Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000084 00000 ------------ G 0.91 1.00 0.96 A 0.09 0.00 0.04 0000 --- --- --- --- 000118 00000 ------------ T 0.67 0.93 0.79 C 0.33 0.07 0.21 0000 --- --- --- --- 000137 00000 ------------ G 0.98 0.91 0.95 T 0.02 0.09 0.05 0000 --- --- --- --- 000161 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 000210 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 000297 00000 ------------ G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 000658 00000 ------------ T 0.44 0.83 0.63 C 0.56 0.17 0.37 0000 --- --- --- --- 000741 00000 ------------ G 0.98 0.89 0.94 A 0.02 0.11 0.06 0000 --- --- --- --- 001221 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 001292 00000 ------------ A 0.67 0.93 0.79 G 0.33 0.07 0.21 0000 --- --- --- --- 002149 00000 ------------ C 0.98 0.98 0.98 T 0.02 0.02 0.02 0000 --- --- --- --- 002414 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 002476 00000 ------------ C 0.95 1.00 0.97 T 0.05 0.00 0.03 0000 --- --- --- --- 002575 00000 ------------ C 0.97 0.88 0.93 T 0.03 0.12 0.07 0000 --- --- --- --- 002671 00000 ------------ A 0.95 1.00 0.97 T 0.05 0.00 0.03 0000 --- --- --- --- 002740 00000 ------------ G 0.93 1.00 0.96 C 0.07 0.00 0.04 0000 --- --- --- --- 002877 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 003053 00154 SYNON G 0.95 1.00 0.98 T 0.05 0.00 0.02 0022 GGG GGT GLY(G) GLY(G) 003096 00000 ------------ G 0.88 0.76 0.82 A 0.12 0.24 0.18 0000 --- --- --- --- 003177 00000 ------------ - 0.60 0.83 0.72 + 0.40 0.17 0.28 0000 --- --- --- --- 003293 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 003472 00000 ------------ G 0.43 0.83 0.63 C 0.57 0.17 0.37 0000 --- --- --- --- 003950 00000 ------------ A 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 004318 00000 ------------ C 0.98 0.89 0.93 T 0.02 0.11 0.07 0000 --- --- --- --- 004348 00000 ------------ G 0.52 0.83 0.67 T 0.48 0.17 0.33 0000 --- --- --- --- 004627 00000 ------------ A 0.59 0.83 0.71 G 0.41 0.17 0.29 0000 --- --- --- --- 004873 00340 SYNON T 1.00 0.98 0.99 C 0.00 0.02 0.01 0084 CGT CGC ARG(R) ARG(R) 004942 00409 SYNON T 0.65 0.83 0.73 C 0.35 0.17 0.27 0107 CTT CTC LEU(L) LEU(L) 004972 00439 SYNON T 0.94 1.00 0.97 C 0.06 0.00 0.03 0117 GGT GGC GLY(G) GLY(G) 005105 00000 ------------ C 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 005144 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005286 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 005337 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005358 00000 ------------ G 0.65 0.83 0.73 A 0.35 0.17 0.27 0000 --- --- --- --- 005531 00000 ------------ A 0.67 0.93 0.80 G 0.33 0.07 0.20 0000 --- --- --- --- 005566 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 005651 00000 ------------ C 0.65 0.83 0.73 T 0.35 0.17 0.27 0000 --- --- --- --- 005809 00000 ------------ T 0.85 1.00 0.93 C 0.15 0.00 0.07 0000 --- --- --- --- 005818 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 005896 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 006165 00665 NON-SYN T 0.81 0.74 0.78 C 0.19 0.26 0.22 0193 TTT CTT PHE(F) LEU(L) 006313 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 006330 00000 ------------ G 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 006358 00000 ------------ T 0.92 0.72 0.82 C 0.08 0.28 0.18 0000 --- --- --- --- 006428 00000 ------------ C 0.65 0.83 0.73 A 0.35 0.17 0.27 0000 --- --- --- --- 006719 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 006736 00000 ------------ T 0.67 0.93 0.80 C 0.33 0.07 0.20 0000 --- --- --- --- 006944 00000 ------------ A 0.65 0.83 0.73 T 0.35 0.17 0.27 0000 --- --- --- --- 007302 00000 ------------ A 0.98 0.89 0.94 G 0.02 0.11 0.06 0000 --- --- --- --- 007418 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 007441 00000 ------------ C 0.83 0.98 0.90 T 0.17 0.02 0.10 0000 --- --- --- --- 007668 00000 ------------ C 0.98 0.89 0.94 T 0.02 0.11 0.06 0000 --- --- --- --- 007830 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 008061 00000 ------------ T 0.67 0.93 0.80 C 0.33 0.07 0.20 0000 --- --- --- --- 008090 00000 ------------ T 0.98 0.89 0.94 G 0.02 0.11 0.06 0000 --- --- --- --- 008106 00000 ------------ T 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 008206 00000 ------------ G 0.94 0.98 0.96 T 0.06 0.02 0.04 0000 --- --- --- --- 008248 00000 ------------ C 0.98 0.89 0.94 A 0.02 0.11 0.06 0000 --- --- --- --- 008535 00000 ------------ G 0.98 0.89 0.94 C 0.02 0.11 0.06 0000 --- --- --- --- 008777 00689 NON-SYN G 0.98 1.00 0.99 C 0.02 0.00 0.01 0201 GAG CAG GLU(E) GLN(Q) 008813 00725 NON-SYN C 0.67 0.93 0.80 T 0.33 0.07 0.20 0213 CCT TCT PRO(P) SER(S) 009100 00000 ------------ - 0.04 0.00 0.02 + 0.96 1.00 0.98 0000 --- --- --- --- 009389 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 010291 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 010308 00000 ------------ G 0.67 0.98 0.83 A 0.33 0.02 0.17 0000 --- --- --- --- 010550 00000 ------------ T 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 010726 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 010863 00000 ------------ C 0.98 0.89 0.94 T 0.02 0.11 0.06 0000 --- --- --- --- 011173 00000 ------------ A 0.54 0.83 0.68 C 0.46 0.17 0.32 0000 --- --- --- --- 011196 00000 ------------ - 0.35 0.02 0.19 + 0.65 0.98 0.81 0000 --- --- --- --- 011238 00000 ------------ T 0.65 0.98 0.81 C 0.35 0.02 0.19 0000 --- --- --- --- 011265 00000 ------------ A 1.00 0.89 0.94 T 0.00 0.11 0.06 0000 --- --- --- --- 011313 00000 ------------ - 0.35 0.02 0.19 + 0.65 0.98 0.81 0000 --- --- --- --- 011324 00000 ------------ G 0.83 0.98 0.90 C 0.17 0.02 0.10 0000 --- --- --- --- 011374 00000 ------------ C 0.98 0.89 0.94 G 0.02 0.11 0.06 0000 --- --- --- --- 011414 00000 ------------ T 0.98 0.89 0.94 G 0.02 0.11 0.06 0000 --- --- --- --- 011434 00000 ------------ A 0.98 0.89 0.94 C 0.02 0.11 0.06 0000 --- --- --- --- 011503 00000 ------------ T 0.69 0.98 0.83 A 0.31 0.02 0.17 0000 --- --- --- --- 011534 00000 ------------ C 0.69 0.98 0.83 T 0.31 0.02 0.17 0000 --- --- --- --- 011563 00000 ------------ T 0.69 0.98 0.83 G 0.31 0.02 0.17 0000 --- --- --- --- 011710 00000 ------------ A 0.98 0.89 0.94 T 0.02 0.11 0.06 0000 --- --- --- --- 011711 00000 ------------ A 0.98 0.89 0.94 T 0.02 0.11 0.06 0000 --- --- --- --- 011783 00000 ------------ G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 012195 00000 ------------ G 0.69 0.98 0.83 A 0.31 0.02 0.17 0000 --- --- --- --- 012418 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012488 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 012736 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 012919 00000 ------------ G 0.83 0.98 0.90 A 0.17 0.02 0.10 0000 --- --- --- --- 012945 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 013081 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 013131 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013247 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013249 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013308 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 013403 00000 ------------ G 0.76 1.00 0.87 A 0.24 0.00 0.13 0000 --- --- --- --- 013493 00000 ------------ C 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 013508 00000 ------------ G 0.98 0.89 0.93 A 0.02 0.11 0.07 0000 --- --- --- --- 013599 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 013631 00000 ------------ T 0.89 0.61 0.74 C 0.11 0.39 0.26 0000 --- --- --- --- 013636 00000 ------------ G 0.84 1.00 0.92 A 0.16 0.00 0.08 0000 --- --- --- --- 013704 00000 ------------ A 0.63 1.00 0.82 G 0.37 0.00 0.18 0000 --- --- --- --- 013795 00000 ------------ A 0.98 0.89 0.94 G 0.02 0.11 0.06 0000 --- --- --- --- 014041 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 014043 00000 ------------ T 0.98 0.89 0.93 C 0.02 0.11 0.07 0000 --- --- --- --- 014061 00000 ------------ G 0.98 0.98 0.98 T 0.02 0.02 0.02 0000 --- --- --- --- 014089 00000 ------------ A 1.00 0.96 0.98 T 0.00 0.04 0.02 0000 --- --- --- --- 014203 00000 ------------ G 0.96 0.96 0.96 C 0.04 0.04 0.04 0000 --- --- --- --- 014517 00000 ------------ C 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 014582 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 014672 00000 ------------ A 0.65 0.83 0.73 G 0.35 0.17 0.27 0000 --- --- --- --- 014730 00000 ------------ A 0.65 0.83 0.73 G 0.35 0.17 0.27 0000 --- --- --- --- 015296 00000 ------------ A 0.54 0.57 0.56 T 0.46 0.43 0.44 0000 --- --- --- --- 015640 00000 ------------ C 0.75 0.95 0.84 A 0.25 0.05 0.16 0000 --- --- --- --- 015664 00000 ------------ C 0.44 0.72 0.57 T 0.56 0.28 0.43 0000 --- --- --- --- 