Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000207 00000 ------------ G 0.87 0.87 0.87 C 0.13 0.13 0.13 0000 --- --- --- --- 000498 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 000555 00000 ------------ C 0.90 0.93 0.91 A 0.10 0.07 0.09 0000 --- --- --- --- 000760 00000 ------------ T 0.92 0.93 0.93 G 0.08 0.07 0.07 0000 --- --- --- --- 000773 00000 ------------ T 0.69 0.98 0.83 C 0.31 0.02 0.17 0000 --- --- --- --- 000793 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 000859 00000 ------------ C 0.89 0.98 0.93 T 0.11 0.02 0.07 0000 --- --- --- --- 001063 00000 ------------ A 0.96 0.93 0.94 T 0.04 0.07 0.06 0000 --- --- --- --- 001088 00000 ------------ A 1.00 0.95 0.98 G 0.00 0.05 0.02 0000 --- --- --- --- 001457 00000 ------------ G 0.90 0.97 0.94 C 0.10 0.03 0.06 0000 --- --- --- --- 001487 00000 ------------ - 0.02 0.07 0.05 + 0.98 0.93 0.95 0000 --- --- --- --- 001489 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 001583 00000 ------------ T 0.25 0.78 0.52 G 0.75 0.22 0.48 0000 --- --- --- --- 001587 00000 ------------ C 0.98 0.93 0.96 T 0.02 0.07 0.04 0000 --- --- --- --- 001637 00000 ------------ G 0.90 0.93 0.91 A 0.10 0.07 0.09 0000 --- --- --- --- 001775 00000 ------------ T 0.85 0.87 0.86 G 0.15 0.13 0.14 0000 --- --- --- --- 001816 00000 ------------ A 0.92 0.95 0.93 G 0.08 0.05 0.07 0000 --- --- --- --- 002099 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 002339 00000 ------------ A 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 002396 00000 ------------ C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 002472 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 003039 00000 ------------ G 0.50 0.87 0.68 T 0.50 0.13 0.32 0000 --- --- --- --- 003812 00000 ------------ A 0.82 0.86 0.84 G 0.18 0.14 0.16 0000 --- --- --- --- 004434 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 004439 00000 ------------ C 0.25 0.80 0.53 A 0.75 0.20 0.47 0000 --- --- --- --- 004588 00000 ------------ - 0.00 0.04 0.02 + 1.00 0.96 0.98 0000 --- --- --- --- 004698 00000 ------------ C 0.91 0.93 0.92 T 0.09 0.07 0.08 0000 --- --- --- --- 004794 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 004888 00000 ------------ T 0.69 0.98 0.83 C 0.31 0.02 0.17 0000 --- --- --- --- 004901 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 004988 00000 ------------ A 0.89 0.93 0.91 T 0.11 0.07 0.09 0000 --- --- --- --- 005147 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 005160 00000 ------------ C 0.89 0.93 0.91 T 0.11 0.07 0.09 0000 --- --- --- --- 005428 00000 ------------ A 0.96 0.93 0.95 G 0.04 0.07 0.05 0000 --- --- --- --- 005576 00000 ------------ C 1.00 0.95 0.98 T 0.00 0.05 0.02 0000 --- --- --- --- 005578 00000 ------------ G 0.89 0.93 0.91 A 0.11 0.07 0.09 0000 --- --- --- --- 005873 00000 ------------ T 0.72 0.98 0.85 G 0.28 0.02 0.15 0000 --- --- --- --- 005883 00000 ------------ C 0.83 0.98 0.90 T 0.17 0.02 0.10 0000 --- --- --- --- 005914 00000 ------------ C 0.80 0.91 0.86 T 0.20 0.09 0.14 0000 --- --- --- --- 006198 00000 ------------ C 0.88 0.93 0.90 G 0.12 0.07 0.10 0000 --- --- --- --- 006199 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 006333 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 006527 00000 ------------ A 0.96 0.93 0.95 C 0.04 0.07 