Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000680 AA 0 0 0 AG 0 2 2 GG 20 18 38 0.000 0.055 0.026 000920 -- 0 0 0 +- 1 0 1 ++ 22 23 45 0.011 0.000 0.006 000922 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 000924 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 001000 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 001246 AA 8 17 25 AC 12 4 16 CC 4 2 6 0.020 3.584 1.629 001448 CC 0 0 0 CG 2 0 2 GG 22 23 45 0.045 0.000 0.022 001554 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 001678 CC 0 0 0 CT 10 11 21 TT 13 12 25 1.775 2.272 4.024 001741 AA 2 2 4 AC 7 4 11 CC 14 17 31 0.616 3.584 3.363 001750 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 001948 AA 2 2 4 AG 10 4 14 GG 11 17 28 0.017 3.584 1.232 002025 -- 0 0 0 +- 11 11 22 ++ 12 12 24 2.272 2.272 4.544 002048 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 002155 AA 0 0 0 AG 0 9 9 GG 24 14 38 0.000 1.361 0.527 002364 -- 22 20 42 +- 1 2 3 ++ 0 0 0 0.011 0.050 0.054 002453 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 003035 CC 0 1 1 CT 4 11 15 TT 20 11 31 0.198 0.741 0.280 003628 CC 12 17 29 CT 10 4 14 TT 2 2 4 0.002 3.584 1.345 004205 -- 23 21 44 +- 0 2 2 ++ 0 0 0 0.000 0.048 0.023 004246 -- 0 0 0 +- 1 0 1 ++ 23 23 46 0.011 0.000 0.005 004528 -- 0 0 0 +- 6 0 6 ++ 17 22 39 0.517 0.000 0.230 004644 CC 2 2 4 CT 9 5 14 TT 6 15 21 0.248 2.001 0.504 004715 AA 1 3 4 AG 6 8 14 GG 10 11 21 0.006 0.577 0.504 004938 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 006172 CC 23 22 45 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 006207 CC 24 13 37 CT 0 9 9 TT 0 0 0 0.000 1.455 0.541 006323 AA 12 12 24 AG 10 7 17 GG 1 3 4 0.374 1.223 0.154 006955 GG 0 0 0 GT 1 0 1 TT 21 23 44 0.012 0.000 0.006 006998 AA 1 3 4 AT 9 7 16 TT 13 13 26 0.130 1.431 0.442 007238 -- 1 0 1 +- 3 0 3 ++ 17 22 39 2.136 0.000 5.665 007382 CC 23 21 44 CT 0 2 2 TT 0 0 0 0.000 0.048 0.023 007447 CC 14 14 28 CT 9 9 18 TT 0 0 0 1.361 1.361 2.722 008018 AA 16 11 27 AG 7 10 17 GG 0 2 2 0.741 0.017 0.110 008054 CC 0 0 0 CT 3 0 3 TT 20 23 43 0.112 0.000 0.052 008831 AA 19 21 40 AG 1 0 1 GG 0 0 0 0.013 0.000 0.006 009358 CC 18 21 39 CT 2 0 2 TT 0 0 0 0.055 0.000 0.026 009359 AA 9 14 23 AG 8 5 13 GG 3 2 5 0.292 1.802 1.885 009513 AA 24 20 44 AG 0 3 3 GG 0 0 0 0.000 0.112 0.051 009569 AA 0 0 0 AT 0 2 2 TT 24 20 44 0.000 0.050 0.023 009572 AA 24 20 44 AC 0 2 2 CC 0 0 0 0.000 0.050 0.023 009720 CC 19 22 41 CT 2 0 2 TT 0 0 0 0.053 0.000 0.024 009762 -- 0 0 0 +- 0 1 1 ++ 21 21 42 0.000 0.012 0.006 009829 AA 2 6 8 AT 9 5 14 TT 7 11 18 0.126 5.965 2.567 009984 CC 20 10 30 CT 3 8 11 TT 1 3 4 2.617 0.429 3.187 010132 AA 21 22 43 AG 3 0 3 GG 0 0 0 0.107 0.000 0.052 010481 AA 14 15 29 AG 10 8 18 GG 0 0 0 1.662 1.019 2.636 010514 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 010621 AA 13 11 24 AG 9 6 15 