Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000338 00000 ------------ G 0.52 0.72 0.62 A 0.48 0.28 0.38 0000 --- --- --- --- 000339 00000 ------------ A 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 000483 00000 ------------ C 0.46 0.72 0.59 T 0.54 0.28 0.41 0000 --- --- --- --- 001121 00000 ------------ A 0.39 0.89 0.66 G 0.61 0.11 0.34 0000 --- --- --- --- 001926 00084 SYNON C 0.71 0.98 0.84 T 0.29 0.02 0.16 0028 TTC TTT PHE(F) PHE(F) 002713 00000 ------------ G 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 002976 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 003051 00000 ------------ A 0.70 0.95 0.83 C 0.30 0.05 0.17 0000 --- --- --- --- 003406 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 003874 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 003915 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 004129 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 004138 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 005466 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 006297 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 006364 00000 ------------ G 0.84 0.48 0.66 A 0.16 0.52 0.34 0000 --- --- --- --- 007025 00000 ------------ C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 007242 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 008395 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 008477 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 008667 00000 ------------ C 0.93 1.00 0.96 A 0.07 0.00 0.04 0000 --- --- --- --- 009100 00000 ------------ C 0.87 1.00 0.93 G 0.13 0.00 0.07 0000 --- --- --- --- 009107 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 009134 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 009184 00000 ------------ - 0.15 0.02 0.09 + 0.85 0.98 0.91 0000 --- --- --- --- 009211 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 009629 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 009755 00000 ------------ G 0.93 1.00 0.96 A 0.07 0.00 0.04 0000 --- --- --- --- 009914 00000 ------------ T 0.85 0.95 0.90 G 0.15 0.05 0.10 0000 --- --- --- --- 010262 00000 ------------ A 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 010289 00700 NON-SYN G 0.96 1.00 0.98 A 0.04 0.00 0.02 0234 GAG AAG GLU(E) LYS(K) 010298 00709 SYNON T 0.96 1.00 0.98 C 0.04 0.00 0.02 0237 TTG CTG LEU(L) LEU(L) 010792 00000 ------------ T 0.40 0.96 0.67 C 0.60 0.04 0.33 0000 --- --- --- --- 010793 00000 ------------ C 0.40 0.96 0.67 T 0.60 0.04 0.33 0000 --- --- --- --- 010843 00000 ------------ - 0.83 0.96 0.89 + 0.17 0.04 0.11 0000 --- --- --- --- 010885 00000 ------------ T 0.26 0.96 0.61 C 0.74 0.04 0.39 0000 --- --- --- --- 011009 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 011010 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 011099 00000 ------------ - 0.38 0.96 0.66 + 0.62 0.04 0.34 0000 --- --- --- --- 011274 00000 ------------ T 0.26 0.93 0.60 C 0.74 0.07 0.40 0000 --- --- --- --- 011422 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 011641 00000 ------------ C 0.28 0.93 0.63 G 0.72 0.07 0.37 0000 --- --- --- --- 011705 00000 ------------ T 0.28 0.93 0.63 C 0.72 0.07 0.37 0000 --- --- --- --- 011738 00000 ------------ G 0.28 0.96 0.64 C 0.72 0.04 0.36 0000 --- --- --- --- 011791 00000 ------------ G 0.26 0.96 0.64 C 0.74 0.04 0.36 0000 --- --- --- --- 012023 00000 ------------ T 0.69 1.00 0.85 C 0.31 0.00 0.15 0000 --- --- --- --- 012058 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 012083 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 012131 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 012173 00000 ------------ C 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 012300 00000 ------------ A 0.25 0.91 0.59 G 0.75 0.09 0.41 0000 --- --- --- --- 012384 00000 ------------ C 0.73 1.00 0.86 T 0.27 0.00 0.14 0000 --- --- --- --- 012432 00000 ------------ - 0.43 0.02 0.23 + 0.57 0.98 0.77 0000 --- --- --- --- 012749 00000 ------------ G 0.52 0.76 0.64 A 0.48 0.24 0.36 0000 --- --- --- --- 012777 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 