Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000288 CC 14 13 27 CT 6 7 13 TT 2 1 3 1.099 0.002 0.637 000430 AA 16 5 21 AG 5 12 17 GG 1 5 6 0.499 0.182 0.695 000543 -- 0 0 0 +- 1 0 1 ++ 21 22 43 0.012 0.000 0.006 000626 CC 20 22 42 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 000804 AA 0 0 0 AG 0 1 1 GG 21 21 42 0.000 0.012 0.006 001194 GG 14 14 28 GT 8 8 16 TT 2 0 2 0.296 1.086 0.023 001368 AA 0 0 0 AG 2 0 2 GG 22 21 43 0.045 0.000 0.023 006952 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 007052 -- 0 0 0 +- 1 4 5 ++ 23 19 42 0.011 0.209 0.148 012189 CC 0 0 0 CT 0 1 1 TT 23 17 40 0.000 0.015 0.006 012241 AA 22 17 39 AG 1 0 1 GG 0 1 1 0.011 18.000 17.537 012267 CC 22 18 40 CT 0 0 0 TT 1 0 1 23.000 0.000 41.000 012369 AA 0 0 0 AG 1 0 1 GG 22 18 40 0.011 0.000 0.006 012612 AA 22 18 40 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 013154 AA 1 0 1 AG 2 9 11 GG 19 14 33 4.455 1.361 0.005 013616 AA 23 18 41 AT 0 4 4 TT 1 0 1 24.000 0.220 3.784 014310 AA 0 0 0 AT 3 0 3 TT 21 23 44 0.107 0.000 0.051 014351 AA 0 0 0 AC 0 1 1 CC 24 22 46 0.000 0.011 0.005 017983 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 018079 AA 0 0 0 AG 1 3 4 GG 23 20 43 0.011 0.112 0.093 018163 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 026890 CC 0 0 0 CT 2 4 6 TT 18 19 37 0.055 0.209 0.242 027862 AA 0 0 0 AT 3 0 3 TT 21 23 44 0.107 0.000 0.051 028013 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 028478 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 028819 CC 0 0 0 CT 1 4 5 TT 17 18 35 0.015 0.220 0.178 033464 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 033556 CC 0 0 0 CG 1 0 1 GG 22 23 45 0.011 0.000 0.006 033585 AA 1 6 7 AG 4 10 14 GG 16 5 21 1.037 0.043 2.625 040139 AA 20 22 42 AG 3 0 3 GG 0 0 0 0.112 0.000 0.054 040453 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 040570 GG 22 23 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 040667 CC 20 14 34 CT 3 9 12 TT 1 0 1 2.617 1.361 0.002 040737 CC 0 0 0 CG 1 0 1 GG 23 21 44 0.011 0.000 0.006 047379 -- 0 0 0 +- 2 0 2 ++ 22 23 45 0.045 0.000 0.022 048263 AA 1 4 5 AG 6 13 19 GG 17 5 22 0.240 0.747 0.086 049497 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 049612 AA 3 1 4 AG 5 4 9 GG 12 15 27 2.783 0.930 4.296 050056 CC 22 22 44 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 050103 CC 17 5 22 CT 5 13 18 TT 1 4 5 0.571 0.747 0.201 056642 CC 0 5 5 CT 7 13 20 TT 17 5 22 0.700 0.391 0.020 057197 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 057210 AA 0 0 0 AG 1 5 6 GG 23 18 41 0.011 0.342 0.218 057521 GG 24 22 46 GT 0 1 1 TT 0 0 0 0.000 0.011 0.005 061769 AA 1 5 6 AC 4 13 17 CC 19 5 24 1.361 0.391 1.090 062027 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 062309 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 062460 AA 21 21 42 AG 2 0 2 GG 0 0 0 0.048 0.000 0.024 062632 AA 21 22 43 AG 2 0 2 GG 0 0 0 0.048 0.000 0.023 062844 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 062966 AA 0 0 0 AG 1 0 1 GG 22 21 43 0.011 0.000 0.006 064874 AA 0 5 5 AG 2 13 15 GG 19 5 24 0.053 0.391 1.153 065858 AA 0 0 0 AG 2 0 2 GG 21 18 39 0.048 0.000 0.026 065992 -- 23 18 41 +- 1 5 6 ++ 0 0 0 0.011 0.342 0.218 066205 AA 1 7 8 AT 8 14 22 TT 12 2 14 0.053 1.775 0.016 066367 GG 0 0 0 GT 4 0 4 TT 18 23 41 0.220 0.000 0.097 066847 CC 3 2 5 CT 6 2 8 TT 10 19 29 1.377 8.746 7.923 066883 AA 18 20 38 AG 0 1 1 GG 0 0 0 0.000 0.012 0.007 067322 GG 0 0 0 GT 0 1 1 TT 23 21 44 0.000 0.012 0.006 067486 AA 0 0 0 AT 3 0 3 TT 16 18 34 0.140 0.000 0.066 068671 -- 23 23 46 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.005 068897 AA 1 6 7 AC 4 12 16 CC 19 5 24 1.361 0.048 2.206 068931 AA 0 0 0 AG 2 0 2 GG 21 23 44 0.048 0.000 0.023 069323 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 071188 CC 15 20 35 CG 7 3 10 GG 2 0 2 0.730 0.112 1.214 072749 CC 21 23 44 CT 2 0 2 TT 0 0 0 0.048 0.000 0.023 073465 AA 24 21 45 AG 0 1 1 GG 0 0 0 0.000 0.012 0.006 074073 AA 23 18 41 AC 1 5 6 CC 0 0 0 0.011 0.342 0.218 074126 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 074127 GG 0 0 0 GT 0 1 1 TT 24 22 46 0.000 0.011 0.005 074345 AA 0 0 0 AC 2 0 2 CC 22 23 45 0.045 0.000 0.022 075217 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 075797 -- 23 22 45 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.006 079897 GG 19 22 41 GT 5 0 5 TT 0 0 0 0.324 0.000 0.152 080591 CC 23 19 42 CT 0 2 2 TT 0 0 0 0.000 0.053 0.024 081344 CC 0 0 0 CT 2 0 2 TT 21 23 44 0.048 0.000 0.023 081483 AA 0 0 0 AC 0 2 2 CC 24 21 45 0.000 0.048 0.022 081567 AA 0 0 0 AT 1 0 1 TT 23 22 45 0.011 0.000 0.006 082292 AA 18 17 35 AG 2 0 2 GG 0 0 0 0.055 0.000 0.029 083955 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 084046 CC 0 0 0 CT 3 0 3 TT 21 21 42 0.107 0.000 0.054 084466 AA 20 13 33 AC 3 9 12 CC 1 0 1 2.617 1.455 0.006 084806 GG 0 0 0 GT 1 0 1 TT 23 22 45 0.011 0.000 0.006 084855 CC 24 20 44 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 086503 AA 22 23 45 AT 1 0 1 TT 0 0 0 0.011 0.000 0.006 086961 AA 23 22 45 AG 0 1 1 GG 0 0 0 0.000 0.011 0.006 088737 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 088922 AA 15 20 35 AG 7 3 10 GG 2 0 2 0.730 0.112 1.214 089535 CC 0 0 0 CT 3 9 12 TT 21 14 35 0.107 1.361 1.007 090344 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 090535 CC 24 22 46 CG 0 1 1 GG 0 0 0 0.000 0.011 0.005 090893 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 091734 CC 0 0 0 CT 1 1 2 TT 23 21 44 0.011 0.012 0.023 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000543: TTAA 007052: T 047379: T 065992: A 068671: c 075797: AT