PTGDS Color FASTA

The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.

*Display courtesy of GeneSNPs

GCTTTCTGCA GCCCACTAGA AAATGGGGAA GAGGAGGGGC TTGGTCCCTG 50 TTCCAGGCAC TGGGTTTGAG GGCTGGACAC CCGAGATCCC TGGGAACCCC 100 TCTGGCTATG GGAGGACCTG GCCCCATCAG ACTTCAGAGT CTCTCCCTGG 150 | var(119):[C:0.37] | var(142):[C:0.38] CAGGTGACCC AGGCCTGCCC AGACGGAAGC CATTCAGACC CAGAGCCACG 200 TGTCCTGGGT CTCCCTGCCC CGGGCCACCC GCCACCACAC CCCAGAGCTT 250 GCTCACCACC GGGAGGCGCT CTTGTCCTGG ACCAGCCTAG CCTGGGTTGG 300 GACCTCCAGC CAGGCCAGTC AGCGAGCCAC CAGCCCCACC AGAGTGGAAT 350 GACAGCCAGG ACTCAGCTGG CAGCGGGCAG GAGGCCAGTC TTGTGGTGAT 400 | var(375):[A:0.01] ATCCCAGCCG CAACTCTCTT CCTGCCCCTC CCCTGTCCTG ACGGCAGCCC 450 | var(411):[T:0.02] CCAGCTCTGT AGCTGAGCCA GGCTTGCGGG CCACGCGGGG TCCCGGGTTT 500 | var(474):[C:0.21] AGGCACCCCA CCCCTATCTG TTCCAACAGA CTCTCCCTCT CAGCCCATGG 550 CACAGATGGC ATCTGAGCTA GCAGCACGCT GCTGCTTCAG GCAGGGGTTG 600 ATAGGAGGTC CAGGTGGAGG AGTGGGTTCT CAGGACTGCC TTGGCCCCCC 650 | var(646):[T:0.01] TGCACCGCTG CCCTCCTTCT CCCTGCCTCT CAGGTGCCTC CCGGCTCCCT 700 GGGACTCACT CCCTCACCTT GGCCTCTGCC TGGGATGCTA CCCGGCCACC 750 | var(739):[C:0.22] CCCACCAGCC CTGACACCAG TGCTGCCCAC TAGCCCCTGC TGCTACATAG 800 GCATGCGCCT CCCCCAGTCT GGGCTCCTTG ACCCCCGGGC ACTGGGGAAG 850 GGGAACAAGG AAGCAGTCCA CACCAGCCCA CTCCCAGGGC TCGTGCGCCC 900 CCAGCAAGGG ATGGGCCACA GAATCCAGGA AGAAGACGGG CTCCGGCCCC 950 CAGTGGTCGC CAGCAGCCCC GTAGAAGCTC ACCACCCCAC CCCATCCGAC 1000 | var(970):[T:0.01] TCACTCCTGC TCTCATGTAC ATTTCCCAGC TCCCCACCCG GGCTCACCTT 1050 | var(1032):[T:0.01] CAGACCAGCG GCAGCGCTCA CCCACCACGC CTGCCAGGGA AGCTCAGTCC 1100 CAACAGAATC CAGAGAGGGC CCACCACATG TGCCTGCCTG TGACGGCCTG 1150 TGACAGGGCC CCAGCCAGGG CCAACGAGCT GGAGGGGCCC AAGGAGCTGG 1200 GTGCAGCGCT GGGGTAACAG GACAGCCCCA CGGGGTGCTC CCGAGTCTGG 1250 ACCAGACTCG GGGTGGGGAG GCCCAGACTC GGCGGGGGGC AGACTTGGGG 1300 TGGGGGGATT GCTGGGGGAA GTTGGGGCCT CTGGCAAGGG