012780* 012800 00000 ------------ A 0.91 1.00 0.96 C 0.09 0.00 0.04 0000 --- --- --- --- 012809 00000 ------------ T 0.75 0.96 0.86 C 0.25 0.04 0.14 0000 --- --- --- --- 012818 00000 ------------ A 0.91 1.00 0.96 G 0.09 0.00 0.04 0000 --- --- --- --- 012824 00000 ------------ - 0.41 0.07 0.23 + 0.59 0.93 0.77 0000 --- --- --- --- 012837 00000 ------------ T 0.87 1.00 0.93 C 0.13 0.00 0.07 0000 --- --- --- --- 012838 00000 ------------ G 0.91 1.00 0.96 A 0.09 0.00 0.04 0000 --- --- --- --- 012982 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 013314 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013315 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 013343 00000 ------------ C 0.70 0.98 0.84 T 0.30 0.02 0.16 0000 --- --- --- --- 013373 00000 ------------ C 0.70 1.00 0.85 T 0.30 0.00 0.15 0000 --- --- --- --- 013403 00000 ------------ C 0.67 0.98 0.82 T 0.33 0.02 0.18 0000 --- --- --- --- 013525 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 013651 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 013726 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 013773 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 015488 00000 ------------ - 0.00 0.07 0.03 + 1.00 0.93 0.97 0000 --- --- --- --- 015560 00000 ------------ C 0.70 0.98 0.83 T 0.30 0.02 0.17 0000 --- --- --- --- 015598 00000 ------------ - 0.30 0.02 0.17 + 0.70 0.98 0.83 0000 --- --- --- --- 020070 00000 ------------ C 0.89 1.00 0.94 T 0.11 0.00 0.06 0000 --- --- --- --- 020174 00000 ------------ T 0.68 0.98 0.83 G 0.32 0.02 0.17 0000 --- --- --- --- 020325 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 020406 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 020682 00000 ------------ A 0.89 1.00 0.94 G 0.11 0.00 0.06 0000 --- --- --- --- 020824 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 020989 00000 ------------ - 0.07 0.00 0.03 + 0.93 1.00 0.97 0000 --- --- --- --- 021057 00000 ------------ A 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 021199 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 021370 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 021436 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 021525 00000 ------------ T 0.62 0.98 0.80 C 0.38 0.02 0.20 0000 --- --- --- --- 021579 00000 ------------ T 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 021584 00000 ------------ T 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 021587 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 021827 00000 ------------ T 0.64 0.98 0.82 C 0.36 0.02 0.18 0000 --- --- --- --- 021903 00000 ------------ - 0.94 1.00 0.97 + 0.06 0.00 0.03 0000 --- --- --- --- 021927 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 021988 00000 ------------ C 0.87 1.00 0.93 A 0.13 0.00 0.07 0000 --- --- --- --- 022021 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 022191 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 022192 00000 ------------ A 0.63 0.98 0.80 G 0.37 0.02 0.20 0000 --- --- --- --- 022498 00000 ------------ A 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 022652 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 023085 00000 ------------ G 1.00 0.97 0.99 A 0.00 0.03 0.01 0000 --- --- --- --- 023149 00000 ------------ A 0.50 0.95 0.73 G 0.50 0.05 0.27 0000 --- --- --- --- 023167 00000 ------------ G 1.00 0.95 0.97 A 0.00 0.05 0.03 0000 --- --- --- --- 023184 00000 ------------ - 0.29 0.03 0.15 + 0.71 0.97 0.85 0000 --- --- --- --- 023724 00000 ------------ C 0.98 0.95 0.97 T 0.02 0.05 0.03 0000 --- --- --- --- 024678 00000 ------------ C 0.67 0.97 0.80 T 0.33 0.03 0.20 0000 --- --- --- --- 025237 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 025753 00000 ------------ - 0.33 0.02 0.17 + 0.67 0.98 0.83 0000 --- --- --- --- 026349 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 026452 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 026470 00000 ------------ C 0.70 0.98 0.84 G 0.30 0.02 0.16 0000 --- --- --- --- 026630 00000 ------------ - 0.71 0.97 0.84 + 0.29 0.03 0.16 