Site CDNA-Pos Description Allele1 AD-freq ED-freq HD-freq XD-freq Total-freq Allele2 AD-freq ED-freq HD-freq XD-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000665 00000 ------------ A 0.98 1.00 1.00 1.00 0.99 G 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 000695 00000 ------------ A 0.80 0.95 1.00 0.97 0.93 C 0.20 0.05 0.00 0.03 0.07 0000 --- --- --- --- 001336 00000 ------------ A 0.88 1.00 1.00 1.00 0.97 C 0.12 0.00 0.00 0.00 0.03 0000 --- --- --- --- 001398 00000 ------------ T 0.96 1.00 1.00 1.00 0.99 C 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 001463 00057 NON-SYN G 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.02 0.00 0.01 0019 CAG CAC GLN(Q) HIS(H) 001603 00197 NON-SYN G 0.98 1.00 1.00 1.00 0.99 C 0.02 0.00 0.00 0.00 0.01 0066 CGA CCA ARG(R) PRO(P) 002326 00000 ------------ T 0.38 0.64 0.79 0.97 0.73 C 0.62 0.36 0.21 0.03 0.27 0000 --- --- --- --- 002375 00000 ------------ G 0.93 1.00 1.00 1.00 0.98 A 0.07 0.00 0.00 0.00 0.02 0000 --- --- --- --- 002404 00000 ------------ T 0.13 0.47 0.66 0.98 0.55 C 0.87 0.53 0.34 0.02 0.45 0000 --- --- --- --- 084902 00000 ------------ C 0.08 0.81 0.85 1.00 0.69 T 0.92 0.19 0.15 0.00 0.31 0000 --- --- --- --- 085239 00000 ------------ T 0.73 1.00 1.00 1.00 0.93 C 0.27 0.00 0.00 0.00 0.07 0000 --- --- --- --- 085474 00000 ------------ C 1.00 1.00 0.95 1.00 0.99 T 0.00 0.00 0.05 0.00 0.01 0000 --- --- --- --- 085972 00000 ------------ G 0.98 1.00 1.00 1.00 0.99 T 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 086674 00000 ------------ C 0.98 1.00 1.00 1.00 0.99 T 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 086778 00000 ------------ C 0.93 1.00 1.00 1.00 0.98 T 0.07 0.00 0.00 0.00 0.02 0000 --- --- --- --- 093804 00000 ------------ A 0.98 1.00 1.00 1.00 0.99 G 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 093923 00000 ------------ G 0.91 1.00 1.00 1.00 0.98 A 0.09 0.00 0.00 0.00 0.02 0000 --- --- --- --- 094929 00000 ------------ T 1.00 1.00 1.00 0.95 0.99 A 0.00 0.00 0.00 0.05 0.01 0000 --- --- --- --- 096180 00000 ------------ G 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 097118 00000 ------------ G 1.00 1.00 0.95 1.00 0.99 A 0.00 0.00 0.05 0.00 0.01 0000 --- --- --- --- 097323 00000 ------------ A 0.97 0.93 0.95 1.00 0.96 C 0.03 0.07 0.05 0.00 0.04 0000 --- --- --- --- 098143 00000 ------------ T 1.00 1.00 0.98 1.00 0.99 C 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 098255 00000 ------------ G 1.00 0.98 1.00 1.00 0.99 A 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 098438 00000 ------------ A 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 108717 00000 ------------ C 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 108777 00000 ------------ G 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 109594 00000 ------------ T 0.95 1.00 1.00 1.00 0.99 G 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 109664 00000 ------------ C 0.16 0.71 0.85 1.00 0.70 A 0.84 0.29 0.15 