015780 00000 ------------ G 0.73 0.78 0.76 T 0.27 0.22 0.24 0000 --- --- --- --- 016054 00000 ------------ T 0.73 0.78 0.76 A 0.27 0.22 0.24 0000 --- --- --- --- 016063 00000 ------------ - 0.04 0.00 0.02 + 0.96 1.00 0.98 0000 --- --- --- --- 016190 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016511 00000 ------------ C 0.98 0.96 0.97 T 0.02 0.04 0.03 0000 --- --- --- --- 016908 00000 ------------ T 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 017019 00000 ------------ A 0.44 0.72 0.57 G 0.56 0.28 0.43 0000 --- --- --- --- 017100 00000 ------------ C 0.73 0.78 0.76 A 0.27 0.22 0.24 0000 --- --- --- --- 017325 00000 ------------ T 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 017784 00000 ------------ T 0.41 0.72 0.57 C 0.59 0.28 0.43 0000 --- --- --- --- 017986 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 018269 00000 ------------ C 0.71 0.96 0.83 G 0.29 0.04 0.17 0000 --- --- --- --- 018303 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 018336 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 018713 00000 ------------ C 0.98 0.89 0.93 T 0.02 0.11 0.07 0000 --- --- --- --- 019208 00000 ------------ T 0.74 0.95 0.83 A 0.26 0.05 0.17 0000 --- --- --- --- 019262 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 019273 00000 ------------ T 0.89 1.00 0.94 C 0.11 0.00 0.06 0000 --- --- --- --- 019457 00000 ------------ G 1.00 0.97 0.99 A 0.00 0.03 0.01 0000 --- --- --- --- 019572 00000 ------------ C 0.89 0.87 0.88 A 0.11 0.13 0.12 0000 --- --- --- --- 019673 00000 ------------ T 0.44 0.67 0.55 C 0.56 0.33 0.45 0000 --- --- --- --- 019781 00000 ------------ C 1.00 0.96 0.98 T 0.00 0.04 0.02 0000 --- --- --- --- 019876 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 019909 00000 ------------ C 0.44 0.67 0.55 A 0.56 0.33 0.45 0000 --- --- --- --- 020126 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 020202 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 020210 00000 ------------ T 1.00 0.96 0.98 C 0.00 0.04 0.02 0000 --- --- --- --- 020243 00000 ------------ - 0.05 0.13 0.09 + 0.95 0.87 0.91 0000 --- --- --- --- 020715 00000 ------------ G 0.71 0.96 0.83 A 0.29 0.04 0.17 0000 --- --- --- --- 021012 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 021096 00000 ------------ T 0.98 0.89 0.93 A 0.02 0.11 0.07 0000 --- --- --- --- 021150 00000 ------------ C 0.80 1.00 0.90 T 0.20 0.00 0.10 0000 --- --- --- --- 021151 00000 ------------ G 0.95 0.96 0.96 A 0.05 0.04 0.04 0000 --- --- --- --- 021162 00000 ------------ T 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 021318 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 021352 00000 ------------ G 0.79 1.00 0.89 T 0.21 0.00 0.11 0000 --- --- --- --- 021382 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 021471 00000 ------------ G 0.98 0.93 0.96 T 0.02 0.07 0.04 0000 --- --- --- --- 021712 01193 NON-SYN A 0.96 1.00 0.98 G 0.04 0.00 0.02 0369 AAT GAT ASN(N) ASP(D) 021870 01351 3' UTR T 0.69 0.73 0.71 C 0.31 0.27 0.29 0000 --- --- --- --- 021986 01467 3' UTR T 1.00 0.89 0.94 C 0.00 0.11 0.06 0000 --- --- --- --- 022292 01773 3' UTR G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 022366 01847 3' UTR - 1.00 0.98 0.99 + 0.00 0.02 0.01 0000 --- --- --- --- 022653 02134 3' UTR C 0.52 0.59 0.55 A 0.48 0.41 0.45 0000 --- --- --- --- 022876 00000 ------------ - 0.52 0.59 0.55 + 0.48 0.41 0.45 0000 --- --- --- --- 023230 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 023370 00000 ------------ G 1.00 0.97 0.99 A 0.00 0.03 0.01 0000 --- --- --- --- 023404 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 023518 00000 ------------ A 1.00 0.97 0.99 G 0.00 0.03 0.01 0000 --- --- --- --- 023613 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 023728 00000 ------------ T 1.00 0.97 0.99 C 0.00 0.03 0.01 0000 --- --- --- --- 024070 00000 ------------ C 0.92 0.72 0.82 T 0.08 0.28 0.18 0000 --- --- --- --- 024147 00000 ------------ T 0.56 0.83 0.69 A 0.44 0.17 0.31 0000 --- --- --- --- 024330 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 024467 00000 ------------ T 0.73 0.52 0.63 C 0.27 0.48 0.37 0000 --- --- --- --- 024514 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 024703 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 003177: AG 009100: T 011196: TT 011313: T 016063: AGTTA 020243: T 022366: AGTT 022876: A