ATAGGGCCTG 1350 TGCTCAAGCC CAAAGGTGCC CCAGGCTGAA ATGGGCACCC AGGGGTCACT 1400 ATCAGAGCCC CAACAGCTGG CCATGGGGGA AGCCATGCCC AGCAAACCTG 1450 GCCCTCGGGA CCCTGCGGGC CAGATCAAGT TTCTCTACCT TGGCCTGAGC 1500 TTCTCATCAA CACTTCACTT GCTGGGCGTT TCAGGACCAA ACTCTCAGGG 1550 | var(1527):[T:0.01] TGGAAGTGGG GCTTGTGTCC CCTTCTGGGG TGGCAGGGCT CGGAAAGGGA 1600 ATGATGGTAG GGGCTGTGAG ATGTGGGTCC TGGCCCCCAG TGGGAAGTCA 1650 CCAGAGGCCT CGGAGGCGGG CATGGCTGAG GAACACAGCC CCTGCCCTAT 1700 | var(1680):[A:0.05] CAGGGCCGCT GGGTTGGTGG GCCCTGCCAG CAGGAGGAGG GTGGGCAAGG 1750 TCCCTGCCAG CTCTGTCTCT GGGACCAGTG GGCAGGGGCC TCTGCCTCAC 1800 CCCCACGCTG CCTCAGCTGG GGCAGCAGGC CCAGGCCTCT TGCATAAGCG 1850 CCCTGTGGGG GACGAGGCTG CAGCTGTGCC TGGCCACCCC ATCCCCCAGC 1900 ATCACGAGTG TTCAGTGGGC TGTCCCCGGG CCCTGGGTGG AGGCCAAGCC 1950 TGGCCCATAA ATAGGGGTCT CCTCAGTGCC CTCCGCTCCT CCTGCACACC 2000 | Exon 1 | UTR TCCCTCGCTC TCCCACACCA CTGGCACCAG GCCCCGGACA CCCGCTCTGC 2050 TGCAGGAGAA TGGCTACTCA TCACACGCTG TGGATGGGAC TGGCCCTGCT 2100 | var(2077):[A:0.13] M A T H H T L W M G L A L L 14 GGGGGTGCTG GGCGACCTGC AGGCAGCACC GGAGGCCCAG GTCTCCGTGC 2150 G V L G D L Q A A P E A Q V S V 30 AGCCCAACTT CCAGCAGGAC AAGGTGAGGG GCTTTCCTGC GTCATCCCCA 2200 Q P N F Q Q D K 38 AGGGCTACAG GACCCTGTCA GGGGAAGGGC ACTTTCCGGC TGGGTCTTCC 2250 CCCTGGGAGG AGTGAGCGAA GTCCCGCAGT GCCGGGCAGT GCCGGCCAGG 2300 | var(2280):[A:0.01] GACTGAGCGG GCGCGCAGGA AGGAGGCTGG GTAGCCGCCC GAGGAGGCTG 2350 | var(2330):[:0.21] | var(2336):[T:0.01] CCCGCGAGAA GCCCTCCCTG GGCACCGCGT CCCGTCTCCC CTGATGGGCC 2400 ACGCAGACAC CGGGCCACAC ACGCGCCCAC GCCAGCCAGA CACGTCCACC 2450 | var(2404):[G:0.07] CCTGTGGGCA CGCGACCCCC AGAGGACACA CGAGCGCACG TTCCACACCT 2500 GGGTGCCAGG ACACGGGCGG GTGGGGCACA GGGATGGCGA CAAACACTCC 2550 | NOT SCANNED GTGCGCGGTG GGGGTTGGGA GGGACGCGCA CCGCACAGAC AGCCGGCGAC 2600 GCGCGCTCTC GCCCGGGAGC TGCTCGGGGA AGCGCCGGAG CGCGGGTCCC 2650 CGCGCCGCGC GCCCCTCCCT GGCGTCGAGG