Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000120 * 000133 T 10 2 12 C 38 44 82 000261 A 0 2 2 G 48 44 92 000329 C 1 0 1 T 47 46 93 000330 A 1 13 14 G 47 33 80 000425 G 0 13 13 A 48 33 81 000682 T 14 27 41 C 34 17 51 000826 G 6 2 8 A 42 44 86 000973 G 16 0 16 T 32 46 78 001694 T 2 0 2 A 46 46 92 002633 G 1 0 1 C 47 46 93 002695 C 5 0 5 T 43 46 89 002917 T 1 3 4 C 47 41 88 003117 A 17 17 34 G 31 27 58 005823 A 1 0 1 G 41 38 79 006161 C 0 1 1 T 48 45 93 006245 C 5 11 16 A 43 35 78 006399 A 27 3 30 G 19 41 60 006445 G 12 0 12 A 36 46 82 006455 T 1 0 1 C 47 46 93 007378 A 17 7 24 C 25 21 46 007379 A 1 0 1 G 41 30 71 007570 A 0 5 5 G 44 35 79 008133 T 0 4 4 C 44 18 62 008206 A 9 0 9 G 35 20 55 008728 A 0 2 2 G 46 42 88 008756 T 7 0 7 C 37 28 65 008884 C 3 2 5 T 41 26 67 008990 T 0 6 6 C 42 18 60 010426 A 1 2 3 G 41 32 73 011182 C 5 8 13 T 33 28 61 011298 G 7 1 8 A 29 41 70 011724 T 1 1 2 C 39 43 82 011753 A 0 4 4 G 42 42 84 011797 T 2 2 4 G 44 44 88 012012 + 13 1 14 - 31 43 74 012354 A 18 5 23 G 16 39 55 012580 G 10 1 11 A 30 35 65 012648 T 12 2 14 C 26 32 58 012717 G 4 5 9 A 34 29 63 013187 A 18 7 25 G 14 37 51 016414 A 8 1 9 G 26 43 69 016616 A 1 2 3 G 47 44 91 016862 C 12 3 15 G 36 43 79 016872 G 6 0 6 A 42 46 88 016897 - 0 1 1 + 48 45 93 016915 T 0 5 5 A 48 41 89 016928 A 0 1 1 G 48 45 93 017034 G 1 0 1 A 47 46 93 017157 G 3 0 3 A 45 46 91 017257 A 1 2 3 G 47 44 91 017516 C 4 9 13 T 36 37 73 017752 T 5 2 7 C 43 44 87 017868 A 3 11 14 G 45 35 80 017995 - 11 0 11 + 37 46 83 018027 G 2 13 15 A 46 33 79 018113 T 0 1 1 C 48 45 93 018117 G 5 0 5 C 39 46 85 018143 C 13 14 27 T 21 32 53 019285 A 0 1 1 T 36 41 77 019590 C 2 0 2 T 46 46 92 019652 A 1 0 1 G 47 46 93 019798 A 1 0 1 G 47 46 93 019826 A 1 0 1 T 47 46 93 019874 G 0 8 8 A 48 38 86 019962 T 1 0 1 C 39 38 77 020048 A 3 0 3 C 31 42 73 020081 T 1 0 1 C 35 42 77 020137 A 0 2 2 G 40 38 78 020207 A 0 2 2 G 38 38 76 020319 C 0 5 5 T 46 21 67 020701 A 4 0 4 G 44 46 90 020835 A 3 0 3 G 45 46 91 021144 A 8 0 8 G 28 40 68 021189 C 1 0 1 G 33 40 73 021239 T 3 0 3 G 31 42 73 022680 T 4 0 4 C 28 46 74 022681 A 7 23 30 G 23 23 46 022874 T 0 1 1 C 34 45 79 022902 G 5 0 5 C 29 42 71 023118 C 4 0 4 A 30 42 72 023138 C 6 10 16 A 28 32 60 023152 C 0 12 12 T 34 30 64 023223 T 21 16 37 C 