C
T
T
A
T
A
C
A
C
T
G
T
T
G
G
T
G
G
A
A
A
T
G
T
A
A
A
G
C
A
G
T
A
C
A
G
T
T
A
T
T
A
T
G
G
7900
A
A
A
A
C
A
G
A
G
G
G
G
A
G
A
T
T
C
C
T
C
C
A
A
A
A
A
A
C
A
A
A
A
A
A
T
A
G
A
A
C
G
A
C
C
A
T
A
T
G
7950
A
T
C
T
A
A
C
A
A
T
T
C
C
A
C
T
A
C
T
C
A
G
T
A
T
T
C
A
T
A
G
G
A
A
T
A
T
A
T
T
C
A
A
A
G
G
A
A
A
G
8000
G
A
A
C
T
C
A
G
T
A
T
G
T
T
G
A
A
G
A
A
G
T
A
T
C
T
G
C
A
C
T
C
C
C
A
T
G
T
T
T
A
T
T
G
T
A
G
T
A
C
8050
T
A
T
T
C
A
C
A
A
T
A
G
C
C
A
A
A
T
G
T
G
G
A
A
T
C
A
A
A
T
T
A
A
G
T
G
T
C
T
A
C
C
A
A
T
G
G
A
T
G
8100 |
var(8051):[C:0.02]
|
var(8072):[A:0.07]
G
A
T
G
G
A
T
A
A
A
G
A
A
A
A
T
G
C
G
A
T
A
A
C
T
A
T
A
C
A
C
C
A
T
G
A
A
A
T
A
C
T
G
T
C
C
G
G
C
C
8150
C
T
A
A
G
A
A
A
G
A
A
T
G
A
A
A
T
C
C
T
G
T
C
A
T
T
C
A
T
G
G
C
A
A
C
A
T
G
G
A
T
G
A
G
C
C
A
T
T
A
8200
T
G
T
T
A
A
A
T
G
A
A
A
T
A
A
A
G
C
C
A
G
G
A
A
G
A
G
A
A
A
G
T
T
A
A
A
C
A
C
A
G
C
A
T
C
T
T
C
T
C
8250
A
C
A
C
A
T
A
T
G
T
G
G
A
A
G
C
T
A
A
A
A
A
T
A
A
A
G
T
T
A
A
T
C
T
C
A
C
A
G
A
C
G
T
A
A
A
C
A
G
T
8300
A
G
A
A
C
A
G
A
G
C
A
T
A
C
T
A
G
A
G
G
C
T
G
G
G
A
A
A
A
C
C
A
G
G
A
G
A
A
T
G
A
A
G
G
A
T
G
G
G
G
8350 |
var(8348):[A:0.34]
A
G
A
G
C
T
T
G
G
T
C
A
A
T
G
G
A
C
A
A
A
A
G
A
T
C
A
T
A
G
C
T
A
G
A
C
A
A
G
A
G
C
A
A
T
G
A
G
T
T
8400 |
var(8368):[T:0.13]
C
T
A
G
C
C
T
T
C
T
A
G
A
G
C
A
C
T
G
G
A
G
G
G
T
G
A
C
C
A
T
A
G
T
G
A
A
C
A
A
T
A
A
C
T
C
A
T
T
A
8450
T
A
T
A
C
A
T
T
C
A
A
A
G
A
G
G
T
A
A
A
A
G
A
G
A
A
G
A
C
T
G
T
G
A
A
T
G
T
T
C
T
T
A
T
C
A
C
T
A
A
8500
A
T
A
T
T
G
A
T
A
C
A
C
T
T
T
T
G
G
G
G
T
G
A
T
G
G
G
T
A
T
A
C
A
A
C
T
T
A
C
C
C
T
G
A
T
T
T
G
A
T
8550
C
A
T
T
G
A
T
T
A
T
T
G
C
A
T
A
C
A
T
G
T
A
T
C
A
A
A
A
T
A
G
C
T
C
A
C
T
A
T
A
T
C
C
C
A
T
G
T
A
T
8600 |
var(8588):[G:0.02]
A
T
A
T
A
A
A
A
T
T
A
T
G
T
G
T
C
C
A
T
T
A
A
A
A
A
T
A
A
G
A
AATTTTTTA AAATTAAAAA
8650
GAGTAAAGAA TAAGTCACCC AAATTAAAAA CAAGCAAACC CCAAGAAAAG
8700
ACTATAGTTA ACAATTATAT CCCTGTGTGT CAATCTGAAA ATATGGCTGG
8750
GGTATGTAAG AGAAAACACT TATTGTAGAA GAGTATCTGC AGTATGGTCT
8800
TATTGATGCA AAGTCAGTGT GTGTGTGTGC GTGTGTGTGT GTGTGTGTGT
8850
ATGTGCA
C
GT GTGTTTTCCT GAGCCT
G
TTT CATTGGAGAT AGTTGCTGCC
8900 |
var(8858):[G:0.01]
|
var(8877):[A:0.46]
ATCTGCCAGT TTCAATTCCT CCAAGGCGCA GAATGGGAAA AACTGTCTCC
8950
CTCACCTCAA AGCCTTAATA AAACATGA
C
G TGTTTCTCTG GGGTTTGGAA
9000 |
var(8979):[T:0.02]
GACTCAAAAT GCTCAGGGTA GTGAGGTGAG AGGGCTGTGT TGATGAAAAT
9050
TAAAATTTGT CATTTCTAGG TCATAGAAAG ATTTATTGTG TTATGCTTTT
9100
TAAGAATGCA GTGACATTTA TTAGATGTGC CAATGTAATA TAGATATGTG
9150
TGTAAATATA CAGCACACAA TATATGTGTG TACATATATT TATAATACAT