AGAACCCCAG CGGTCCGCAG 2700 AGCTGAGCCG AAGACCCGCC CCGATCCCCG CCAGGAATGC GACGTCCTCT 2750 GCCGCCCGCT GTATGGGCCA GGCGCTCAGC CAGGGCACAG AATCGGGACC 2800 GGGGGCGGAG GGGCCGAAGC TGGCTGGTGG GCGGCGTGCG AGGGTGAGGG 2850 ACTGTCCTCG GGAGGGGCGT GGCCAGACGG GGGTGCTGGG TGTCAGGGGC 2900 GTGGCCAGCT TCTGGGGCTG AGGCGTGAGG GGCGGGGCCA TCTCCGGGGG 2950 AGGGGGAAGT GGGGCGTGGT CATCTCCTGG GGCGGGGCGT GAGGGGCGGG 3000 GCCACCTCCC GGGGCGGGGC GGGGGCCTGA TGGGCGTGGT CAGCTCCTGG 3050 GGCGGGGACG TGAGGGGCGG GGTCAGCTCC TAGGGGGGCA TGGGGCGTGA 3100 GGGGCGCGGT CAGTTCCCTG GTTGTGGACA TGAAGGGCGG GGCCAGCTCT 3150 TGGGGCGGGG TCGTGAGGGG CGTGGTCAGC TCCTGGGGCG GGGATGTGAG 3200 GGGCGGGGTC ATCTCCTGGG GCGGGGATGT GAGGGGCGTG GTCAGCTCCT 3250 GGGGCGGAGA TGTGAGGGGC GGGGTCATCT CCTGGGGCGG GGATTGAGGG 3300 GCGGGGGTCA GTTCCTGGGG CGGGGCGTGA GGGGCGTGGC TGCTCGGGGG 3350 ATTGGGCGTG GGGGCGGGGC CGGGTTGGAG ACCGGAGGAG TAGACGGCAG 3400 AGGCGCCCCC GCAGGTAGGC GCAGGTGGGT CCGGAGGGTC CTGGCCGACG 3450 CGGGTGGGGG TCGCTCGCCG CAGTTCCTGG GGCGCTGGTT CAGCGCGGGC 3500 | var(3465):[C:0.08] | var(3466):[T:0.08] | Exon 2 F L G R W F S A G 47 CTCGCCTCCA ACTCGAGCTG GCTCCGGGAG AAGAAGGCGG CGTTGTCCAT 3550 L A S N S S W L R E K K A A L S M 64 GTGCAAGTCT GTGGTGGCCC CTGCCACGGA TGGTGGCCTC AACCTGACCT 3600 C K S V V A P A T D G G L N L T 80 CCACCTTCCT CAGGTGGGAC AGCGGGCAGG TGGGTTTCTG GGACGGAGAG 3650 S T F L R 85 GTCCAGGGAC ACCCTCGGGC CTAACCCCTG ACCCTGAGGT CACCCACCTA 3700 CAGGAAAAAC CAGTGTGAGA CCCGAACCAT GCTGCTGCAG CCCGCGGGGT 3750 | Exon 3 K N Q C E T R T M L L Q P A G 100 CCCTCGGCTC CTACAGCTAC CGGAGTCCCC GTGAGTGGGG CCTCCACCGG 3800 S L G S Y S Y R S P 110 CCCCCTGGGC CCAGCCTGGG GGCGACACTT GCCGGGACGA CTCTGGGCCA 3850 GCCCCCTGCC GCGGAGATCC ATGGGGTGGG AGGTGATGGC TGCCCCACCA 3900 GCGTCAGAGG CAAAGGCCAG GCCTGGGCGT GACTACCCAT GCACAAGTGT 3950 TAGGGACAGA GAGACCCTTC CTCCAGGGGG TTGGATCCTC TCTGGAGCCC 4000 | var(3991):[C:0.03] ACCATTGTCT TGTCAGGCCC CTTCCCTGCC CTCTGGAGTT