0.00 0.30 0000 --- --- --- --- 109827 00000 ------------ - 0.07 0.00 0.02 0.00 0.02 + 0.93 1.00 0.98 1.00 0.98 0000 --- --- --- --- 109939 00000 ------------ T 1.00 1.00 0.97 1.00 0.99 G 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 109971 00000 ------------ C 0.90 1.00 1.00 1.00 0.98 T 0.10 0.00 0.00 0.00 0.02 0000 --- --- --- --- 110521 00000 ------------ T 0.98 1.00 1.00 1.00 0.99 C 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 110557 00000 ------------ A 0.98 0.92 0.95 1.00 0.96 G 0.02 0.08 0.05 0.00 0.04 0000 --- --- --- --- 110623 00000 ------------ C 1.00 1.00 1.00 0.93 0.98 G 0.00 0.00 0.00 0.07 0.02 0000 --- --- --- --- 251203 00000 ------------ - 1.00 1.00 1.00 0.95 0.99 + 0.00 0.00 0.00 0.05 0.01 0000 --- --- --- --- 251239 00000 ------------ T 0.19 0.63 0.75 1.00 0.65 A 0.81 0.37 0.25 0.00 0.35 0000 --- --- --- --- 252319 00000 ------------ G 0.93 1.00 1.00 1.00 0.98 A 0.07 0.00 0.00 0.00 0.02 0000 --- --- --- --- 252412 00000 ------------ C 0.98 0.90 0.94 1.00 0.95 A 0.02 0.10 0.06 0.00 0.05 0000 --- --- --- --- 252460 00000 ------------ C 0.98 0.95 0.97 1.00 0.97 A 0.02 0.05 0.03 0.00 0.03 0000 --- --- --- --- 252713 00000 ------------ A 1.00 0.98 1.00 1.00 0.99 G 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 252925 00000 ------------ G 0.82 0.93 0.95 1.00 0.93 T 0.17 0.07 0.05 0.00 0.07 0000 --- --- --- --- 267275 00000 ------------ - 0.84 1.00 1.00 1.00 0.96 + 0.16 0.00 0.00 0.00 0.04 0000 --- --- --- --- 267425 00000 ------------ A 0.81 0.79 0.93 1.00 0.88 C 0.19 0.21 0.07 0.00 0.12 0000 --- --- --- --- 267441 00000 ------------ G 1.00 1.00 0.98 1.00 0.99 A 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 267601 00000 ------------ A 0.98 1.00 1.00 1.00 0.99 G 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 267679 00000 ------------ C 0.98 0.94 1.00 1.00 0.98 T 0.02 0.06 0.00 0.00 0.02 0000 --- --- --- --- 267822 00000 ------------ G 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 268016 00000 ------------ C 0.98 1.00 1.00 1.00 0.99 T 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 268151 00000 ------------ T 0.95 0.88 0.93 1.00 0.94 G 0.05 0.12 0.07 0.00 0.06 0000 --- --- --- --- 268621 00000 ------------ - 0.02 0.00 0.00 0.00 0.01 + 0.98 1.00 1.00 1.00 0.99 0000 --- --- --- --- 268652 00000 ------------ T 0.71 0.92 0.93 1.00 0.89 C 0.29 0.08 0.07 0.00 0.11 0000 --- --- --- --- 268733 00000 ------------ G 0.61 0.92 0.93 1.00 0.87 C 0.39 0.08 0.07 0.00 0.13 0000 --- --- --- --- 269514 00000 ------------ G 0.96 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 269797 00000 ------------ C 0.94 1.00 0.95 0.98 0.97 T 0.06 0.00 0.05 0.02 0.03 0000 --- --- --- --- 311796 00000 ------------ A 0.98 1.00 1.00 1.00 0.99 T 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 311859 00000 ------------ C 0.96 0.85 0.95 1.00 0.94 T 0.04 0.15 0.05 0.00 0.06 0000 --- --- --- --- 311894 00000 ------------ A 0.96 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 