13 24 37 023377 T 0 2 2 C 48 44 92 023454 C 0 2 2 G 48 44 92 024248 A 8 8 16 G 22 38 60 024287 A 2 0 2 G 28 46 74 024723 C 11 5 16 T 23 27 50 024814 T 2 0 2 G 38 40 78 024967 A 6 0 6 T 22 44 66 024968 A 7 0 7 T 21 44 65 025053 - 0 5 5 + 24 39 63 025365 A 11 0 11 C 29 28 57 025606 C 11 0 11 A 29 26 55 029829 C 8 1 9 A 32 25 57 030123 C 5 0 5 T 39 40 79 030293 T 0 2 2 C 32 42 74 030489 C 1 10 11 T 39 30 69 030490 A 3 11 14 G 35 29 64 030712 A 6 0 6 G 38 24 62 030769 A 1 3 4 T 43 19 62 031041 C 2 0 2 T 28 42 70 035852 C 2 0 2 A 26 40 66 036251 C 26 8 34 A 18 28 46 036415 G 0 9 9 A 28 35 63 036467 T 4 10 14 C 22 32 54 036494 T 2 0 2 C 24 44 68 036541 T 4 0 4 C 24 44 68 036615 A 10 5 15 G 28 37 65 036658 C 4 18 22 T 36 26 62 036742 T 0 4 4 A 38 40 78 036881 C 4 10 14 T 34 34 68 038782 C 20 12 32 A 16 30 46 038811 C 19 12 31 T 17 30 47 039219 T 14 17 31 C 34 29 63 039220 A 0 1 1 G 48 45 93 039289 T 8 0 8 C 40 46 86 040691 G 22 7 29 A 10 33 43 040871 T 2 0 2 C 24 40 64 041370 T 3 0 3 C 45 46 91 043992 A 8 7 15 G 24 37 61 044235 G 5 19 24 A 25 25 50 045071 A 0 7 7 G 34 37 71 045084 C 5 0 5 G 19 46 65 045374 T 1 7 8 A 21 39 60 046244 C 1 0 1 T 33 40 73 046378 C 0 2 2 T 32 38 70 046762 A 2 3 5 G 36 41 77 048462 T 3 0 3 C 35 24 59 048566 C 7 0 7 T 31 24 55 049290 T 6 3 9 C 40 43 83 049372 G 6 7 13 A 40 39 79 049607 C 1 0 1 T 47 46 93 049845 C 2 2 4 T 42 42 84 049873 G 9 0 9 A 37 44 81 050828 A 6 0 6 C 38 40 78 051091 G 1 3 4 C 21 39 60 051531 C 0 1 1 T 40 45 85 051764 C 1 0 1 T 47 46 93 052206 G 0 4 4 T 44 42 86 052269 - 3 8 11 + 43 32 75 052294 G 2 0 2 A 46 46 92 052479 C 2 0 2 T 44 46 90 053000 - 1 0 1 + 47 44 91 053167 - 12 16 28 + 22 30 52 053196 C 0 4 4 T 34 42 76 057305 G 15 21 36 A 23 23 46 057443 G 1 0 1 A 41 44 85 057890 A 1 0 1 G 43 42 85 058351 G 1 0 1 A 43 46 89 058603 C 0 2 2 T 34 44 78 058643 C 0 4 4 T 34 42 76 058829 G 17 18 35 T 25 28 53 058856 G 0 2 2 A 46 44 90 060067 G 0 3 3 A 38 43 81 060486 T 1 0 1 C 37 46 83 061631 G 2 0 2 A 38 42 80 061634 G 0 4 4 T 40 38 78 061652 C 0 1 1 T 40 43 83 062222 T 0 4 4 C 44 42 86 062253 G 0 2 2 C 44 44 88 062311 T 1 0 1 C 43 46 89 062669 A 1 0 1 G 33 44 77 062783 G 0 4 4 A 40 38 78 062964 T 2 0 2 G 36 42 78 063070 T 2 0 2 A 36 40 76 063366 C 0 2 2 T 48 44 92 063467 C 2 4 6 T 46 42 88 