TTCCCCACAT 4050 AAGCAGCCCC CCAAGGCCCC TCCATATGCC TCCTCCCAAT TCTCCTCCCC 4100 AGGACCCAGG GGTTTCCTCA CTCCCACCTG GGGAATGGCT CCCACGGGGA 4150 AACCTCTTCA CTTCCGGTTC TGGCAGCGAC TTCTGCGGCT GCACCAGGAA 4200 TCCTGGTTTT CTGAGCCTGG CTCCCCCAGA TTCTGGTTTG GGGACAGGGT 4250 TCACAGGCTG TGCAGGCGAG AGCAGGGCAC TGGCTGGAGA GCAGCCGGGT 4300 GGGGGAGCAT CCCGGGCCAG CCGAGGGGCT GAGTGCCCCC AAAGCCCACA 4350 GGTGCACCCC TTCCCTGAAG CAGAGGTGAG GTTTGGGGGG CTGAGTCCCC 4400 | var(4365):[T:0.01] GACAGGGTTG TCTCTTGGGT TCCCAGACTG GGGCAGCACC TACTCCGTGT 4450 | Exon 4 H W G S T Y S V 118 CAGTGGTGGA GACCGACTAC GACCAGTACG CGCTGCTGTA CAGCCAGGGC 4500 S V V E T D Y D Q Y A L L Y S Q G 135 AGCAAGGGCC CTGGCGAGGA CTTCCGCATG GCCACCCTCT ACAGTACGTG 4550 S K G P G E D F R M A T L Y 149 CCCCGTGGAC GCCGCCCACA CGCAGGCCTG ACCAGAGGGG GCTCCCCAAG 4600 ACCCAGGGCA GGGCACACAG CATCCCCCCC GCTGAGGCCA GCTCCGTCTC 4650 CACCCTGTCC CAGGCCGAAC CCAGACCCCC AGGGCTGAGT TAAAGGAGAA 4700 | Exon 5 S R T Q T P R A E L K E K 162 ATTCACCGCC TTCTGCAAGG CCCAGGGCTT CACAGAGGAT ACCATTGTCT 4750 F T A F C K A Q G F T E D T I V 178 TCCTGCCCCA AACCGGTGAG GGGTCCTAAT CTGATGGGGA GAGGATCAAG 4800 F L P Q T 183 GTCAGATTAG AGGCAGGCAG GCAGTCTCCT GACTGGGGGA GGCAGAGGGG 4850 AGGAGGTGGC CCCGCCCTGC TCGAGGCCTG GGCCAGGGAC AGAGGGGGTG 4900 AGTGTTCAAG TCAGAACCTC CCTCCCGCAG CCCCTTCATG AGGAGCCCCC 4950 TCCATGGGGG ACATGGAGAC CAGGCGCCCA CTCTGTGCCA GGCCCCAGCA 5000 GCTCCCAGGA TGTGGGGCTT CAGCCTGGTG GGGGGCATAG GGTAGAGGGT 5050 GCCCATGGGG GATACAGGGG AACCAACCAT ACTGGGCTCA GGCACAGCCT 5100 CCTAGGGGTG GACAGCCTGC TCTTGGCAGA GGTGGAGAAA GACCCTCTCT 5150 TTGTTTCCAG TGCCCAGGGA GAGGTGGGAG GTGATGGGGG ATCTGTGCAG 5200 TTTGGGGGCT CAGTCAAGAC GAGCTCTGCG TTACGGGAGG AACAGGAAGC 5250 CCAGTGGGAA AATTGGCCTA AGTCTGGGGT TCTGACGACA GCCCCTGGCT 5300 TCTTTCTTGG CAGATAAGTG CATGACGGAA CAATAGGTGA GCCACTCCAT 5350 | Exon 6 | var(5344):[T:0.01] D K C M T E Q 190 TCATTCATTC ATTCATTCAT TCATTCATTC