Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000054 G 1 7 8 T 29 29 58 000147 T 2 0 2 G 34 40 74 000252 G 2 0 2 A 34 40 74 000374 C 1 3 4 T 35 37 72 001555 T 1 1 2 C 45 41 86 002076 T 7 5 12 C 35 33 68 002107 A 1 0 1 G 41 40 81 002186 C 6 12 18 G 38 26 64 002382 T 1 0 1 C 45 46 91 002407 T 2 3 5 C 44 43 87 002499 T 4 0 4 G 42 46 88 002767 G 6 0 6 T 40 46 86 003035 A 0 1 1 G 46 45 91 003198 T 4 0 4 A 42 46 88 003354 - 1 0 1 + 45 46 91 004160 C 1 0 1 T 43 40 83 025592 G 14 8 22 C 30 38 68 025819 G 14 8 22 C 32 38 70 025896 G 6 0 6 A 40 46 86 025947 C 14 8 22 T 32 38 70 026233 A 14 8 22 T 32 38 70 026614 A 12 6 18 G 34 40 74 026867 - 12 6 18 + 34 40 74 026948 G 1 0 1 A 45 44 89 026955 G 1 0 1 A 45 44 89 027032 G 3 2 5 T 43 40 83 027447 G 7 0 7 A 39 44 83 028419 - 13 9 22 + 33 35 68 028450 - 0 1 1 + 46 45 91 028769 G 2 0 2 C 44 46 90 028779 A 13 8 21 G 33 38 71 028817 C 13 8 21 T 33 38 71 065139 A 1 0 1 C 47 46 93 065270 A 1 0 1 G 47 46 93 065413 G 0 1 1 C 48 45 93 065746 G 2 3 5 C 46 41 87 065938 T 1 0 1 C 47 44 91 067222 A 20 0 20 G 28 46 74 067461 T 31 3 34 C 17 43 60 067626 A 0 3 3 T 48 43 91 067854 G 2 0 2 A 46 46 92 069064 G 3 0 3 T 45 46 91 069208 G 7 25 32 A 41 21 62 069352 C 0 1 1 T 48 45 93 069399 T 2 5 7 C 46 41 87 069465 G 11 3 14 A 37 43 80 069575 A 31 3 34 G 17 43 60 074034 T 0 1 1 C 48 45 93 075095 C 11 13 24 T 33 27 60 075161 G 5 0 5 A 41 44 85 075203 C 1 0 1 T 45 42 87 077605 - 10 12 22 + 36 28 64 078135 + 11 15 26 - 37 29 66 078330 T 1 0 1 C 47 44 91 079045 T 1 0 1 C 47 42 89 080695 A 6 0 6 T 40 46 86 080884 A 18 17 35 G 30 29 59 080889 T 1 0 1 C 47 46 93 081125 A 1 0 1 G 45 46 91 081272 C 6 0 6 T 42 46 88 081364 A 1 0 1 G 47 46 93 081427 T 3 0 3 C 45 46 91 081511 G 0 1 1 A 48 45 93 081556 T 5 0 5 G 43 46 89 082134 G 0 3 3 A 48 41 89 088446 C 10 16 26 T 34 28 62 088660 A 18 0 18 G 30 46 76 088664 T 0 1 1 C 48 45 93 088676 T 5 0 5 G 43 46 89 088789 G 1 0 1 A 45 42 87 088826 G 6 0 6 A 40 42 82 091203 T 1 1 2 C 47 43 90 091211 T 0 1 1 C 48 43 91 091219 T 9 22 31 C 39 22 61 091366 C 1 0 1 T 47 42 89 091698 A 1 0 1 C 47 44 91 095094 T 0 1 1 C 48 45 93 095644 C 0 1 1 T 48 45 93 095719 C 6 0 6 G 42 46 88 095846 + 11 22 33 - 17 24 41 095872 C 4 5 9 T 42 41 83 097399 T 14 20 34 C 30 20 50 097891 A 3 0 3 G 43 44 87 102067 G 11 17 28 A 35 23 58 102344 A 1 0 1 G 47 46 93 102409 G 4 1 5 A 44 45 89 102582 A 1 0 1 G 45 46 91 102674 T 7 16 23 C 39 30 69 102804 T 3 0 3 C 43 46 89 102815 G 17 0 17 A 29 46 75 103895 C 0 2 2 T 48 42 90 104149 T 4 1 5 A 42 43 85 104167 G 7 16 23 A 39 28 67 104394 C 18 0 18 T 30 46 76 104893 T 1 0 1 C 45 46 91 104971 T 0 1 1 C 46 45 91 106672 * 106693 A 4 0 4 C 44 38 82 106874 T 7 0 7 A 41 42 83 107210 A 7 19 26 G 37 19 56 107333 T 6 0 6 C 42 44 86 107501 T 0 2 2 C 48 44 92 109837 G 1 5 6 C 45 41 86 109996 A 6 0 6 G 38 46 84 110133 C 2 0 2 G 42 46 88 110260 G 15 22 37 