0.05 0000 --- --- --- --- 006531 00000 ------------ - 0.06 0.07 0.06 + 0.94 0.93 0.94 0000 --- --- --- --- 006654 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 006813 00000 ------------ A 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 007044 00000 ------------ G 0.68 1.00 0.84 A 0.33 0.00 0.16 0000 --- --- --- --- 007244 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 007276 00000 ------------ T 1.00 0.85 0.93 C 0.00 0.15 0.07 0000 --- --- --- --- 007401 00000 ------------ A 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 007420 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 007421 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 007479 00000 ------------ G 0.93 0.93 0.93 A 0.07 0.07 0.07 0000 --- --- --- --- 007595 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 007644 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 007829 00000 ------------ T 0.91 0.95 0.93 C 0.09 0.05 0.07 0000 --- --- --- --- 008051 00000 ------------ T 1.00 0.95 0.98 C 0.00 0.05 0.02 0000 --- --- --- --- 008072 00000 ------------ G 0.89 0.98 0.93 A 0.11 0.02 0.07 0000 --- --- --- --- 008348 00000 ------------ G 0.96 0.34 0.66 A 0.04 0.66 0.34 0000 --- --- --- --- 008368 00000 ------------ C 0.85 0.89 0.87 T 0.15 0.11 0.13 0000 --- --- --- --- 008588 00000 ------------ A 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 008858 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 008877 00000 ------------ G 0.28 0.80 0.54 A 0.72 0.20 0.46 0000 --- --- --- --- 008979 00000 ------------ C 1.00 0.96 0.98 T 0.00 0.04 0.02 0000 --- --- --- --- 009325 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 009354 00000 ------------ T 0.90 0.93 0.91 C 0.10 0.07 0.09 0000 --- --- --- --- 009516 00000 ------------ C 0.94 0.93 0.94 T 0.06 0.07 0.06 0000 --- --- --- --- 009525 00000 ------------ G 1.00 0.96 0.98 C 0.00 0.04 0.02 0000 --- --- --- --- 009534 00000 ------------ A 0.83 0.87 0.85 G 0.17 0.13 0.15 0000 --- --- --- --- 009673 00000 ------------ G 0.90 0.93 0.91 A 0.10 0.07 0.09 0000 --- --- --- --- 009682 00000 ------------ T 0.90 0.93 0.91 C 0.10 0.07 0.09 0000 --- --- --- --- 009687 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 009972 00000 ------------ G 0.96 0.93 0.95 T 0.04 0.07 0.05 0000 --- --- --- --- 010098 00000 ------------ C 1.00 0.95 0.98 T 0.00 0.05 0.02 0000 --- --- --- --- 010516 00000 ------------ - 0.89 0.93 0.91 + 0.11 0.07 0.09 0000 --- --- --- --- 010751 00000 ------------ - 0.13 0.00 0.07 + 0.87 1.00 0.93 0000 --- --- --- --- 010876 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 010890 00000 ------------ C 0.90 0.93 0.91 T 0.10 0.07 0.09 0000 --- --- --- --- 010989 00000 ------------ T 0.89 0.93 0.91 G 0.11 0.07 0.09 0000 --- --- --- --- 010994 00000 ------------ G 0.87 1.00 0.93 A 0.13 0.00 0.07 0000 --- --- --- --- 011024 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 011064 00000 ------------ A 0.98 0.95 0.96 C 0.02 0.05 0.04 0000 --- --- --- --- 011134 00000 ------------ T 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 011152 00000 ------------ A 0.95 0.95 0.95 C 0.05 0.05 0.05 0000 --- --- --- --- 011226 00000 ------------ A 0.24 0.78 0.50 G 0.76 0.23 0.50 0000 --- --- --- --- 011390 00000 ------------ T 0.67 0.98 0.83 G 0.33 0.02 0.17 0000 --- --- --- --- 