ATTCAACACA CATCCACCCA 5400 ACCCACTCTG CGATGGGATG GATCAGGGCC CCAGGACAGC CTGGTGCTGC 5450 AGACCCATCC TTCCCGATGG CTGCAGTCCA GGGCCGGGCG GGAGACACTG 5500 GGGCTGCCCA CATTGATGGG TGCACAGGTG TGAGGCTCAG AAGGAAAACC 5550 TGTCCCAGTG GCTGGAACAG GGCTGACTCC TGAAGGCTCA TGGTTGGGGG 5600 | var(5576):[T:0.07] | var(5599):[A:0.12] GTGCAGGTGC GAGGCCCCAG GCAGACAAGG CCAAGGGGCT ATACCACAGG 5650 GACCACCTGG CAGCAAGGGT GTCTGGCTCC TGGGCTAGGA GGAAACCAGG 5700 | var(5671):[T:0.01] GTGGGGGAGA CAGGATGGGA GGGAACAGGG GATGGAAGGG GAGGGCCAAG 5750 | var(5703):[C:0.01] GACGCTACAT GGATGCCGTG GGACAGCTCG GAGAGCAGGC TCAGGGCGGA 5800 | var(5755):[T:0.02] | var(5780):[C:0.01] TTCACCCACC ACCCCCAGGA GGGAGGCCTA GGCTGGAGCT GGAGTCTGTG 5850 GACCCTGGGG CTGGGAAGGG TGGAGTCTGT AGACCCTGGG GCAGCGGGGA 5900 TCCAAGCCCC AGGGATGGAT CTTGCTCTCT CAGCGGGGCT CAGTGGGGCT 5950 GGGGGCAGAG AAAAGTCCCC GTAGCCCGCA CCTGCTCCAT CGACTGGAGT 6000 GGAGGTGGGC TGGGGTAGAC TGCAGTCCTC CATCCTAGCC TTTCGGTCAC 6050 ACCCCTCAGG ACTCCCCAGG GCTGAAGCTG GGATCCCGGC CAGCCAGGTG 6100 | Exon 7 | UTR ACCCCCACGC TCTGGATGTC TCTGCTCTGT TCCTTCCCCG AGCCCCTGCC 6150 CCGGCTCCCC GCCAAAGCAC CCCTGCCCAC TCGGGCTTCA TCCTGCACAA 6200 | var(6170):[A:0.34] | var(6183):[A:0.12] TAAACTCCGG AAGCAAGTCA GTAGAGCTGG CTCCTGGCTG TCTGCGCTGT 6250 CATCACCCGT CCTGGGCCTG GCCCTGGCCA CCCGGACCTC CCCCTCTAAA 6300 | var(6263):[C:0.01] ATCTCAGCCT GACGTCAACA AAGGAACAGG CCCTCTAGTG TTTGCTCCCA 6350 GTGGGGTCTT GAGTCAGGAC AGCTAGGAGG GGGTGTCCCT CACTGTCTCC 6400 CACCCACCCC ACACAGTCGT GTGCCCCTGC CCCACAGCCC CACACGTCGA 6450 | var(6446):[A:0.01] GCCATACCCC CTCAGCTGCC ACTGCCACCA GGCCGGTGCT GAGCTGGGGG 6500 | var(6500):[A:0.06] TCAGTGACTC ATCTAATCCC TTAGGCAGGT GCCCTGCACC CCCAACCCCA 6550 | var(6512):[G:0.34] | var(6547):[G:0.07] CCCTGTCACC CCCTCAGCAG TAAAGGCCTG AGGCTCGAGG CCCCAGAGGA 6600 GCTTTGGACC TGTTGGGTAT CTTGAGGTGT GGGATTAACG CACTGAGATT 6650 | var(6640):[A:0.04] GGGCAGAGAT AAGGGTTTCA GGGGACAAAA AGAAACATTT