************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 prkag.phase.inp prkag.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST prkag.phase.out_freqs : haplotype frequency estimates prkag.phase.out_pairs : most likely haplotype pairs for each individual prkag.phase.out_recom : estimates of recombination parameters prkag.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 25 Positions of loci: 72 156 231 259 263 334 421 853 1083 1238 1713 1880 2790 3241 3243 3474 3635 3716 4304 4317 4456 4491 4581 4910 5238 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file prkag.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 GTTCGAGCGTCGGCDCAACCGAIAG 1.000000 2 GTTCGAGCGTCGGCDCAACCGAIGA 1.000000 3 GTTCGAGCGTCGGCDCAACCGAIGG 5.000000 4 GTTCGAGCGTCGGCDCAGCCGAIAG 7.000000 5 GTTCGAGCGTCGGCDCAGCCGAIGG 2.000000 6 GTTCGAGCGTCGGCDCCACCGAIAA 8.000000 7 GTTCGAGCGTCGGCDCCACCGAIAG 2.000000 8 GTTCGAGCGTCGGCDACACCGAIAA 1.000000 9 GTTCGAGCGTCGGGDCAACCGAIGG 1.000000 10 GTTCGAGCGTCGCCDCAATTCTDGG 1.000000 11 GTTCGAGTGACACCDCAATTCTDGG 1.000000 12 GTGCGAGCGTCGCCICAACCGAIGG 1.000000 13 GCTCGAGCGTCGGCDCAACCGAIAG 2.000000 14 GCTCGAGCGTTGGCDCAACCGAIAG 1.000000 15 GCTCGAGCGTTGCCDCAACCGAIAG 1.000000 16 GCTCGAGCGTTGCCDCAACCGAIGG 3.000000 17 GCTCGAGTGACGGCDAAACCGAIGG 2.000000 18 GCGCGAGTGACGCCIAAACCGAIAG 1.000000 19 GCGCGAGTGACACCDCAATTCTDGG 23.000000 20 GCGCGAGTGACACCDCAGCCGAIAG 1.000000 21 GCGCGAGTGACACCDCCATTCTDGG 1.000000 22 GCGCGGGTAACGCCDCAACCGAIAG 1.000000 23 GCGCGGGTAACGCCIAAACCGAIAG 1.000000 24 GCGCGGGTAACGCGDCAACCGAIAG 5.000000 25 GCGCGGGTAACGCGDCAACCGAIGG 2.000000 26 ACGTGAGTAACGGCDCCACCGAIAA 1.000000 27 ACGTGAGTAACGCCIAAACCGAIAG 4.000000 28 ACGTGAGTAACGCCIAAGCCGAIAG 3.000000 29 ACGTGAGTAACGCGIAAACCGAIAG 1.000000 30 ACGTGAATATCGCCIAAACCGAIAG 1.000000 31 ACGTGAATAACGCCIAAACCGAIAG 1.000000 32 ACGTGAATAACGCCIAAGCCGAIAG 3.000000 33 ACGTAAGTAACGCCIAAGCCGAIAG 5.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY DY01: (2,6) DY02: (3,24) DY03: (3,12) DY04: (5,6) DY05: (19,32) DY06: (9,24) DY07: (17,28) DY08: (6,33) DY09: (13,24) DY10: (22,33) DY11: (19,32) DY12: (6,19) DY13: (24,29) DY14: (15,19) DY15: (28,33) DY16: (1,13) DY17: (3,33) DY18: (16,33) DY19: (6,16) DY20: (14,24) DY21: (3,19) DY22: (3,27) DY23: (16,18) DY24: (17,28) E101: (5,25) E102: (19,25) E103: (19,21) E104: (4,19) E105: (19,27) E106: (4,19) E107: (4,19) E108: (19,19) E109: (6,19) E110: (19,19) E111: (7,19) E112: (4,7) E113: (4,19) E114: (10,11) E115: (19,27) E116: (19,30) E117: (20,26) E118: (4,19) E119: (19,27) E120: (6,32) E121: (6,31) E122: (4,19) E123: (8,23) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 DY01 G T T C G A G C G T C G G C D C A A C C G A I G A G T T C G A G C G T C G G C D C C A C C G A I A A 0 DY02 G T T C G A G C G T C G G C D C A A C C G A I (G) G G C G C G G G T A A C G C G D C A A C C G A I (A) G 0 DY03 G T (T) C G A G C G T C G (G) C (D) C A A C C G A I G G G T (G) C G A G C G T C G (C) C (I) C A A C C G A I G G 0 DY04 G T T C G A G C G T C G G C D C A G C C G A I G G G T T C G A G C G T C G G C D C C A C C G A I A A 0 DY05 G C G C G A G T G A C A C C D C A A T T C T D