Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000212 A 1 0 1 G 45 44 89 000239 T 9 6 15 C 37 36 73 000380 G 9 7 16 T 35 37 72 000581 C 1 0 1 T 47 46 93 000677 T 6 14 20 C 42 32 74 000684 A 11 9 20 T 37 37 74 000700 C 1 0 1 T 47 46 93 000705 - 22 21 43 + 26 25 51 000719 A 1 0 1 C 47 46 93 000978 T 3 12 15 C 43 32 75 001060 A 4 0 4 T 40 44 84 001496 G 12 9 21 A 36 37 73 001510 G 11 9 20 T 37 37 74 001645 C 1 0 1 A 45 46 91 001821 C 12 9 21 T 32 33 65 002115 T 0 9 9 A 46 37 83 002375 A 14 9 23 G 28 37 65 002605 A 1 0 1 G 43 46 89 002812 C 0 1 1 G 44 45 89 002981 T 4 0 4 C 38 46 84 003000 A 2 0 2 G 42 46 88 003169 T 1 0 1 A 31 40 71 004074 T 1 0 1 C 47 46 93 004380 T 4 0 4 C 44 46 90 005686 T 2 1 3 C 44 43 87 005734 T 13 9 22 C 35 35 70 005815 C 13 9 22 T 35 35 70 005913 A 13 10 23 G 35 36 71 006449 T 0 2 2 C 48 44 92 006542 T 14 10 24 C 34 36 70 006585 - 4 1 5 + 44 45 89 007239 G 4 1 5 A 38 41 79 007668 G 1 0 1 T 41 42 83 007802 T 1 0 1 A 41 42 83 007952 - 8 0 8 + 38 46 84 008068 G 4 0 4 T 42 46 88 008096 T 24 22 46 C 22 24 46 008338 G 4 1 5 C 38 45 83 008499 - 2 0 2 + 44 46 90 008514 - 1 0 1 + 45 46 91 008743 C 4 1 5 A 38 45 83 008778 T 18 20 38 G 24 26 50 009251 T 1 0 1 C 47 46 93 009469 G 1 0 1 C 45 46 91 009719 G 0 1 1 A 46 45 91 009827 A 3 14 17 G 43 32 75 010245 G 12 20 32 A 32 22 54 010256 G 1 0 1 A 43 42 85 010319 T 4 1 5 G 40 41 81 010340 C 8 7 15 A 36 35 71 010362 G 1 0 1 A 43 42 85 011006 G 1 0 1 A 43 46 89 011527 C 4 1 5 T 38 45 83 011534 - 1 0 1 + 43 46 89 011541 G 9 9 18 C 35 37 72 011838 C 5 16 21 T 41 28 69 011879 C 1 0 1 T 45 44 89 011967 - 4 1 5 + 42 41 83 012082 A 2 14 16 T 36 28 64 012525 C 4 1 5 A 44 45 89 012788 C 22 19 41 T 24 25 49 013102 A 2 0 2 C 44 42 86 013122 T 9 0 9 C 37 42 79 013194 G 1 0 1 A 47 44 91 013350 A 0 1 1 G 48 45 93 015868 T 4 1 5 G 42 43 85 016307 G 12 22 34 A 34 20 54 016557 T 13 23 36 C 33 23 56 017364 T 4 1 5 G 44 35 79 017780 G 1 0 1 A 47 46 93 017810 G 10 0 10 T 38 46 84 017828 A 1 0 1 G 47 46 93 024836 G 0 8 8 T 44 36 80 025873 - 1 0 1 + 47 46 93 025935 T 4 1 5 A 44 45 89 026022 A 4 1 5 G 42 45 87 026060 G 8 0 8 T 38 46 84 026609 T 4 1 5 G 42 37 79 026991 C 0 2 2 G 42 44 86 027163 A 1 0 1 C 41 46 87 027593 C 1 0 1 T 47 46 93 027820 A 4 1 5 G 44 41 85 027976 T 20 20 40 C 28 26 54 028277 A 1 0 1 T 47 46 93 028393 T 1 0 1 G 47 46 93 028975 C 4 1 5 A 44 45 89 029066 C 4 0 4 T 44 46 90 029128 G 0 1 1 A 42 35 77 029147 T 9 0 9 G 31 36 67 029587 A 0 1 1 C 42 43 85 030029 A 9 0 9 G 35 46 81 030056 G 1 0 1 A 43 46 89 030588 G 20 20 40 A 28 26 54 030785 T 2 2 4 A 46 44 90 031011 A 14 1 15 G 34 45 79 031083 + 1 0 1 - 47 46 93 031084 G 1 0 1 A 45 46 91 031281 G 0 1 1 A 48 45 93 031553 T 0 6 6 C 48 40 88 031780 