A 31 24 55 110274 T 4 12 16 A 42 32 74 110275 A 4 12 16 C 42 32 74 110402 A 0 1 1 G 46 45 91 110440 T 4 1 5 C 42 45 87 110578 A 4 14 18 G 42 32 74 110622 A 5 16 21 G 33 18 51 111607 A 1 0 1 C 47 44 91 111675 G 1 0 1 T 47 44 91 111911 G 1 0 1 A 47 44 91 111926 A 0 4 4 G 48 40 88 111984 C 6 16 22 T 42 28 70 114106 G 15 23 38 A 33 21 54 114152 T 18 0 18 G 30 44 74 115177 G 6 0 6 T 40 46 86 115330 A 10 17 27 G 34 25 59 115432 T 19 22 41 G 25 20 45 116255 T 8 22 30 C 36 22 58 116256 T 0 2 2 G 42 42 84 116442 G 1 8 9 A 39 34 73 118406 C 6 16 22 A 42 28 70 118429 T 4 1 5 C 44 43 87 118445 C 0 1 1 G 48 43 91 118603 G 9 24 33 A 39 22 61 119067 A 4 1 5 G 44 45 89 119091 G 9 24 33 A 37 22 59 119752 G 9 22 31 T 39 22 61 120563 A 22 0 22 G 22 32 54 120741 A 3 0 3 G 37 42 79 120898 A 4 1 5 G 42 43 85 121097 C 24 0 24 T 24 46 70 121292 T 4 1 5 C 44 43 87 121539 G 7 17 24 A 41 29 70 121593 C 0 2 2 T 48 44 92 121625 C 1 0 1 T 47 46 93 122052 T 0 1 1 C 48 45 93 122127 T 11 21 32 G 37 25 62 122158 C 0 1 1 T 48 45 93 122250 A 17 0 17 C 31 44 75 122282 C 11 21 32 G 37 23 60 122392 A 0 2 2 C 48 42 90 122465 A 4 5 9 G 36 39 75 122562 G 8 21 29 A 34 21 55 122693 A 4 9 13 G 30 19 49 122766 C 5 8 13 A 29 12 41 123937 C 9 22 31 G 37 20 57 127599 T 5 10 15 C 35 30 65 127634 G 9 19 28 A 35 21 56 129056 G 1 0 1 T 47 44 91 129434 T 5 13 18 A 37 31 68 129666 - 3 0 3 + 37 40 77 129719 A 0 1 1 G 46 45 91 129924 G 1 0 1 A 43 44 87 130041 G 4 13 17 A 42 31 73 130043 T 5 13 18 A 41 31 72 130061 A 1 0 1 G 45 44 89 130808 T 1 0 1 C 47 44 91 133724 T 2 0 2 C 40 46 86 133796 T 0 1 1 G 42 45 87 134148 G 0 1 1 A 48 45 93 134215 A 6 11 17 G 42 35 77 134240 T 11 0 11 C 37 46 83 134730 - 31 8 39 + 15 36 51 135547 G 0 1 1 A 46 45 91 135776 G 4 13 17 A 34 31 65 136171 A 0 3 3 T 42 43 85 138088 A 6 13 19 C 40 31 71 138556 A 0 2 2 G 48 44 92 138814 G 9 25 34 A 39 21 60 139033 G 5 13 18 A 43 33 76 139090 G 5 13 18 A 43 33 76 139196 C 0 1 1 T 48 45 93 139315 A 3 5 8 G 45 41 86 139383 A 4 1 5 G 44 43 87 139539 T 0 1 1 C 48 43 91 139644 T 4 12 16 C 44 32 76 139728 G 1 0 1 A 47 44 91 140143 C 0 1 1 T 38 45 83 140213 G 9 0 9 A 29 44 73 140446 G 1 0 1 A 27 40 67 142619 G 12 0 12 C 32 40 72 142643 A 1 0 1 G 43 40 83 142839 C 17 15 32 A 29 27 56 142914 G 10 0 10 A 34 40 74 143263 A 1 0 1 G 45 38 83 144462 G 5 8 13 A 35 28 63 144471 T 20 15 35 C 20 21 41 144695 A 1 0 1 G 43 38 81 147449 T 0 1 1 C 44 33 77 147516 G 7 6 13 C 39 34 73 147586 A 8 6 14 G 38 30 68 148157 T 5 6 11 C 43 40 83 148495 - 1 0 1 + 47 46 93 148527 T 1 0 1 C 47 46 93 148594 T 0 3 3 C 48 43 91 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 003354: T 026867: GTAA 028419: AATTAATT 028450: GA 077605: T 078135: T 095846: T 129666: A 134730: G 148495: C Tri-allelic sites: Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop Allele3 AD-pop ED-pop Total-pop 106672 A 2 2 4 C 4 0 4 G 40 36 76