9200
ACACACATAA TTGCTTAGTA TGCTGGCTGC ATCAAGGAAA AGAAGCGTCA
9250
ACTTCCATTC CCTTAATGTG GCTGAGCTGC CCCTTAGATT CTGACAGTAG
9300
AAGTGATCTT GAAATATATC CATA
A
TTAGT AAATCTATTT ATGCATCTCT
9350 |
var(9325):[G:0.02]
TTG
T
CTCCAG GTACAGGTAG ATTAAGCACA TCCCTCTGAC TCTGGGAAGG
9400 |
var(9354):[C:0.09]
TTCTAGCAGA GGACTGAGCT GGAAAGAGGA TTT
C
T
G
G
G
T
A
A
T
T
T
T
G
G
C
A
A
9450 |
REPEAT
T
C
C
A
T
G
T
A
A
C
C
C
C
T
G
T
C
A
G
C
C
T
C
A
G
T
T
G
A
C
T
G
A
A
G
T
A
T
G
G
A
A
T
G
G
G
G
A
T
T
9500
T
A
C
T
T
A
C
T
C
T
C
T
G
T
A
C
G
C
C
T
C
A
T
A
G
A
G
T
G
C
T
G
C
A
A
T
G
A
T
C CAAAACGACG
9550 |
var(9516):[T:0.06]
|
var(9525):[C:0.02]
|
var(9534):[G:0.15]
GGAAAGCTCT AGCAGCCACA GACAGCCTCT TCCCACTGCT AGCACCCAGT
9600
GCAGCTGGAG AAAGGGGAAG GAAAGAGTCC CTTGAGCACT GAGAGAGAGG
9650
TCTCGAATCT GCAGAGACCC CC
G
TGGGCTG T
T
CTTA
G
GGC GGTGCATGGC
9700 |
var(9673):[A:0.09]
|
var(9682):[C:0.09]
|
var(9687):[A:0.03]
TCCCACTCTG TGCCCCTTCA GTCTTAAAAA GCGTCGTCTT CCTGGTTTCA
9750
GTCACACTGG GTGAGGAGGG GGTCCTGCCA CAGGGAGTGG GACTCGGAGT
9800
GCAGTGAGAC TGTGGACTCT GAGGTGGCTT CGCGTGGGCA CCCAGGGCCT
9850
GGCAGTGTGA AGAGGATGTC CCCGCAGAGG GAGGTGGCCC AGCATGGGGG
9900
TTGAAGCCCC TAGGAGAGTG AGAAGGGCAC TGAAGGAGAG CGGACCGGCC
9950
AGGGCAATGG GGCCTGAGCA A
G
GGGGAGGA GGCTGTGGAC GCGGCAGAGT
10000 |
var(9972):[T:0.05]
GGCCTGGCTT GGACACTCGG AACTCAGCAG GGACTGCAGC AATTCTTAGT
10050
GCTAAGAATG ACAAGCTTGT GTTTCTTAAC TACATTCTTT AGATTTG
C
TG
10100 |
var(10098):[T:0.02]
GTGCCATGTG CTGGTAAACT GTACCTGTCT CAACATCAAA CTCGGATAGT
10150
GTCCCTTGCA GCACGCAGGC GAGTGCATGG TTCCCCCTGG CGGTCGGTGG
10200
CAAGCCTCAC TCACGAGTCC ACATTGCTAC AAATCAATCA AAGGGCAACA
10250
AAGAGCG
T
G
A
T
G
A
G
G
G
A
T
G
G
G
A
T
C
T
T
T
A
C
A
A
T
A
G
T
C
C
C
A
A
A
G
T
G
C
G
T
C
C
C
10300 |
REPEAT
C
A
C
A
A
C
A
T
A
G
T
C
A
C
T
G
A
T
T
A
A
A
A
T
C
A
G
A
A
A
A
A
G
A
A
T
A
A
A
T
T
T
G
C
A
G
T
G
G
C
10350
A
A
A
T
T
G
T
G
A
C
A
C
C
C
A
C
C
A
C
C
T
T
A
A
T
T
A
A
A
T
G
A
T
C
A
A
C
A
C
G
A
A
C
A
T
C
A
T
C
A
10400
G
T
C
T
T
G
G
G
G
C
A
A
A
C
T
A
A
A
G
T
C
A
C
A
T
G
C
T
G
C
C
G
G
G
T
A
G
A
A
T
G
G
G
A
G
A
A
G
A
G
10450
C
G
C
A
G
C
C
G
G
G
T
G
T
C
G
A
T
G
G
T
A
T
T
T
C
T
G
C
C
G
A
A
G
T
T
A
C
A
G
A
A
C
C
T
G
A
A
T
C
T
10500
A
A
C
T
G
T
A
A
G
G
C
A
A
T
A
C
A
A
A
C AAACAAACAA ACAAACAAA
G
T
G
A
G
G
G
G
T
A
T
10550 |
var(10516):[:0.91]
|
REPEAT
T
T
T
A
C
A
C
A
G
T
A
A
C
T
C
C
C
C
T
G
T
G
A
T
C
T
T
C
A
C
A
C
T
G
T
G
T
T
C
A
G
G
T
C
A
T
G
A
A
G
10600
G
T
G
A
A
G
G
G
A
A
G
A
C
A
G
A
G
G
G
A
C
T
T
T
G
T
G
G
G
T
T
T
C
A
G
G
A