A 3 0 3 C 45 46 91 031942 A 1 0 1 T 47 46 93 031966 T 0 1 1 A 48 45 93 032039 G 10 0 10 A 38 46 84 032529 G 1 0 1 C 45 40 85 032555 G 2 0 2 A 44 44 88 032706 T 10 8 18 C 36 26 62 032923 C 4 1 5 A 42 43 85 033034 A 4 1 5 G 42 43 85 033075 A 0 2 2 G 46 42 88 033107 A 19 22 41 C 27 22 49 033900 C 10 0 10 T 38 44 82 034191 C 3 1 4 T 45 39 84 034719 C 0 1 1 T 48 43 91 034784 A 4 1 5 G 44 43 87 034803 G 4 0 4 A 44 44 88 035231 A 20 22 42 C 28 24 52 035354 A 7 0 7 G 41 46 87 035412 A 1 0 1 G 47 46 93 035533 C 4 1 5 T 44 45 89 035917 T 20 15 35 C 28 23 51 035981 T 4 1 5 A 44 41 85 036561 A 4 1 5 T 44 45 89 036625 G 10 9 19 A 38 37 75 036763 A 4 1 5 G 44 45 89 036799 C 14 1 15 T 34 45 79 037120 A 1 5 6 G 47 41 88 037122 G 1 0 1 T 47 46 93 037246 A 1 0 1 G 47 46 93 037261 A 4 0 4 G 42 46 88 037392 A 4 1 5 G 42 43 85 037590 G 13 23 36 A 29 23 52 038346 G 1 0 1 A 41 46 87 038810 A 3 0 3 C 45 46 91 038883 C 0 1 1 T 48 45 93 038981 C 1 0 1 T 47 46 93 039236 T 14 23 37 C 34 23 57 039500 * 039548 C 10 0 10 T 38 46 84 039676 C 3 14 17 T 45 32 77 039752 G 1 0 1 C 47 46 93 039900 G 13 23 36 A 35 23 58 040512 G 4 14 18 A 44 32 76 040704 C 1 0 1 G 47 46 93 040907 T 1 0 1 A 47 44 91 041102 A 1 0 1 G 47 46 93 041380 G 14 2 16 C 34 44 78 041732 T 2 0 2 G 44 46 90 041740 G 4 1 5 A 42 45 87 041808 T 4 1 5 C 44 45 89 042020 T 1 0 1 C 47 46 93 042039 T 7 0 7 A 41 46 87 042350 G 1 0 1 C 45 46 91 042400 T 7 0 7 C 39 46 85 042471 A 3 14 17 G 43 32 75 042538 + 4 1 5 - 44 45 89 042896 T 4 1 5 C 38 39 77 043172 A 1 0 1 G 41 40 81 043610 A 3 1 4 C 39 37 76 043756 A 1 0 1 T 43 38 81 043961 T 1 0 1 C 43 38 81 044027 G 8 0 8 C 36 42 78 044250 T 1 0 1 G 43 44 87 044275 C 4 1 5 A 40 43 83 044419 T 8 8 16 G 36 36 72 044733 C 4 1 5 T 40 45 85 045023 C 4 1 5 G 44 41 85 045169 G 1 0 1 A 47 42 89 045186 A 3 13 16 G 45 29 74 045276 A 4 1 5 T 44 41 85 045358 C 4 1 5 G 44 41 85 045486 T 0 2 2 G 48 40 88 045966 G 20 20 40 A 28 26 54 046141 G 1 0 1 A 47 46 93 046279 C 1 0 1 G 47 46 93 046834 T 0 2 2 C 48 42 90 046845 T 1 0 1 C 47 44 91 046879 T 14 1 15 G 34 43 77 046921 A 10 9 19 G 38 35 73 046936 T 10 0 10 G 38 44 82 047145 T 4 1 5 C 44 45 89 047216 A 0 1 1 G 46 45 91 047397 G 1 0 1 A 47 46 93 047579 T 1 0 1 C 47 46 93 047599 A 4 1 5 C 44 45 89 047638 A 4 1 5 G 44 45 89 047845 C 4 1 5 A 44 45 89 048174 G 0 1 1 A 48 45 93 049368 - 4 1 5 + 42 45 87 049569 A 4 1 5 T 44 45 89 049725 + 1 0 1 - 47 46 93 049735 T 3 14 17 A 45 32 77 050281 - 10 8 18 + 38 36 74 050382 C 6 0 6 A 36 44 80 050400 T 6 0 6 C 36 44 80 050839 A 1 0 1 T 47 46 93 050942 T 4 1 5 C 44 45 89 050943 A 0 2 2 G 48 44 92 050962 C 4 1 5 G 44 45 89 051333 C 1 0 1 T 47 46 93 051391 A 14 1 15 G 34 45 79 051498 G 4 1 5 A 44 45 89 051517 G 0 1 1 A 