G G A C G T G A A T A A C G C C I A A G C C G A I A G 0 DY06 G T T C G A G C G T C G G G D C A A C C G A I (G) G G C G C G G G T A A C G C G D C A A C C G A I (A) G 0 DY07 G C T C G A G T G A C G G C D A A (A) C C G A I G G A C G T G A G T A A C G C C I A A (G) C C G A I A G 0 DY08 G T T C G A G C G T C G G C D C C A C C G A I A A A C G T A A G T A A C G C C I A A G C C G A I A G 0 DY09 G C T C G A G C G T C G G C D C A A C C G A I A G G C G C G G G T A A C G C G D C A A C C G A I A G 0 DY10 G C G C G G G T A A C G C C D C A A C C G A I A G A C G T A A G T A A C G C C I A A G C C G A I A G 0 DY11 G C G C G A G T G A C A C C D C A A T T C T D G G A C G T G A A T A A C G C C I A A G C C G A I A G 0 DY12 G T T C G A G C G T C G G C D C C A C C G A I A [A] G C G C G A G T G A C A C C D C A A T T C T D G G 0 DY13 G C G C G G G T A A C G C G D C A A C C G A I A G A C G T G A G T A A C G C G I A A A C C G A I A G 0 DY14 G C T C G A G C G T T G C C D C A A C C G A I (A) G G C G C G A G T G A C A C C D C A A T T C T D (G) G 0 DY15 A C G T G A G T A A C G C C I A A G C C G A I A G A C G T A A G T A A C G C C I A A G C C G A I A G 0 DY16 G T T C G A G C G T C G G C D C A A C C G A I A G G C T C G A G C G T C G G C D C A A C C G A I A G 0 DY17 G T T C G A G C G T C G G C D C A A C C G A I G G A C G T A A G T A A C G C C I A A G C C G A I A G 0 DY18 G C T C G A G C G T T G C C D C A A C C G A I [G] G A C G T A A G T A A C G C C I A A G C C G A I A G 0 DY19 G T T C G A G C G T C G G C D C C A C C G A I A A G C T C G A G C G T T G C C D C A A C C G A I G G 0 DY20 G C T C G A G C G T (T) G (G) C D C A A C C G A I A G G C G C G G G T A A (C) G (C) G D C A A C C G A I A G 0 DY21 G T T C G A G C G T C G G C D C A A C C G A I G G G C G C G A G T G A C A C C D C A A T T C T D G G 0 DY22 G T T C G A G C G T C G G C D C A A C C G A I G G A C G T G A G T A A C G C C I A A A C C G A I A G 0 DY23 G C T C G A G C G T T G C C D C A A C C G A I G G G C G C G A G T G A C G C C I A A A C C G A I A G 0 DY24 G C T C G A G T G A C G G C D A A (A) C C G A I G G A C G T G A G T A A C G C C I A A (G) C C G A I A G 0 E101 G T T C G A G C G T C G G C D C A G C C G A I G G G C G C G G G T A A C G C G D C A A C C G A I G G 0 E102 G C G C G A G T G A C A C C D C A A T T C T D G G G C G C G G G T A A C G C G D C A A C C G A I G G 0 E103 G C G C G A G T G A C A C C D C A A T T C T D G G G C G C G A G T G A C A C C D C C A T T C T D G G 0 E104 G T T C G A G C G T C G G C D C A G C C G A I A G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E105 G C G C G A G T G A C A C C D C A A T T C T D G G A C G T G A G T A A C G C C I A A A C C G A I A G 0 E106 G T T C G A G C G T C G G C D C A G C C G A I A G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E107 G T T C G A G C G T C G G C D C A G C C G A I A G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E108 G C G C G A G T G A C A C C D C A A T T C T D G G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E109 G T T C G A G C G T C G G C D C C A C C G A I A [A] G C G C G A G T G A C A C C D C A A T T C T D G G 0 E110 G C G C G A G T G A C A C C D C