011633 00000 ------------ A 0.25 0.78 0.51 G 0.75 0.22 0.49 0000 --- --- --- --- 011659 00000 ------------ C 0.67 0.98 0.82 T 0.33 0.02 0.18 0000 --- --- --- --- 011675 00000 ------------ C 0.88 0.98 0.93 T 0.12 0.02 0.07 0000 --- --- --- --- 011686 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 011710 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 011763 00000 ------------ A 0.98 0.98 0.98 G 0.02 0.02 0.02 0000 --- --- --- --- 011798 00000 ------------ A 0.88 0.97 0.92 G 0.12 0.03 0.08 0000 --- --- --- --- 011825 00000 ------------ G 0.94 0.97 0.95 T 0.06 0.03 0.05 0000 --- --- --- --- 011943 00000 ------------ C 0.67 0.98 0.82 G 0.33 0.02 0.18 0000 --- --- --- --- 011992 00000 ------------ T 0.88 1.00 0.93 C 0.12 0.00 0.07 0000 --- --- --- --- 012036 00000 ------------ G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 012070 00000 ------------ G 0.67 0.98 0.82 T 0.33 0.02 0.18 0000 --- --- --- --- 012087 00000 ------------ T 0.98 0.93 0.96 A 0.02 0.07 0.04 0000 --- --- --- --- 012117 00012 5' UTR G 0.83 0.91 0.87 C 0.17 0.09 0.13 0000 --- --- --- --- 012181 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 012313 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 012364 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 012421 00000 ------------ A 0.88 0.98 0.92 G 0.12 0.02 0.08 0000 --- --- --- --- 012443 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012454 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012593 00000 ------------ C 0.93 0.97 0.95 T 0.07 0.03 0.05 0000 --- --- --- --- 012652 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 012732* 012767 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012773 00000 ------------ C 0.70 0.97 0.82 T 0.30 0.03 0.18 0000 --- --- --- --- 012776 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 012798 00000 ------------ G 0.80 0.93 0.87 A 0.20 0.07 0.13 0000 --- --- --- --- 012833 00000 ------------ A 0.78 0.98 0.88 G 0.22 0.02 0.12 0000 --- --- --- --- 012856 00000 ------------ T 0.75 0.87 0.81 A 0.25 0.13 0.19 0000 --- --- --- --- 012989* 013042 00110 NON-SYN A 0.27 0.83 0.54 C 0.73 0.17 0.46 0009 AAC ACC ASN(N) THR(T) 013164 00232 NON-SYN G 1.00 0.96 0.98 C 0.00 0.04 0.02 0050 GTC CTC VAL(V) LEU(L) 013181 00249 SYNON C 1.00 0.96 0.98 A 0.00 0.04 0.02 0055 GGC GGA GLY(G) GLY(G) 013326 00000 ------------ C 0.72 0.93 0.83 G 0.28 0.07 0.17 0000 --- --- --- --- 013436 00000 ------------ T 0.46 0.82 0.63 C 0.54 0.18 0.37 0000 --- --- --- --- 013593 00355 NON-SYN G 0.75 0.89 0.82 C 0.25 0.11 0.18 0091 GCT CCT ALA(A) PRO(P) 013604 00366 SYNON A 0.92 1.00 0.96 G 0.08 0.00 0.04 0094 AGA AGG ARG(R) ARG(R) 013635 00000 ------------ G 0.42 0.83 0.62 A 0.58 0.17 0.38 0000 --- --- --- --- 013659 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013660 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 013661 00000 ------------ - 0.52 1.00 0.76 + 0.48 0.00 0.24 0000 --- --- --- --- 013679 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 013692 00000 ------------ G 1.00 0.67 0.84 A 0.00 0.33 0.16 0000 --- --- --- --- 013706 00000 ------------ G 0.98 0.98 0.98 A 0.02 0.02 0.02 0000 --- --- --- --- 013712 00000 ------------ A 0.84 0.85 0.84 T 0.16 0.15 0.16 0000 --- --- --- --- 013807 00000 ------------ G 0.87 1.00 0.93 A 0.13 