C
C
C
T
G
G
A
G
A
A
G
C
G
10650
T
G
A
C
A
A
C
C
G
A
A
T
A
A
G
G
C
A
C
A
T
G
G
C
T
C
A
G
A
A
A
C
G
G
A
T
C
C
T
T
T
G
C
T
A
T
A
A
A
G
10700
G
A
C
A
C
T
A
T
T
G
G
G
G
C
A
T
T
G
T
G
T
A
C
A
T
T
T
T
G
C
A
T
A
G
G
G
C
C
T
G
A
A
G
G
C
T
A
T
T
T
10750
G
G
A
G
T
T
A
T
T
G
T
A
T
C
C
G
T
G
T
T
T
A
T
T
T
C
T
T
G
A
T
T
ACGGTTAT AATGCAAAAA
10800 |
var(10751):[:0.07]
TGCCTTTGCG TGAAAAACAC ATTAAAGTAT TGGGGTGTTG GGGTTTCATG
10850
TTGACAACCT ACTCTCATAG GTTCA
G
GGGA AAAAAAAGT
C
GTACGATACT
10900 |
var(10876):[C:0.01]
|
var(10890):[T:0.09]
GGCAATTTTT CTGTAATTTT GATGTTGTTT CAGAATAATA AAAT
G
A
A
A
A
A
10950 |
REPEAT
T
G
A
A
A
C
T
G
A
C
C
A
A
G
G
C
C
A
C
C
T
G
G
T
T
A
A
T
A
A
G
T
G
A
C
A
G
C
T
C
T
G
G
G
T
C
A
A
A
A
11000 |
var(10989):[G:0.09]
|
var(10994):[A:0.07]
C
T
C
A
G
G
T
G
T
G
C
C
T
T
T
C
C
C
C
T
A
A
A
G
C
C
A
T
G
C
C
C
T
G
C
C
C
T
G
C
C
A
A
C
C
A
C
AAG
11050 |
var(11024):[C:0.01]
GCCCTGCACA TCC
A
AGTTGG CCTCTGTTCC TGCTCATCAC CTGCAAAACA
11100 |
var(11064):[C:0.04]
GCCCTGCCTC CCCACAGCCA AGTTGCTGGA GCT
T
CGCCCC ACCTGCCCCC
11150 |
var(11134):[G:0.02]
A
A
CCTGCACT GGCCTGACTC CCCCATTCCA CACCTGGCCC AGCACCCACC
11200 |
var(11152):[C:0.05]
ACATGGTGTG GCAGACAGCA CTGGG
A
CAGC TGAAAGACTC CATGCTACAA
11250 |
var(11226):[G:0.50]
ATTGGCACTG CCCAGCTTCC TGCTCCTGGG AGTGGGGTCC GTTGTCTGAG
11300
CTTCCGCTCC CTGGAAGAGC TCCAAACTCC TCAATGGTTT GGGATTTTTC
11350
AAACCAATTC CAAATAAGCC AGGGGAGATT TTCCTGTCT
T
GGTTCCCATC
11400 |
var(11390):[G:0.17]
ATTACCACCT CCACAGTTGG AGATTCCCTC CTAATCCAGA TGCTCAAACC
11450
AGGACCCTAA CAACTAGGGC TTCATATATC ACTGGGACAC TTAGCATAAT
11500
CACCATTGCA GGTTGCCAGA CATCACCCAA AGTGATGTTC TACCAAAGAC
11550
AGAAACTGCA GCTCTCCCAT GACCTTCCAG GTGCTGCCCT GACTCCTCCA
11600
GCTGAACCTG CTAGGGCAGA GGGAAGTGGA AC
A
TGCAGCA TATTTGCCTG
11650 |
var(11633):[G:0.49]
CCACTCTG
C
C CATGTGCCCA CCAA
C
TCGGC TGCAG
G
CTCC AGAGACACTG
11700 |
var(11659):[T:0.18]
|
var(11675):[T:0.07]
|
var(11686):[T:0.01]
GCTGGGGGT
C
CTGGGGCTCA GAGCTGAGCA AGGTTACAGG GCAGACAGGT
11750 |
var(11710):[T:0.01]
TGGCCTGGAT CA
A
CCTGACC AACCTCAGCT GAAGCAGTGA CTTCTTC
A
TT
11800 |
var(11763):[G:0.02]
|
var(11798):[G:0.08]
GTCTGAAACT AAACCAGGAA CCCA
G
TGGAG CTCCCTGAGT GCAGAGTGGG
11850 |
var(11825):[T:0.05]
TGACCTTAGC CAGTGAGGCA TTTCTCTTCT TACAGACCTG GTATTTTTCT
11900
TTACCAGGTT CTGTGCTCCC CTCAAGGGTC CTAAGTATTC CT
C
CAGCCTG
11950 |
var(11943):[G:0.18]
AGTGTTCTGC AGGGAAATGT GCTGTGTAAA CACTATGCCT A
T
TTCCTGCT
12000 |
var(11992):[C:0.07]
TGGAGAACAG GTTTTGTGGT AGAGCTCTCA GGGGT
G
GGGA AGAAGCCTGG
12050 |