A A T T C T D G G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E111 G T T C G A G C G T C G G C D C C A C C G A I A G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E112 G T T C G A G C G T C G G C D C A G C C G A I A G G T T C G A G C G T C G G C D C C A C C G A I A G 0 E113 G T T C G A G C G T C G G C D C A G C C G A I A G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E114 G T T C G A G C G T C G C C D C A A T T C T D G G G T T C G A G T G A C A C C D C A A T T C T D G G 0 E115 G C G C G A G T G A C A C C D C A A T T C T D G G A C G T G A G T A A C G C C I A A A C C G A I A G 0 E116 G C G C G A G T G (A) C A C C D C A A T T C T D G G A C G T G A A T A (T) C G C C I A A A C C G A I A G 0 E117 G C G C G A G T G A C A C C D C (A) (G) C C G A I A (G) A C G T G A G T A A C G G C D C (C) (A) C C G A I A (A) 0 E118 G T T C G A G C G T C G G C D C A G C C G A I A G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E119 G C G C G A G T G A C A C C D C A A T T C T D G G A C G T G A G T A A C G C C I A A A C C G A I A G 0 E120 G T T C G A G C G T C G G C D C C A C C G A I A A A C G T G A A T A A C G C C I A A G C C G A I A G 0 E121 G T T C G A G C G T C G G C D C C A C C G A I A A A C G T G A A T A A C G C C I A A A C C G A I A G 0 E122 G T T C G A G C G T C G G C D C A G C C G A I A G G C G C G A G T G A C A C C D C A A T T C T D G G 0 E123 G T T C G A G C G T C G G C D A C A C C G A I A A G C G C G G G T A A C G C C I A A A C C G A I A G END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 DY01 = = = = = = = = = = = = = = = ? A = = = = = = G = = = = = = = = = = = = = = = = ? C = = = = = = A = 0 DY02 = T T = = A = C G T = = G C = = = = = = = = = (G) = = C G = = G = T A A = = C G = = = = = = = = = (A) = 0 DY03 = = (T) = = = = = = = = = (G) = (D) = = = = = = = = = = = = (G) = = = = = = = = = (C) = (I) = = = = = = = = = = 0 DY04 = = = = = = = = = = = = = = = ? A G = = = = = G G = = = = = = = = = = = = = = = ? C A = = = = = A A 0 DY05 G = = C = = G = G = = A = = D ? ? A T T C T D G = A = = T = = A = A = = G = = I ? ? G C C G A I A = 0 DY06 = T T = = A = C G T = = G = = = = = = = = = = (G) = = C G = = G = T A A = = C = = = = = = = = = = (A) = 0 DY07 G = T C = = = = G = = ? G = D = = (A) = = = = ? G = A = G T = = = = A = = ? C = I = = (G) = = = = ? A = 0 DY08 G T T C G = = C G T = = G ? D C C A = = = = = = A A C G T A = = T A A = = C ? I A A G = = = = = = G 0 DY09 = = T = = A = C G T = ? G C = = = = = = = = = = = = = G = = G = T A A = ? C G = = = = = = = = = = = 0 DY10 G = = C G G = = = = = = = = D C = A = = = = = = = A = = T A A = = = = = = = = I A = G = = = = = = = 0 DY11 G = = C = = G = G = = ? = = D C = A T T C T D G = A = = T = = A = A = = ? = = I A = G C C G A I A = 0 DY12 = T T = = = = C = T = G G ? ? = C = C C G A I A ? = C G = = = = T = A = A C ? ? = A = T T C T D G ? 