GTTTGAAACA 6700 TGCCAGAGTG TCTCCACCCC GCATCAGGAC AGACTGACAG AGTGGGCTGG 6750 GGACAGGCTA CCCCATATCC CTTCTGGCTC CCTGAGCGCC CCCTGCCCTC 6800 | var(6785):[T:0.07] TGACCTGGGC CTCCAGATCA CAGCCTTGTC CACTCACCAG AGCCCTGGCA 6850 CCACGGCCAC ACCATGCCCG GCCAGTGCCC TGCCCAACCC TGCTCCCTTC 6900 CAGATTCCCA CCCAGGCAGC CATTCTCAGG TACACAATGT GCAGGACTCA 6950 CTGTGACCTG CCCACCAGGC CCCCCCGAGG CAGACCCTGC AGAGGCACCA 7000 AGCATTTTGA GGCTCGGAGG TGAGGGTGAG CTTCTGGGTG GCCTTCCCGG 7050 AGAAGGGGGC TTAGGGCTGT GCCTGAGCTC AAGGTAGGGG GGATTCCAAC 7100 ATCCCAGAGG GGCTGCAGAA GGCCGAAGAG GCAGGATGGG TGAGCTGCAG 7150 GCCCCCTCGC CCAGAGGCCC GTCAGAACTA CCCTCAGCTG CCAGGCATCC 7200 | var(7158):[A:0.38] | var(7171):[A:0.01] GGCCCCACCC CGGAGGAAAG GCAACGGATG GCTGGGGTTG GGTGGAGGGA 7250 | var(7239):[:0.01] GCCAGGCCAG AGCGCTGCAG GGTGCAACTT GATCAGAAGC CTGTCACAGT 7300 GGGTGCAGTC CCAGGCCAGC CGCCCCAGGG CACCTCAGGG GCGTAAAGCC 7350 TACAGAGGAG CCACCTCAGC TCTGCCCTGC TCCCGTGTCC GGAGGAGATG 7400 CCATCTTGCT GCATGATGCT TCGGGCTCTG CTGATCAGTT CCCTCCTTGC 7450 CCTGCTCTGG GCATCCCCAG GCCAGGCCCA GGTCCCCATC CAGGCCAACT 7500 TTGATGCCAG CCAGGTGTGC CCAGCCCTGT TTCCTCCTCA TCTCCAATGA 7550 GTCCTCCCGG CTTTGGTGCT GCACCCCGGG TCCCTGTCCA CACCCTCTTT 7600 GATCCAGGCT CAGCAGGGCT AGGGGCAGGG GAAACCCCCA CCTCACCCGC 7650 | var(7613):[T:0.01] TCCGTCTGAC TGGAGTAGGG GTTGGCTGGG GAAGACTGCA GCCTCCATCC 7700 TACCTTTTCA GTTGCATCCC CCAACACTCC CCAGGGCCCA AAATAGGGAC 7750 | var(7727):[A:0.07] AAGTTGGTTG CCTGTGCCTC ACTGTCCCCC ACCCACCCCA CAAAGACCTG 7800 TGACCTTGCC ACAGCCCCAC CCATCCAGCC GTACCCCCTG GGTGCCAGCT 7850 GCAGACAGGC CGGTGCTGGG CTGGTGGGGG CCAGTTGCTC ATGTACTGAG 7900 GCCCCCCTCC CTCAGTTCTG CATCGGGGTC GAGATGTGTA CAGCAGCCCC 7950 TGCCGTGGCC AGGAAGCAGC TGTGTCGGGG CAGAATGTGG TGGGCTCAGG 8000 CCCAGGGCAC AGGGGCGGCC TCCCAGCCTT CCCTGCACTT GCCCTGCAGT 8050 TCCAGGGCAC CTGGTACATG GTCGGGGTGG TGTCAGATGA CCAGGACTTC 8100 CTGGACTCCA AGGACACCAT GAAGATGGCT GTGGTCTTAG TGAC