var(12036):[A:0.02]
CAGCCCACAT GCTATAAAT
G
CTGTTGTCCA CCTTTA
T
GCT CTAACTTGGA
12100 |
var(12070):[T:0.18]
|
var(12087):[A:0.04]
GGCAG
A
G
A
C
C
C
A
A
G
C
A
G
C
T
G
G
A
G
G
C
T
C
T
G
T
G
T
G
T
G
G
GTGA GTTTAGCCAC
12150 | Exon 1 |
UTR
|
var(12117):[C:0.13]
ATCCCCTAGG TGTTCTCCAG CTTGAGGATC
G
CAGGCAGAG AGGACCAGCC
12200 |
var(12181):[A:0.01]
CAGCAGCCAC AGGCCTGACC AAGGCCCAGG TTGGGAAGGA GGGCAACTCC
12250
CCATTTTCCA CTGGGAGGTG TTTCACAGCA TGGTCAACAT GGATGACCTA
12300
CAAAGACCCT CA
T
GCTTTGA TATCTTCCTT GGCCAGATCC ATCCCTACCA
12350 |
var(12313):[G:0.01]
GGGACTCAGC AGG
G
CCTAAG CAGGGGGAGT GGGAGAACAG ACCCCAAGAG
12400 |
var(12364):[A:0.02]
GAAGGAAGAC CTCATCACTG
A
CTGTGAGAG GGTCATCACC CC
C
CGATGAT
12450 |
var(12421):[G:0.08]
|
var(12443):[T:0.01]
CAC
C
TTGAAG GGTCCAGGCT GTGGGCCCTA TTCATCTCTT TTCATTCTCA
12500 |
var(12454):[T:0.01]
G
G
T
C
G
C
T
G
A
T
T
T
C
T
T
G
G
A
G
C
C
T
G
A
A
A
A
G
A
A
G
GTAACTGGG CATATGAGGG
12550 | Exon 2 |
UTR
ACAGATGGAG TGAGTCAGTG AGTGAGTGAC CTCATCCTTC CT
C
CTAACAG
12600 |
var(12593):[T:0.05]
CCTGGGAGGG ACAGGGCAGG TTTTCTGCAG AGCATGGAAG ATTC
A
G
C
T
G
A
12650 |
REPEAT
A
A
T
C
A
G
A
G
A
G
G
T
G
A
A
G
C
C
A
G
T
T
T
C
C
C
A
G
G
G
T
A
A
C
A
T
A
G
T
G
A
G
G
C
A
C
T
G
A
A
12700 |
var(12652):[G:0.01]
A
G
A
A
A
G
G
A
G
A
C
T
G
C
A
C
T
G
G
A
G
C
C
C
A
G
G
T
C
C
C
T
G
G
G
C
T
C
C
C
C
A
G
A
G
C
T
C
C
T
12750 |
var(12732):[G:0.01]
T
A
C
T
C
T
T
C
C
T
C
C
T
C
CT
C
AGC AG
C
CT
T
GAGA CCCCACAACC TCCAGCC
G
GA
12800 |
var(12767):[T:0.01]
|
var(12773):[T:0.18]
|
var(12776):[G:0.01]
|
var(12798):[A:0.13]
GGCCTGAAGC ATGAGGCCAT GCCAGGTGCC AG
A
TGATGCT TGGAATTTTC
12850 |
var(12833):[G:0.12]
CCGGG
T
GCTT CGGGTCTTCC CAGCACTCTG GTCTCGCCCG CCCTGCCTCT
12900 |
var(12856):[A:0.19]
CGGGCTCTGC CCAGCTTCCT GAGTCCTGAC AGAGCACAGT GGGGGAGATG
12950
TTGGCAGAGG TGGCAGATGG GCTCACGGCC ATCCCTCC
A
G CAG
G
A
G
C
A
G
C
13000 |
var(12989):[T:0.02]
| Exon 3 |
UTR
G
A
C
T
G
G
A
C
C
C
A
G
A
G
C
C
A
T
G
T
G
G
C
T
G
T
G
C
C
C
T
C
T
G
G
C
C
C
T
C
A
A
C
C
T
C
A
T
C
T
13050 |
var(13042):[C:0.46]
M W L C P L A L N L I 11
T
G
A
T
G
G
C
A
G
C
C
T
C
T
G
G
T
G
C
T
G
C
G
T
G
C
G
A
A
G
T
G
A
A
G
G
A
C
G
T
T
T
G
T
G
T
T
G
G
A
13100
L M A A S G A A C E V K D V C V G 28
A
G
C
C
C
T
G
G
T
A
T
C
C
C
C
G
G
C
A
C
T
C
C
T
G
G
A
T
C
C
C
A
C
G
G
C
C
T
G
C
C
A
G
G
C
A
G
G
G
A
13150
S P G I P G T P G S H G L P G R D 45
C
G
G
G
A
G
A
G
A
T
G
G
T
G
T
C
A
A
A
G
G
A
G
A
C
C
C
T
G
G
C
C
C
T
C
C
A
G
GT ACTGTGCTGC
13200 |
var(13164):[C:0.02]
|
var(13181):[A:0.02]
G R D G V K G D P G P P 57