48 45 93 052091 A 9 0 9 G 39 44 83 052187 A 0 1 1 G 48 41 89 052290 C 4 1 5 T 44 39 83 052338 G 2 0 2 A 46 38 84 052623 - 1 0 1 + 47 42 89 052808 G 4 1 5 A 42 43 85 052870 C 2 0 2 G 46 44 90 053071 G 0 2 2 A 48 42 90 053093 A 4 1 5 G 44 43 87 053226 G 0 1 1 A 48 45 93 053379 G 10 0 10 A 36 40 76 053556 A 20 19 39 G 28 23 51 053954 C 4 1 5 T 42 41 83 054048 C 1 0 1 T 47 46 93 054327 A 2 0 2 G 46 44 90 054397 G 4 1 5 A 44 45 89 054470 A 11 0 11 G 35 46 81 054513 T 14 1 15 C 34 45 79 054699 T 1 0 1 C 45 46 91 054786 G 12 23 35 T 34 23 57 054787 A 1 0 1 G 45 46 91 055069 A 0 1 1 G 46 41 87 055146 A 0 4 4 G 46 38 84 055183 A 19 19 38 G 27 25 52 055363 A 1 0 1 G 47 44 91 055645 C 4 1 5 T 44 43 87 055876 - 4 1 5 + 40 41 81 056279 G 3 0 3 A 41 46 87 056905 T 4 1 5 C 44 45 89 057100 G 10 0 10 A 38 46 84 057266 C 2 0 2 A 46 46 92 057456 A 1 0 1 T 47 46 93 057807 T 1 0 1 G 47 46 93 057965 C 0 2 2 T 48 44 92 058083 A 4 1 5 G 44 45 89 058274 A 4 1 5 G 44 45 89 058833 G 3 1 4 A 45 45 90 059727 A 1 0 1 G 47 46 93 059789 A 0 9 9 G 48 37 85 060671 C 1 0 1 A 47 44 91 060718 T 1 0 1 C 47 44 91 060784 C 1 0 1 T 47 44 91 060794 A 1 0 1 G 47 44 91 060860 G 4 1 5 A 44 43 87 061224 A 3 0 3 G 45 46 91 061568 - 1 0 1 + 43 46 89 061741 T 1 0 1 C 41 46 87 062113 G 1 0 1 A 45 44 89 062550 A 3 1 4 G 45 45 90 063016 T 4 1 5 A 44 45 89 063042 G 1 0 1 A 47 46 93 063049 G 4 1 5 A 44 45 89 063681 C 4 1 5 T 44 45 89 063809 T 4 1 5 C 44 45 89 063981 A 1 0 1 G 41 46 87 064415 G 3 1 4 A 39 45 84 064447 C 3 1 4 T 39 45 84 065983 G 10 8 18 A 38 36 74 066260 G 0 2 2 A 48 42 90 066319 T 1 0 1 C 41 44 85 066357 C 3 1 4 T 39 43 82 068375 C 4 1 5 T 44 43 87 068880 C 14 1 15 G 34 45 79 069393 A 1 0 1 G 47 46 93 069856 - 1 0 1 + 33 42 75 070769 A 1 0 1 T 43 44 87 070882 A 1 0 1 G 47 46 93 071325 C 9 8 17 T 35 36 71 071606 A 1 0 1 T 47 46 93 071665 C 4 1 5 T 44 45 89 071863 T 4 1 5 C 42 43 85 072705 C 1 0 1 A 45 46 91 073166 A 1 0 1 G 41 40 81 073285 T 6 0 6 G 40 46 86 073352 - 1 0 1 + 47 46 93 073522 T 15 3 18 G 33 43 76 073625 T 3 1 4 C 45 45 90 073627 G 2 0 2 A 46 46 92 073683 T 6 0 6 G 42 46 88 073838 T 24 10 34 C 22 36 58 073955 A 4 1 5 G 42 45 87 074142 G 1 0 1 A 47 46 93 074609 G 2 1 3 A 46 45 91 075161 - 11 9 20 + 35 37 72 076330 A 21 3 24 G 27 41 68 076451 G 1 0 1 T 47 44 91 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000705: t 006585: TC 007952: c 008499: ct 008514: t 011534: t 011967: g 025873: c 031083: a 042538: at 049368: aaaagt 049725: gctg 050281: a 052623: agtgtcctgctagtaaaggggt 055876: a 061568: catct 069856: t 073352: gcaaa 075161: gat Tri-allelic sites: Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop Allele3 AD-pop ED-pop Total-pop 039500 A 0 1 1 C 8 0 8 T 40 45 85