313459 00000 ------------ T 0.91 1.00 1.00 1.00 0.98 G 0.09 0.00 0.00 0.00 0.02 0000 --- --- --- --- 313651 00000 ------------ T 0.96 1.00 1.00 1.00 0.99 G 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 313791 00000 ------------ G 0.92 1.00 1.00 1.00 0.98 A 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 313953 00000 ------------ T 0.71 0.92 0.93 1.00 0.89 C 0.29 0.08 0.07 0.00 0.11 0000 --- --- --- --- 314376 01356 NON-SYN A 0.93 1.00 1.00 1.00 0.98 C 0.07 0.00 0.00 0.00 0.02 0452 GAA GAC GLU(E) ASP(D) 314527 00000 ------------ G 0.98 1.00 1.00 1.00 0.99 A 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 314552 00000 ------------ T 1.00 0.98 1.00 1.00 0.99 C 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 314972 00000 ------------ A 1.00 1.00 1.00 0.96 0.99 G 0.00 0.00 0.00 0.04 0.01 0000 --- --- --- --- 326467 00000 ------------ G 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 326946 00000 ------------ - 0.15 0.76 0.82 1.00 0.69 + 0.85 0.24 0.18 0.00 0.31 0000 --- --- --- --- 327046 00000 ------------ T 0.98 1.00 1.00 1.00 0.99 A 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 327551 00000 ------------ T 0.98 1.00 1.00 1.00 0.99 C 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 327555 00000 ------------ C 1.00 0.98 1.00 1.00 0.99 G 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 328404 00000 ------------ T 1.00 1.00 0.97 1.00 0.99 A 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 328732 00000 ------------ T 0.61 0.93 1.00 1.00 0.86 C 0.39 0.07 0.00 0.00 0.14 0000 --- --- --- --- 329829 00000 ------------ T 1.00 1.00 1.00 0.98 0.99 C 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 330967 00000 ------------ C 1.00 1.00 1.00 0.97 0.99 T 0.00 0.00 0.00 0.03 0.01 0000 --- --- --- --- 331727 00000 ------------ G 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 331975 00000 ------------ T 0.98 1.00 1.00 1.00 0.99 G 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 332154 00000 ------------ C 0.98 1.00 1.00 1.00 0.99 T 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 332170 00000 ------------ A 1.00 0.98 1.00 1.00 0.99 G 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 332215 00000 ------------ T 0.54 0.79 0.89 1.00 0.80 G 0.46 0.21 0.11 0.00 0.20 0000 --- --- --- --- 332962 00000 ------------ G 1.00 1.00 0.97 1.00 0.99 A 0.00 0.00 0.03 0.00 0.01 0000 --- --- --- --- 333956 00000 ------------ T 1.00 0.97 1.00 1.00 0.99 C 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 334886 00000 ------------ - 0.90 0.28 0.18 0.00 0.34 + 0.10 0.72 0.82 1.00 0.66 0000 --- --- --- --- 335149 01812 SYNON G 0.91 1.00 1.00 1.00 0.98 T 0.09 0.00 0.00 0.00 0.02 0604 CGG CGT ARG(R) ARG(R) 335239 00000 ------------ C 1.00 1.00 1.00 0.97 0.99 G 0.00 0.00 0.00 0.03 0.01 0000 --- --- --- --- 335340 00000 ------------ T 0.97 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 335624 00000 ------------ A 0.96 1.00 0.97 1.00 0.98 T 0.04 0.00 0.03 0.00 0.02 0000 --- --- --- --- 335633 00000 ------------ T 0.92 1.00 1.00 1.00 0.98 A 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 346221 00000 ------------ G 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 346316 00000 ------------ A 0.95 1.00 0.97 1.00 0.98 G 0.05 0.00 0.03 0.00 0.02 0000 --- --- --- --- 346350 00000 ------------ G 0.97 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 346573 00000 ------------ A 0.66 0.92 0.95 1.00 0.89 G 0.34 0.08 0.05 0.00 0.11 0000 --- --- --- --- 346726 00000 ------------ C 0.98 1.00 1.00 1.00 0.99 T 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 346806 01902 SYNON T 0.16 0.72 0.81 1.00 0.68 C 0.84 0.28 0.19 0.00 0.32 0634 GTT GTC VAL(V) VAL(V) 346896 01992 SYNON A 0.93 1.00 1.00 1.00 0.98 T 0.07 0.00 0.00 0.00 0.02 0664 ACA ACT THR(T) THR(T) 347043 00000 ------------ G 1.00 1.00 0.96 0.98 0.99 C 0.00 0.00 0.04 0.02 0.01 0000 --- --- --- --- 347416 00000 ------------ G 0.96 1.00 1.00 1.00 0.99 A 0.04 0.00 0.00 0.00 0.01 0000 --- --- --- --- 347547 00000 ------------ - 0.00 0.00 0.05 0.00 0.01 + 1.00 1.00 0.95 1.00 0.99 0000 --- --- --- --- 347569 00000 ------------ G 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 347606 00000 ------------ C 0.96 1.00 0.98 1.00 0.98 T 0.04 0.00 0.02 0.00 0.02 0000 --- --- --- --- 360857 00000 ------------ G 0.97 1.00 1.00 1.00 0.99 A 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 361145 00000 ------------ T 0.62 0.86 0.83 0.95 0.83 C 0.38 0.14 0.17 0.05 0.17 0000 --- --- --- --- 361567 00000 ------------ T 0.65 0.92 0.95 1.00 0.88 G 0.35 0.08 0.05 0.00 0.12 0000 --- --- --- --- 362012 00000 ------------ G 0.84 1.00 1.00 1.00 0.96 C 0.16 0.00 0.00 0.00 0.04 0000 --- --- --- --- 363038 00000 ------------ G 1.00 1.00 1.00 0.98 0.99 A 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 447460 00000 ------------ T 0.95 1.00 1.00 1.00 0.99 C 0.05 0.00 0.00 0.00 0.01 0000 --- --- --- --- 448334 00000 ------------ T 0.52 0.85 0.83 1.00 0.80 C 0.48 0.15 0.17 0.00 0.20 0000 --- --- --- --- 448876 00000 ------------ T 0.97 1.00 1.00 1.00 0.99 C 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 448958 00000 ------------ T 1.00 0.98 1.00 1.00 0.99 A 0.00 0.02 0.00 0.00 0.01 0000 --- --- --- --- 448977 00000 ------------ A 0.97 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 493034 00000 ------------ A 0.97 1.00 1.00 1.00 0.99 T 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 642559 00000 ------------ G 0.98 1.00 1.00 1.00 0.99 A 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 642843 00000 ------------ T 0.98 1.00 1.00 1.00 0.99 A 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 643187 00000 ------------ T 0.80 1.00 0.94 1.00 0.94 C 0.20 0.00 0.06 0.00 0.06 0000 --- --- --- --- 643519 00000 ------------ C 0.98 1.00 1.00 1.00 0.99 T 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 643677 00000 ------------ G 0.94 0.76 0.76 0.98 0.86 A 0.06 0.24 0.24 0.02 0.14 0000 --- --- --- --- 643694 00000 ------------ C 1.00 1.00 1.00 0.98 0.99 T 0.00 0.00 0.00 0.02 0.01 0000 --- --- --- --- 646887 00000 ------------ C 0.80 1.00 0.90 1.00 0.93 A 0.20 0.00 0.10 0.00 0.07 0000 --- --- --- --- 647414 00000 ------------ T 0.93 1.00 1.00 1.00 0.98 C 0.07 0.00 0.00 0.00 0.02 0000 --- --- --- --- 647417 00000 ------------ A 0.57 0.60 0.72 0.98 0.72 G 0.43 0.40 0.28 0.02 0.28 0000 --- --- --- --- 647790 00000 ------------ A 0.97 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 648467 02918 3' UTR A 0.95 0.87 0.91 1.00 0.93 G 0.05 0.13 0.09 0.00 0.07 0000 --- --- --- --- 648565 03016 3' UTR C 0.98 1.00 1.00 1.00 0.99 A 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 648847 03298 3' UTR T 0.26 0.60 0.61 0.98 0.62 C 0.74 0.40 0.39 0.02 0.38 0000 --- --- --- --- 648853 03304 3' UTR T 0.48 0.60 0.70 0.98 0.69 A 0.52 0.40 0.30 0.02 0.31 0000 --- --- --- --- 648996 03447 3' UTR A 0.98 1.00 1.00 1.00 0.99 G 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- 649015 03466 3' UTR T 0.65 0.85 0.89 1.00 0.85 C 0.35 0.15 0.11 0.00 0.15 0000 --- --- --- --- 649039 03490 3' UTR - 0.48 0.60 0.75 0.98 0.71 + 0.52 0.40 0.25 0.02 0.29 0000 --- --- --- --- 649584 04035 3' UTR G 0.94 0.68 0.82 0.98 0.87 T 0.06 0.32 0.18 0.02 0.13 0000 --- --- --- --- 649614 04065 3' UTR G 1.00 0.97 1.00 1.00 0.99 A 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 649674 04125 3' UTR G 0.74 0.66 0.81 0.98 0.81 C 0.26 0.34 0.19 0.02 0.19 0000 --- --- --- --- 650328 04779 3' UTR A 1.00 1.00 0.98 1.00 0.99 G 0.00 0.00 0.02 0.00 0.01 0000 --- --- --- --- 650690 05141 3' UTR A 0.97 1.00 1.00 1.00 0.99 G 0.03 0.00 0.00 0.00 0.01 0000 --- --- --- --- 650755 05206 3' UTR C 0.97 0.94 1.00 1.00 0.98 G 0.03 0.06 0.00 0.00 0.02 0000 --- --- --- --- 650834 05285 3' UTR A 0.95 0.82 0.81 1.00 0.90 G 0.05 0.17 0.19 0.00 0.10 0000 --- --- --- --- 650924 05375 3' UTR A 0.93 1.00 1.00 1.00 0.98 G 0.07 0.00 0.00 0.00 0.02 0000 --- --- --- --- 651112 05563 3' UTR C 0.92 1.00 1.00 1.00 0.98 T 0.08 0.00 0.00 0.00 0.02 0000 --- --- --- --- 651282 05733 3' UTR T 1.00 0.97 1.00 1.00 0.99 C 0.00 0.03 0.00 0.00 0.01 0000 --- --- --- --- 651688 00000 ------------ A 0.43 0.53 0.75 1.00 0.69 G 0.57 0.47 0.25 0.00 0.31 0000 --- --- --- --- 651872 00000 ------------ A 0.31 0.60 0.66 0.98 0.64 G 0.69 0.40 0.34 0.02 0.36 0000 --- --- --- --- 652108 00000 ------------ A 1.00 1.00 0.91 1.00 0.98 G 0.00 0.00 0.09 0.00 0.02 0000 --- --- --- --- 652270 00000 ------------ G 0.94 1.00 1.00 1.00 0.98 A 0.06 0.00 0.00 0.00 0.02 0000 --- --- --- --- 652404 00000 ------------ C 0.89 1.00 0.95 1.00 0.96 G 0.11 0.00 0.05 0.00 0.04 0000 --- --- --- --- 652428 00000 ------------ C 0.96 0.75 0.82 1.00 0.88 T 0.04 0.25 0.18 0.00 0.12 0000 --- --- --- --- 652446 00000 ------------ T 0.98 1.00 1.00 1.00 0.99 C 0.02 0.00 0.00 0.00 0.01 0000 --- --- --- --- NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 109827: AGCAAGAT 251203: T 267275: T 268621: C 326946: AT 334886: A 347547: T 649039: TA