AGACCCCACC CTCAGCTGAG GGACACAGAC CCCTTTTCAG GAGGCCCATC
13250
TGTCCAGGCC CCTAGGCTGT GGGCCATAGT GAGCTGGGGG CTATAGTAAG
13300
CTGGGTGGGA CTTCAGTCTG CAGGG
C
TGGT GGGTTCCTGG GGCCCTTATG
13350 |
var(13326):[G:0.17]
ATGGCGCATC CTGGAGAGTC TGTCCTCATA GTGCCCACGG AGTGATAGCT
13400
GAGCCAGCCC CGGTGATAAT GGGCATCGAG TCTCA
T
TAGC TCCAACCAGT
13450 |
var(13436):[C:0.37]
TGTGGGTGAC AGATCCTACA CATCCATGTC TCTTTTCTCT GCAG
G
C
C
C
C
A
13500 | Exon 4
G P 59
T
G
G
G
T
C
C
G
C
C
T
G
G
A
G
A
A
A
C
A
C
C
A
T
G
T
C
C
T
C
C
T
G
G
G
A
A
T
A
A
T
G
G
G
C
T
G
C
C
T
13550
M G P P G E T P C P P G N N G L P 76
G
G
A
G
C
C
C
C
T
G
G
T
G
T
C
C
C
T
G
G
A
G
A
G
C
G
T
G
G
A
G
A
G
A
A
G
G
G
G
G
A
G
G
C
T
G
G
C
G
A
13600 |
var(13593):[C:0.18]
G A P G V P G E R G E K G E A G E 93
G
A
G
A
G
G
C
C
C
T
C
C
A
G
GTGAGC AGGGCGGGGC AGGT
G
GGCAG TGGAAACATG
13650 |
var(13604):[G:0.04]
|
var(13635):[A:0.38]
R G P P 97
GGCACAGC
G
A
C
CCTGAAGTC AGTTACAC
A
G GGGTGATGGG G
G
TCAGACAA
13700 |
var(13659):[A:0.01]
|
var(13660):[C:0.01]
|
var(13661):[:0.76]
|
var(13679):[G:0.03]
|
var(13692):[A:0.16]
ACCCT
G
CAGG T
A
CCCCAAGG GCATTTGGCT CAACCTAAGT AAGAGAATAT
13750 |
var(13706):[A:0.02]
|
var(13712):[T:0.16]
GAATTTGAGG GAGAAAGCCG AGGTGTCTGG GGAGTGTGGT CACAATTCAG
13800
AGAAGG
G
CAG GTGTGGGAAG TCCTCCGTGC CTCATGACCG CTGATGGGGA
13850 |
var(13807):[A:0.07]
CACACTGAGT CAGGTGTGGG A
C
GAGGGACA GCACTGGGAG GCAGGGGAGG
13900 |
var(13872):[T:0.01]
CATGTCCTGG GATGGAGGCC CTGGGGGCAG TCTGAAGGGT GAATGCGGAC
13950
GAGGCATCCA GGCAGATGGT GTGATCAGGA GCCCCACAGA CAGAGGGGAA
14000
CTTTGAAGCT CAGAGCGGTA AGCAAGTCCA TCAGGGCAGT GCAGAGAGCA
14050
TCATGCTTGC CCTTGGTGGA GGGTGCGGGA GAGGGAC
T
T
G
CCCCACAGAG
14100 |
var(14088):[:0.01]
GCGGGCAGAC AGA
A
CCCCTC
G
AGGGACAGA GCAG
G
AAA
G
A GGACAAGGGG
14150 |
var(14114):[G:0.06]
|
var(14121):[C:0.08]
|
var(14135):[A:0.12]
|
var(14139):[T:0.12]
TGGGGGTCTC AGCAGGGGCA AGGCTTCACT AAAGAATAGG GGACCACGGG
14200
GTGTGGAGAC ACACTGGAAT CT
C
G
TGGACC CTCTGAGCCT AGGGTCTGGG
14250 |
var(14223):[T:0.04]
|
var(14224):[C:0.01]
TGG
T
GCCTAA CAGCAATGAA AGGGCAGAGT TCCAGGATTG CAGATGGCAA
14300 |
var(14254):[C:0.15]
AAC
G
CCTGCG TGGCAGCAAG TGGGAGTCTT CACTGGCCTG CCCCTCCTTC
14350 |
var(14304):[A:0.05]
TGTGTGGGGC ACTCTCCACA G
G
G
C
T
T
C
C
A
G
C
T
C
A
T
C
T
A
G
A
T
G
A
G
G
A
G
C
T
C
14400 | Exon 5
G L P A H L D E E L 107
C
A
A
G
C
C
A
C
A
C
T
C
C
A
C
G
A
C
T
T
C
A
G
A
C
A
T
C
A
A
A
T
C
C
T
G
C
A
G
A
C
A
A
G
G
G
G
A
G
G
14450
Q A T L H D F R H Q I L Q T R G 123
TAAGGGGACC CCCTGGGCCT CACGGGGTAG GAGTTTCCCA CAAATTCCCC