0000 --- --- --- --- 027056 00000 ------------ T 0.90 1.00 0.94 C 0.10 0.00 0.06 0000 --- --- --- --- 027215 00000 ------------ T 0.88 1.00 0.93 C 0.12 0.00 0.07 0000 --- --- --- --- 027656 00000 ------------ - 0.14 0.00 0.07 + 0.86 1.00 0.93 0000 --- --- --- --- 027796 00000 ------------ A 0.89 1.00 0.94 G 0.11 0.00 0.06 0000 --- --- --- --- 028899 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 028931* 029012 00000 ------------ C 1.00 0.95 0.98 T 0.00 0.05 0.02 0000 --- --- --- --- 029013 00000 ------------ G 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 029492 00000 ------------ C 0.92 0.78 0.85 T 0.08 0.22 0.15 0000 --- --- --- --- 029667 00000 ------------ G 0.64 0.98 0.81 A 0.36 0.02 0.19 0000 --- --- --- --- 029916 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 030167 00000 ------------ C 0.67 0.98 0.82 G 0.33 0.02 0.18 0000 --- --- --- --- 030318 00000 ------------ T 0.74 0.98 0.86 C 0.26 0.02 0.14 0000 --- --- --- --- 030421 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 031493 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 031632 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 032836 00000 ------------ T 0.74 1.00 0.89 C 0.26 0.00 0.11 0000 --- --- --- --- 033084 00000 ------------ G 0.97 0.89 0.93 A 0.03 0.11 0.07 0000 --- --- --- --- 033250 00000 ------------ T 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 033371 00000 ------------ T 0.42 0.98 0.73 C 0.58 0.02 0.27 0000 --- --- --- --- 033703 00000 ------------ G 0.73 0.98 0.89 A 0.27 0.02 0.11 0000 --- --- --- --- 033925 00000 ------------ A 0.86 1.00 0.93 G 0.14 0.00 0.07 0000 --- --- --- --- 034159 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 034208 00000 ------------ T 0.85 1.00 0.92 C 0.15 0.00 0.08 0000 --- --- --- --- 034537 00000 ------------ G 0.98 0.95 0.97 T 0.02 0.05 0.03 0000 --- --- --- --- 034731 00000 ------------ - 0.05 0.00 0.02 + 0.95 1.00 0.98 0000 --- --- --- --- 034816 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 034891 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 034909 00000 ------------ A 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 035139 00000 ------------ T 0.91 1.00 0.96 C 0.09 0.00 0.04 0000 --- --- --- --- 035446 00000 ------------ C 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 035654 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 035655 00000 ------------ A 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 036733 00000 ------------ - 0.07 0.00 0.03 + 0.93 1.00 0.97 0000 --- --- --- --- 036752 00000 ------------ C 0.84 0.45 0.65 T 0.16 0.55 0.35 0000 --- --- --- --- 036852 00000 ------------ C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 037972 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 038475 02122 3' UTR T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 038966 02613 3' UTR G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 038967 02614 3' UTR A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 039196 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 039253 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 039308 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 039437 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 039743 00000 ------------ G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 039756 00000 ------------ G 0.88 0.89 0.88 C 0.12 0.11 0.12 0000 --- --- --- --- 039788 00000 ------------ T 0.93 1.00 0.97 G 0.07 0.00 0.03 0000 --- --- --- --- 040077 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 040322 00000 ------------ C 0.61 0.98 0.79 T 0.39 0.02 0.21 0000 --- --- --- --- 040638 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 009184: CTC 010843: TA 011099: AGAAAGTATTT 012432: G 012824: C 015488: ACAA 015598: A 020989: T 021903: GTTTTGTTTT 023184: TGAATGAGAC 025753: GGATTACAGGCGTG 026630: T 027656: AG 029916: CT 034731: CA 036733: AGG The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 012780 C 0.48 0.98 0.73 G 0.36 0.02 0.19 T 0.17 0.00 0.08 028931 C 0.07 0.00 0.03 G 0.11 0.00 0.05 T 0.83 1.00 0.91