063771 C 0 4 4 T 48 38 86 063838 T 2 0 2 C 46 42 88 063843 C 6 10 16 T 42 32 74 064244 C 1 0 1 T 43 46 89 064391 G 5 4 9 A 41 42 83 064635 G 1 0 1 A 47 46 93 064771 C 1 2 3 T 45 38 83 065690 A 0 1 1 C 48 45 93 065912 T 9 0 9 A 37 46 83 065990 C 0 4 4 T 46 42 88 066090 C 5 10 15 T 41 36 77 066318 G 7 4 11 A 41 42 83 066460 T 17 18 35 A 31 28 59 067022 T 1 0 1 G 43 46 89 067113 C 2 0 2 T 42 46 88 067134 C 1 0 1 T 43 46 89 067272 T 4 10 14 C 42 36 78 068150 G 0 4 4 A 42 36 78 068159 G 0 3 3 A 46 37 83 068309 A 0 4 4 T 48 42 90 068359 G 9 0 9 T 39 46 85 068371 T 2 0 2 C 46 46 92 068500 G 6 0 6 A 42 46 88 068648 - 1 0 1 + 31 46 77 068656 G 1 0 1 A 31 46 77 068689 T 1 0 1 A 31 46 77 068877 C 0 1 1 T 30 45 75 068950 T 5 0 5 G 31 46 77 069071 T 1 0 1 C 35 46 81 069116 T 0 1 1 G 36 45 81 069439 T 5 8 13 A 41 34 75 069759 C 7 8 15 A 41 38 79 070061 C 0 6 6 T 48 40 88 070186 T 10 13 23 C 36 33 69 070238 T 0 2 2 C 46 44 90 070396 A 1 0 1 C 45 46 91 070912 C 0 4 4 T 42 40 82 071145 G 0 1 1 A 44 45 89 071377 T 3 6 9 C 31 40 71 071751 C 2 0 2 T 42 44 86 071801 A 0 1 1 G 44 43 87 072022 G 0 1 1 C 48 45 93 072096 T 11 6 17 C 37 40 77 072182 A 11 5 16 G 37 41 78 072320 T 0 4 4 C 48 42 90 072381 G 10 22 32 A 38 24 62 072440 C 5 10 15 T 43 36 79 072704 C 0 2 2 G 48 44 92 073486 T 2 0 2 G 44 46 90 073679 G 0 1 1 A 48 45 93 073692 T 1 0 1 C 47 46 93 073853 G 1 0 1 A 45 46 91 073977 A 1 0 1 G 29 36 65 073980 A 1 0 1 T 29 36 65 074608 C 1 0 1 T 41 46 87 074759 C 9 0 9 T 33 46 79 074821 A 11 6 17 G 31 40 71 074885 T 3 6 9 C 39 40 79 075215 A 0 1 1 G 46 43 89 075266 G 0 4 4 A 46 40 86 075628 A 16 6 22 G 14 40 54 075824 G 3 0 3 A 39 46 85 075898 G 26 10 36 A 14 36 50 076296 C 0 8 8 T 48 36 84 076376 G 0 1 1 C 48 43 91 076678 C 19 7 26 T 9 31 40 077781 A 0 8 8 G 48 38 86 077912 C 1 0 1 T 47 46 93 078024 T 0 1 1 C 48 45 93 078043 A 1 19 20 G 47 27 74 078183 A 8 22 30 G 36 24 60 078295 T 1 1 2 C 43 45 88 078552 T 0 1 1 C 44 41 85 078580 C 4 9 13 G 40 33 73 078703 C 0 1 1 A 44 41 85 078998 T 2 4 6 C 46 42 88 079131 G 1 0 1 A 47 46 93 079697 A 0 1 1 G 46 45 91 079953 T 10 22 32 C 36 24 60 079997 C 5 3 8 A 39 41 80 080525 A 11 6 17 G 37 40 77 080580 A 4 0 4 G 44 46 90 080596 A 21 14 35 G 27 32 59 080753 + 28 18 46 - 20 28 48 080892 C 1 0 1 G 47 46 93 080948 