14500
TCATTCTCAG CACCACCTTC TAGAATAGAG ATGACAAACA AGCGTGCACA
14550
TGCAGGTGTT GGGGAAAGGA ATGATGCTTG CTTTTCTGAT GTCTTTGAAT
14600
GGCC
A
AGAGG AGACAAGCAG ACACAATTCA CTCCCCATTT CATAA
G
A
A
A
G
14650 |
var(14605):[C:0.12]
|
REPEAT
C
A
A
G
T
T
C
T
C
T
G
C
C
T
G
T
C
T
T
G
C
T
T
T
C
C
A
C
T
G
A
A
T
C
C
T
A
G
G
A
A
A
T
T
G
C
A
C
C
A
14700
T
T
T
C
T
G
G
C
A
A
T
A
A
G
T
A
A
T
T
G
T
T
A
C
T
T
A
G
A
T
G
A
A
T
G
A
A
T
AA ATGGAGGAGA
14750
GTCTAAAAGT GAATTTAGAA AACTGCAATT GGAAGAGGAA GAGAAGACAC
14800
AGAGAGAGGC AGAGATGGAG AGACTGGGGA GAATCTGGTA GCAGAGACCC
14850
T
AGGTGAGGG AGGTGGCTTA GAGACAAAGT GGTCAGTGGC CTGACC
T
GGA
14900 |
var(14851):[C:0.01]
|
var(14897):[C:0.28]
CTCCTCTGCT CTCAG
C
C
C
T
C
A
G
T
C
T
G
C
A
G
G
G
C
T
C
C
A
T
A
A
T
G
A
C
A
G
T
A
G
G
A
14950 | Exon 6
A L S L Q G S I M T V G 135
G
A
G
A
A
G
G
T
C
T
T
C
T
C
C
A
G
C
A
A
T
G
G
G
C
A
G
T
C
C
A
T
C
A
C
T
T
T
T
G
A
T
G
C
C
A
T
T
C
A
15000 |
var(14965):[T:0.23]
E K V F S S N G Q S I T F D A I Q 152
G
G
A
G
G
C
A
T
G
T
G
C
C
A
G
A
G
C
A
G
G
C
G
G
C
C
G
C
A
T
T
G
C
T
G
T
C
C
C
A
A
G
G
A
A
T
C
C
A
G
15050
E A C A R A G G R I A V P R N P 168
A
G
G
A
A
A
A
T
G
A
G
G
C
C
A
T
T
G
C
A
A
G
C
T
T
C
G
T
G
A
A
G
A
A
G
T
A
C
A
A
C
A
C
A
T
A
T
G
C
C
15100
E E N E A I A S F V K K Y N T Y A 185
T
A
T
G
T
A
G
G
C
C
T
G
A
C
T
G
A
G
G
G
T
C
C
C
A
G
C
C
C
T
G
G
A
G
A
C
T
T
C
C
G
C
T
A
C
T
C
A
G
A
15150
Y V G L T E G P S P G D F R Y S D 202
T
G
G
G
A
C
C
C
C
T
G
T
A
A
A
C
T
A
C
A
C
C
A
A
C
T
G
G
T
A
C
C
G
A
G
G
G
G
A
G
C
C
T
G
C
A
G
G
T
C
15200 |
var(15151):[C:0.01]
G T P V N Y T N W Y R G E P A G 218
G
G
G
G
A
A
A
A
G
A
G
C
A
G
T
G
T
G
T
G
G
A
G
A
T
G
T
A
C
A
C
A
G
A
T
G
G
G
C
A
G
T
G
G
A
A
T
G
A
C
15250 |
var(15212):[A:0.24]
R G K E Q C V E M Y T D G Q W N D 235
A
G
G
A
A
C
T
G
C
C
T
G
T
A
C
T
C
C
C
G
A
C
T
G
A
C
C
A
T
C
T
G
T
G
A
G
T
T
C
T
G
A
G
A
G
G
C
A
T
T
15300 |
UTR
R N C L Y S R L T I C E F 248
T
A
G
G
C
C
A
T
G
G
G
A
C
A
G
G
G
A
G
G
A
T
C
C
T
G
T
C
T
G
G
C
C
T
T
C
A
G
T
T
T
C
C
A
T
C
C
C
C
A
15350 |
var(15320):[A:0.01]
|
var(15321):[G:0.03]
G
G
A
T
C
C
A
C
T
T
G
G
T
C
T
G
T
G
A
G
A
T
G
C
T
A
G
A
A
C
T
C
C
C
T
T
T
C
A
A
C
A
G
A
A
T
T
C
A
C
15400
T
T
G
T
G
G
C
T
A
T
T
A
G
A
G
C
T
G
G
A
G
G
C
A
C
C
C
T
T
A
G
C
C
A
C
T
T
C
A
T
T
C
C
C
C
T
G
A
T
G
15450 |
var(15407):[A:0.03]
|
var(15444):[T:0.05]
G
G
C
C
C
T
G
A
C
T
C
T
T
C
C
C
C
A
T
A
A
T
C
A
C
T
G
A
C
C
A
G
C
C
T
T
G
A
C
A
C
T
C
C
C
C
T
T
G
C
15500
A
A
A
C
C
A
T
C
C
C
A
G
C
A
C
T
G
C
A
C
C
C
C
A
G
G
C
A
G
C
C
A
C
T
C
C
T