0.00 0.07 0000 --- --- --- --- 013872 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 014088 00000 ------------ - 0.00 0.02 0.01 + 1.00 0.98 0.99 0000 --- --- --- --- 014114 00000 ------------ A 0.88 1.00 0.94 G 0.12 0.00 0.06 0000 --- --- --- --- 014121 00000 ------------ G 0.90 0.93 0.92 C 0.10 0.07 0.08 0000 --- --- --- --- 014135 00000 ------------ G 0.76 1.00 0.88 A 0.24 0.00 0.12 0000 --- --- --- --- 014139 00000 ------------ G 0.76 1.00 0.88 T 0.24 0.00 0.12 0000 --- --- --- --- 014223 00000 ------------ C 0.95 0.98 0.96 T 0.05 0.02 0.04 0000 --- --- --- --- 014224 00000 ------------ G 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 014254 00000 ------------ T 0.74 0.95 0.85 C 0.26 0.05 0.15 0000 --- --- --- --- 014304 00000 ------------ G 1.00 0.91 0.95 A 0.00 0.09 0.05 0000 --- --- --- --- 014605 00000 ------------ A 0.85 0.91 0.88 C 0.15 0.09 0.12 0000 --- --- --- --- 014851 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 014897 00000 ------------ T 0.54 0.91 0.72 C 0.46 0.09 0.28 0000 --- --- --- --- 014965 00504 SYNON C 0.67 0.87 0.77 T 0.33 0.13 0.23 0140 TCC TCT SER(S) SER(S) 015151 00690 SYNON T 0.98 1.00 0.99 C 0.02 0.00 0.01 0202 GAT GAC ASP(D) ASP(D) 015212 00751 NON-SYN C 0.65 0.89 0.76 A 0.35 0.11 0.24 0223 CAG AAG GLN(Q) LYS(K) 015320 00859 3' UTR G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 015321 00860 3' UTR A 0.95 0.98 0.97 G 0.05 0.02 0.03 0000 --- --- --- --- 015407 00946 3' UTR C 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 015444 00983 3' UTR C 0.92 0.98 0.95 T 0.08 0.02 0.05 0000 --- --- --- --- 015567 01106 3' UTR C 0.77 0.93 0.85 T 0.23 0.07 0.15 0000 --- --- --- --- 015649 01188 3' UTR A 0.92 0.98 0.95 G 0.08 0.02 0.05 0000 --- --- --- --- 015685 01224 3' UTR C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 015729 01268 3' UTR A 0.42 0.80 0.61 C 0.58 0.20 0.39 0000 --- --- --- --- 015739 01278 3' UTR C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 015801 01340 3' UTR G 0.42 0.80 0.61 A 0.58 0.20 0.39 0000 --- --- --- --- 015802 01341 3' UTR G 0.42 0.80 0.61 T 0.58 0.20 0.39 0000 --- --- --- --- 015849 01388 3' UTR C 0.77 0.93 0.85 G 0.23 0.07 0.15 0000 --- --- --- --- 016083 01622 3' UTR C 0.85 1.00 0.93 A 0.15 0.00 0.07 0000 --- --- --- --- 016209 01748 3' UTR G 0.92 0.98 0.95 A 0.08 0.02 0.05 0000 --- --- --- --- 016535 02074 3' UTR A 0.87 0.93 0.90 C 0.13 0.07 0.10 0000 --- --- --- --- 016808 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016831 00000 ------------ A 0.92 0.98 0.95 G 0.08 0.02 0.05 0000 --- --- --- --- 016899 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016998 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 017019 00000 ------------ C 0.91 0.98 0.94 T 0.09 0.02 0.06 0000 --- --- --- --- 017114 00000 ------------ A 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 017480 00000 ------------ C 0.89 0.98 0.93 T 0.11 0.02 0.07 0000 --- --- --- --- 017740 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 017855 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 001487: A 004588: TTTG 006531: A 010516: CAAA 010751: G 013661: C 014088: TTG The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 012732 C 0.04 0.00 0.02 G 0.02 0.00 0.01 T 0.93 1.00 0.96 012989 A 0.59 0.90 0.74 G 0.37 0.10 0.24 T 0.04 0.00 0.02