C 21 16 37 T 27 30 57 081067 G 7 4 11 A 41 42 83 081457 A 0 1 1 G 48 45 93 081994 C 1 0 1 T 47 46 93 082005 A 2 4 6 G 46 42 88 082114 G 1 0 1 C 47 46 93 082203 G 3 0 3 C 45 46 91 082216 A 4 0 4 G 44 46 90 085386 A 3 0 3 G 33 46 79 085609 T 1 0 1 C 43 46 89 085716 T 0 1 1 C 46 45 91 086375 G 9 0 9 A 31 46 77 086534 A 2 0 2 G 36 46 82 086644 C 0 4 4 A 38 42 80 086729 G 11 6 17 T 27 40 67 086878 C 6 10 16 T 32 36 68 086927 T 6 20 26 G 32 24 56 086952 - 3 6 9 + 35 40 75 087151 - 0 2 2 + 38 38 76 088219 T 8 10 18 C 38 36 74 088390 C 4 0 4 T 42 46 88 089067 C 2 4 6 G 40 40 80 090717 - 5 1 6 + 43 45 88 090869 C 15 22 37 T 33 24 57 091135 T 0 4 4 G 48 42 90 091198 G 1 0 1 C 47 46 93 091355 A 21 17 38 G 25 29 54 091400 G 4 0 4 A 42 46 88 091528 G 21 17 38 A 25 29 54 091555 G 0 4 4 A 46 42 88 091915 G 0 2 2 A 46 44 90 092518 A 17 26 43 G 23 20 43 093010 G 1 0 1 A 41 46 87 093353 T 0 1 1 C 42 45 87 093725 C 0 4 4 T 46 42 88 093904 A 1 0 1 G 45 46 91 093997 - 1 0 1 + 45 46 91 094041 T 21 17 38 G 27 29 56 094134 A 18 26 44 G 28 18 46 094285 T 1 0 1 C 45 44 89 094362 - 13 22 35 + 33 22 55 094447 C 1 0 1 T 41 42 83 094491 T 0 4 4 A 42 38 80 094887 C 24 17 41 T 22 29 51 094944 C 0 1 1 T 46 45 91 095071 A 2 0 2 G 44 46 90 095239 G 2 0 2 A 44 46 90 095293 T 2 0 2 C 44 46 90 095828 C 2 0 2 A 42 46 88 095942 G 2 0 2 A 46 46 92 095972 G 2 3 5 T 46 43 89 096705 G 13 5 18 A 23 39 62 097460 - 0 1 1 + 44 45 89 098641 A 2 3 5 G 46 43 89 099012 T 3 0 3 A 43 46 89 099361 A 2 0 2 T 46 46 92 099382 T 0 1 1 C 48 45 93 099453 G 28 13 41 A 20 33 53 099655 T 0 1 1 C 46 45 91 099669 A 0 3 3 T 46 43 89 099954 G 1 0 1 A 45 46 91 100216 T 1 0 1 C 47 46 93 100275 C 0 4 4 T 48 42 90 100309 G 1 0 1 T 47 46 93 100709 A 1 0 1 C 33 46 79 100837 + 1 0 1 - 35 46 81 100954 + 24 16 40 - 12 30 42 101267 + 12 9 21 - 30 37 67 101721 - 1 0 1 + 37 40 77 101780 T 1 0 1 A 37 40 77 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 012012: t 016897: c 017995: T 025053: TT 052269: Tt 053000: a 053167: t 068648: aa 080753: g 086952: g 087151: a 090717: GT 093997: GTT 094362: ATA 097460: tcaa 100837: tca 100954: aagt 101267: aa 101721: agaa Tri-allelic sites: Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop Allele3 AD-pop ED-pop Total-pop 000120 A 5 1 6 C 0 13 13 G 43 32 75