A
G
C
C
T
T
G
G
C
C
T
T
T
15550
G
G
C
A
T
G
A
G
A
T
G
G
A
G
G
C
C
T
C
C
T
T
A
T
T
C
C
C
C
A
T
C
T
G
G
T
C
C
A
G
T
T
C
C
T
T
C
A
C
T
15600 |
var(15567):[T:0.15]
|
REPEAT
T
A
C
A
G
A
T
G
G
C
A
G
C
A
G
T
G
A
G
G
C
C
T
T
G
G
G
G
T
A
G
A
A
G
G
A
T
C
C
T
C
C
A
A
A
G
T
C
A
C
15650 |
var(15649):[G:0.05]
A
C
A
G
A
G
T
G
C
C
T
G
C
C
T
C
C
T
G
G
T
C
C
C
C
T
C
A
G
C
T
C
T
G
C
C
T
C
T
G
C
A
G
C
C
C
A
C
T
G
15700 |
var(15685):[T:0.02]
C
C
T
G
C
C
C
A
G
T
G
C
C
A
T
C
A
G
G
A
T
G
A
G
C
A
G
T
A
C
C
G
G
C
C
A
A
G
C
A
T
A
A
T
G
A
C
A
G
A
15750 |
var(15729):[C:0.39]
|
var(15739):[A:0.01]
G
A
G
A
G
G
C
A
G
A
T
T
T
C
A
G
G
G
A
A
G
C
C
C
T
G
A
C
T
G
T
G
T
G
G
A
G
C
T
A
A
G
G
A
C
A
C
A
G
T
15800
G
G
A
G
A
T
T
C
T
C
T
G
G
C
A
C
T
C
T
G
A
G
G
T
C
T
C
T
G
T
G
G
C
A
G
G
C
C
T
G
G
T
C
A
G
G
C
T
C
T
15850 |
var(15801):[A:0.39]
|
var(15802):[T:0.39]
|
var(15849):[G:0.15]
C
C
A
G
G
T
G
G
T
C
A
G
A
G
G
G
C
C
C
A
G
T
G
G
T
G
C
C
C
C
A
G
C
A
C
G
G
T
G
G
T
G
C
C
C
A
A
G
C
C
15900
A
A
C
C
C
T
G
T
G
A
C
T
G
A
C
A
T
G
T
A
C
G
A
T
T
C
A
C
T
C
C
T
T
T
G
A
G
T
C
T
T
T
G
G
A
T
G
C
C
A
15950
A
C
T
C
A
G
C
C
C
C
C
T
G
A
C
C
T
G
G
A
G
G
C
A
G
C
C
G
G
C
C
A
A
G
G
C
C
T
C
T
A
G
G
G
A
A
G
A
G
C
16000
C
C
C
C
C
A
C
T
G
C
A
G
A
C
A
T
G
A
C
C
C
G
A
G
T
A
A
C
T
T
T
C
T
G
C
T
G
A
T
G
A
A
C
A
A
A
T
C
T
G
16050
C
A
C
C
C
C
A
C
T
T
C
A
G
A
C
C
T
C
G
G
T
G
G
G
C
A
T
T
C
A
C
A
C
C
A
C
C
C
C
C
C
A
T
G
C
C
A
C
C
G
16100 |
var(16083):[A:0.07]
G
C
T
C
C
A
C
T
T
T
C
C
C
C
T
T
T
T
A
T
T
A
A
T
A
C
A
T
T
C
A
C
C
C
A
G
A
T
A
A
T
C
A
T
T
A
A
A
A
T
16150
T
A
A
C
A
T
G
T
G
C
C
A
G
G
T
C
T
T
A
G
G
A
T
G
T
G
T
C
T
T
G
G
G
G
T
G
G
G
C
A
C
A
G
T
A
C
C
C
G
G
16200 |
REPEAT
T
G
A
C
T
C
T
T
G
G
G
G
A
T
A
T
T
T
A
T
T
T
A
T
T
T
T
C
C
C
T
G
A
G
C
C
T
A
T
A
T
C
T
T
C
A
T
C
T
G
16250 |
var(16209):[A:0.05]
T
G
A
A
A
T
G
G
G
G
A
T
A
A
A
A
A
T
A
C
T
T
G
T
T
G
C
T
G
T
C
A
C
A
A
T
T
A
T
T
A
C
C
A
T
C
T
C
T
C
16300
C
A
G
C
T
A
G
C
A
A
A
A
T
T
A
C
T
A
C
C
A
G
A
G
C
C
G
T
T
A
C
T
A
C
A
C
A
C
A
A
A
G
G
C
T
A
T
T
G
A
16350 |
REPEAT
C
C
G
A
G
C
A
C
A
T
A
C
C
A
T
G
T
G
C
C
A
C
A
C
A
C
C
T
T
G
A
C
A
A
A
A
T
C
T
T
T
T
A
A
T
A
C
A
G
T
16400
T
T
A
T
T
A
T
G
T
A
C
T
A
T
T
C
A
A
T
C
T
T
T
A
C
A
C
A
A
T
G
T
C
A
C
G
G
G
A
C
C
A
G
T
A
T
T
G
T
T
16450
T
A
C
C
C
A
A
T
T
T
T
T
T
A
T
A
A
G
G
A
C
A
C
T
G
A
A
G
C
T
T
A
G
A
G
G
A
G
T
G
A
A
A
T
G
T
T
T
T
G
16500
A
G
T
G
T
T
A
T
T
T
C
A
G
A
G
A
G
C
A
A
A
T
G
G
C
A
A
A
G
A
C
T
G
G
A
T
C
C
A
A
A
C
C
C
A
T
C
T
T
C
16550 |
var(16535):[C:0.10]
C
T
G
G
A
C
C
T
G
A
A
G
T
T
C
A
T
G
C