0 DY13 G = = C = G = = = = = = = = D C = = = = = = = = = A = = T = A = = = = = = = = I A = = = = = = = = = 0 DY14 = = T = = = = C = T T G = = = = = = C C G A I (A) = = = G = = = = T = A C A = = = = = = T T C T D (G) = 0 DY15 = = = = G = = = = = ? ? = = = = = = = = = = = = = = = = = A = = = = = ? ? = = = = = = = = = = = = = 0 DY16 = T = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = 0 DY17 G T T C G = = C G T = = G = D C = A = = = = = G = A C G T A = = T A A = = C = I A = G = = = = = A = 0 DY18 G = T C G = = C G T T = = = D C = A = = = = ? ? = A = G T A = = T A A C = = = I A = G = = = = ? ? = 0 DY19 = T = = = = = = = = C = G = = = C = = = = = = A A = C = = = = = = = = T = C = = = A = = = = = = G G 0 DY20 = = T = = A = C G T (T) = (G) C = = = = = = = = = = = = = G = = G = T A A (C) = (C) G = = = = = = = = = = = 0 DY21 = T T = = = = C = T = G G = = = = = C C G A I = = = C G = = = = T = A = A C = = = = = T T C T D = = 0 DY22 G T T C = = = C ? T = ? G = D ? = = = = = = = G = A C G T = = = T ? A = ? C = I ? = = = = = = = A = 0 DY23 = = T = = = = C = T T = = = D C = = = = = = = G = = = G = = = = T = A C = = = I A = = = = = = = A = 0 DY24 G = T C = = = = G = = = G = D = = (A) = = = = = G = A = G T = = = = A = = = C = I = = (G) = = = = = A = 0 E101 = T T = = A = C G T = = G C = = = G = = = = = = = = C G = = G = T A A = = C G = = = A = = = = = = = 0 E102 = = = = = A = = G = = A = C = = = = T T C T D = = = = = = = G = = A = = G = G = = = = C C G A I = = 0 E103 = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = 0 E104 = T T = = = = C = T = G G = = = = G C C G A I A = = C G = = = = T = A = A C = = = = A T T C T D G = 0 E105 G = = C = = = = G = = A = = D ? = = T T C T D G = A = = T = = = = A = = G = = I ? = = C C G A I A = 0 E106 = T T = = = = C = T = G G = = = = G C C G A I A = = C G = = = = T = A = A C = = = = A T T C T D G = 0 E107 = T T = = = = C = T = G G = = = = G C C G A I A = = C G = = = = T = A = A C = = = = A T T C T D G = 0 E108 = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = ? ? = 0 E109 = T T = = = = C = T = G G ? ? = C = C C G A ? ? ? = C G = = = = T = A = A C ? ? = A = T T C T ? ? ? 0 E110 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E111 = T T = = = = C = T = G G = = = C = C C G A I A = = C G = = = = T = A = A C = = = A = T T C T D G = 0 E112 = = = = = = = = = = = = = = = = A G = = = = = = = = = = = = = = = = = = = = = = = C A = = = = = = = 0 E113 = T T = = = = C = T = G G = = = = G C C G A I A = = C G = = = = T = A = A C = = = = A T T C T D G = 0 E114 = = = = = = = C = T = G = = = = = = = = = = = = = = = = = = = = T = A = A = = = = = = = = = = = = = 0 E115 G = = C = = = = G = = A = = D C = = T T C T D G = A = = T = = = = A = = G = = I A = = C C G A I A = 0 E116 G = = C = = G = G (A) = A = = D C = = T T C T ? ? = A = = T = = A = A (T) = G = = I A = = C C G A ? ? = 0 E117 G = = C = = = = G = = A C = = = (A) (G) = = = = ? ? (G) A = = T = = = = A = = G G = = = (C) (A) = = = = ? ? (A) 0 E118 = T T = = = = C = T = G G = = = = G C C G A I A = = C G = = = = T = A = A C = = = = A T T C T D G = 0 E119 G = = C = = = = G = = A = = D ? = = T T C T ? ? = A = = T = = = = A = = G = = I ? = = C C G A ? ? = 0 E120 G T T C = = G C G T = = G = D ? C A = = = = = = A A C G T = = A T A A = = C = I ? A G = = = = = = G 0 E121 G T T C = = G C G T = = G = D ? C = = = = = ? ? A A C G T = = A T A A = = C = I ? A = = = = = ? ? G 0 E122 = T T = = = = C = T = G G = = = = G C C G A ? A = = C G = = = = T = A = A C = = = = A T T C T ? G = 0 E123 = T T = = A = C G T = = G = D = C = = = = = = = A = C G = = G = T A A = = C = I = A = = = = = = = G END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = = = = = = = = = = = ? 