T
C
C
C
A
G
C
C
A
C
C
C
C
A
C
C
C
C
T
G
A
G
C
T
G
A
A
T
A
A
A
16600
GATGATTTAA GCATAATAAA TCGTTAGTGT GTTCACATGA GTTTCCATAG
16650
CTTTGGTTCC AAGAAACATC ACATTTCTGT TTTTGTAAAT GAAATGAACT
16700
CTGGCTCTGA GCCCCCACTT TCCTCAAGAT TGGAAAATTC AATCTCAGGA
16750
TGTGCTTTCT TTGTTTGATG GGAGGGGCAA CCTGCTCTCC TCGCTATGAT
16800
GCTGCTG
G
AG GTTGGGGAGC TACAGACACC
A
TTTGGAAGA ACACATGGGC
16850 |
var(16808):[A:0.01]
|
var(16831):[G:0.05]
ATCTTGAATC CATGTGGTGC ATTTGTGGGT GGGGATATAA TGCCTTCC
G
T
16900 |
var(16899):[A:0.01]
CCTCTGCGCA GCCACCTGAA TGATTTCTGC AGCCCAGCAG TGATGTTGGC
16950
ACTCAGGGCT CAGTTCCAGG CCTCAGTGAG CCATCCTAGT CTCATGT
C
GG
17000 |
var(16998):[T:0.01]
CTTGAAATGG GACCACTG
C
C CCATACCCCA GGGCTGTGCA GGATTGAGAC
17050 |
var(17019):[T:0.06]
AATGTCCCCA ATTGCTTGAG GAGGCAGCCA CGTATGTGTC CCACCTCCAG
17100
AAAGGCTCCC ACT
A
CTCCCA CCCTCACACC TGCGAACACT CTCTCTCGTG
17150 |
var(17114):[T:0.04]
GATTTACTGC TTTTCTTGGG CAGAGGCAAG CTCTGGATCA AGACCCACAA
17200
AATCAGATGA GAATGAGGGG AATAATTTCT GATTCTTTTC TGAATGATAA
17250
TTTTTAATCT GGTCACCATT CCACATGTGC TTGGGACCCA GCACACACAT
17300
TATTGAGCCT TCCCGTAAAT TAAGAGAAAA ACAAGGAGAA GCATGTA
C
A
A
17350 |
REPEAT
A
T
G
T
T
C
C
T
T
G
A
C
T
T
A
T
G
A
T
G
T
G
G
T
T
A
G
G
T
C
C
T
G
A
T
A
A
A
C
A
C
A
T
T
G
C
A
A
A
A
17400
T
G
A
T
A
T
C
T
T
A
A
A
T
G
G
A
A
A
A
T
G
C
A
T
T
T
A
A
T
A
C
A
T
C
T
A
A
C
C
T
A
C
C
A
A
A
C
A
T
C
17450
A
T
A
G
C
T
G
A
G
C
C
T
A
G
A
C
T
A
C
T
T
T
A
A
C
C
A
T
G
C
C
C
A
G
A
A
C
C
C
T
A
T
G
T
T
A
G
C
C
T
17500 |
var(17480):[T:0.07]
G
C
A
G
T
T
A
G
G
C
A
A
A
A
C
T
A
T
C
T
A
A
C
A
C
A
A
G
G
T
C
T
A
T
T
T
T
A
T
A
A
T
A
G
G
G
T
G
C
T
17550
G
A
C
T
A
T
C
T
C
A
T
G
G
A
A
T
T
T
A
T
T
G
G
C
T
A
C
T
G
T
A
C
T
G
G
A
G
G
T
G
A
A
T
G
A
A
T
G
G
T
17600
T
G
T
A
T
G
T
G
T
A
C
C
T
G
A
A
G
T
G
T
G
G
C
T
T
C
T
C
C
T
G
A
A
T
T
C
A
C
A
T
C
G
C
T
T
T
T
G
G
A
17650
C
C
A
A
T
G
T
G
A
A
G
T
C
T
A
T
A
A
A
T
T
T
T
A
A
G
T
C
A
A
G
C
C
T
C
C
A
T
A
A
A
T
C
C
A
G
G
A
C
C
17700
G
T
G
T
G
TATTC CGAACTTCAT AAGTAAATAA GACTCTGAA
A
ATTTATGTCT
17750 |
var(17740):[C:0.01]
TCTCATTTCT TGGGAGGATT ATTTTTACTT TCTTTATGCA TTTATTTGCT
17800
ATTGTTACTA TTTTATCATA TTTTAAATTA ACTATTGCTG GTTTATGAGA
17850
AAAA
C
TCTTG ATTTATTTTT TATTCATCTT ATACCCAACC ATCTTTTTGG
17900 |
var(17855):[T:0.01]
ATTCTCATTT TTTTCCTAAT ATTAATACTT CTAAGATAAT TGA
T
T
C
T
T
T
T
17950 |
REPEAT
A
T
T
T
T
T
T
T
A
T
T
T
C
T
A
T
T
T
T
T
G
A
G
A
C
A
G
A
G
T
C
T
C
T
C
T
T
T
G
T
T
G
C
C
T
G
G
G
C
T
18000
A
G
A
G
T
G
C
A
G
T
G
G
C
A
C
A
A
T
C
T
T
G
G
C
T
C
A
C
T
G
G
A
A
C
C
T
C
T
G