0.98 = = = = = = 1.00 = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 0.96 = = = = = = = = = 0.77 = = = 0.70 = = = = = = = = = 0.82 = 0.89 = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 0.99 = = = = = 0.96 1.00 1.00 = = 1.00 = = 0.99 = 1.00 = = 1.00 = = 1.00 ? ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = 0.96 = = = = = = = = = = 0.57 = 1.00 = 1.00 1.00 = = = = 1.00 = = ? 1.00 = 1.00 = = 0.69 = = = = ? 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 ? 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 1.00 1.00 = ? 1.00 1.00 = = = = = = = = = = = 1.00 = = 1.00 1.00 1.00 = = = = = = = = 0.91 0.91 = 0.98 = = = = = = = 1.00 = = 1.00 = = 0.99 = 1.00 = = ? = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 ? ? = 0.99 = 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = 1.00 = 1.00 = = = = = = = = 1.00 1.00 = = = = = = = = = = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 0.79 = = = = = 1.00 = = = = = ? ? = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 = 0.97 = = = = = 0.98 = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 = = = = ? ? = = 1.00 = = = = = = = = 1.00 = 1.00 = = = 1.00 = = = = = = 0.97 1.00 = = 1.00 = = 1.00 = 1.00 1.00 1.00 0.76 = 0.82 0.99 = = = = = = = = = = = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 ? 1.00 = ? 1.00 = 1.00 ? = = = = = = = 1.00 = = = 1.00 = = = = 1.00 = 1.00 1.00 = = = 1.00 1.00 = = = = = = = 0.95 = 1.00 = 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 = = 0.68 = = = = = 1.00 = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = = = 0.98 = = = = = = = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 0.99 = 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 ? = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 0.99 = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 0.99 = = = = = = = = = = = = = = = = = = = = = = = ? ? = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 ? ? = 1.00 = 1.00 1.00 1.00 1.00 ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = 0.95 = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 0.99 = = = = = = = = 1.00 = 1.00 = 0.99 = = = = = = = = = = = = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = 0.95 = 1.00 0.50 = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 ? ? = 0.94 = = 0.94 = = = = 0.94 = = 0.94 0.92 = = = 0.67 0.67 = = = = ? ? 0.67 = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 0.99 = 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 ? = = 1.00 1.00 1.00 1.00 ? ? = 1.00 1.00 1.00 1.00 = = 0.98 1.00 1.00 1.00 = = 1.00 = 1.00 ? 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 = = 0.92 1.00 1.00 1.00 = = 1.00 = 1.00 ? 1.00 = = = = = ? ? 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 ? 0.99 = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 = 1.00 = 1.00 = = = = = = = 1.00 END PHASEPROBS