GG 2 6 8 0.061 4.707 3.633 010704 AA 0 0 0 AT 14 3 17 TT 10 20 30 4.069 0.112 2.291 010954 AA 13 11 24 AC 9 6 15 CC 2 6 8 0.061 4.707 3.633 011546 CC 0 0 0 CT 10 8 18 TT 13 15 28 1.775 1.019 2.722 011557 AA 0 0 0 AT 10 8 18 TT 13 15 28 1.775 1.019 2.722 011585 AA 0 6 6 AC 4 6 10 CC 19 11 30 0.209 4.707 7.456 011648 GG 13 15 28 GT 10 8 18 TT 0 0 0 1.775 1.019 2.722 011745 CC 0 0 0 CT 2 0 2 TT 22 23 45 0.045 0.000 0.022 011750 CC 21 11 32 CG 3 9 12 GG 0 3 3 0.107 0.277 1.447 012267 AA 21 11 32 AG 2 10 12 GG 0 2 2 0.048 0.017 0.390 012374 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 012427 AA 3 7 10 AG 14 9 23 GG 7 7 14 0.960 1.087 0.009 012670 AA 20 23 43 AC 4 0 4 CC 0 0 0 0.198 0.000 0.093 012963 GG 0 0 0 GT 11 9 20 TT 11 14 25 2.444 1.361 3.673 013069 AA 0 0 0 AC 5 0 5 CC 18 23 41 0.342 0.000 0.152 013309 CC 13 14 27 CT 11 9 20 TT 0 0 0 2.121 1.361 3.433 013311 CC 24 14 38 CG 0 9 9 GG 0 0 0 0.000 1.361 0.527 013526 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 013693 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.011 0.000 0.005 013909 AA 0 0 0 AC 10 6 16 CC 14 15 29 1.662 0.583 2.104 014015 AA 4 7 11 AT 15 7 22 TT 5 9 14 1.526 3.439 0.169 014312 AA 15 22 37 AC 3 0 3 CC 0 0 0 0.149 0.000 0.061 014587 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 015096 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.011 0.000 0.005 015143 AA 5 7 12 AG 16 9 25 GG 3 7 10 2.818 1.087 0.203 015513 -- 0 2 2 +- 3 9 12 ++ 21 11 32 0.107 0.007 0.390 015888 CC 0 0 0 CT 12 9 21 TT 12 14 26 2.667 1.361 3.889 016091 CC 0 0 0 CG 9 6 15 GG 13 14 27 1.455 0.623 1.985 016431 AA 24 22 46 AT 0 1 1 TT 0 0 0 0.000 0.011 0.005 016531 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 017015 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 017131 AA 0 6 6 AG 9 6 15 GG 14 11 25 1.361 4.707 2.100 017484 GG 19 16 35 GT 1 5 6 TT 0 0 0 0.013 0.383 0.256 017599 CC 0 0 0 CT 1 0 1 TT 19 21 40 0.013 0.000 0.006 017661 AA 12 13 25 AT 7 8 15 TT 0 0 0 0.969 1.163 2.130 017811 -- 6 7 13 +- 14 9 23 ++ 3 7 10 1.308 1.087 0.001 017976 AA 0 0 0 AG 0 2 2 GG 22 10 32 0.000 0.099 0.031 018031 -- 0 2 2 +- 3 10 13 ++ 20 10 30 0.112 0.050 0.147 018058 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 018264 AA 0 0 0 AG 9 9 18 GG 9 14 23 2.000 1.361 3.243 018563 -- 0 2 2 +- 1 4 5 ++ 20 15 35 0.012 3.070 5.994 019665 GG 13 14 27 GT 11 9 20 TT 0 0 0 2.121 1.361 3.433 019714 CC 0 0 0 CG 11 9 20 GG 13 14 27 2.121 1.361 3.433 019838 CC 24 21 45 CT 0 2 2 TT 0 0 0 0.000 0.048 0.022 019905 CC 0 0 0 CG 0 2 2 GG 24 21 45 0.000 0.048 0.022 019926 AA 0 0 0 AG 1 1 2 GG 23 22 45 0.011 0.011 0.022 020033 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 020158 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 020203 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 020541 AA 21 23 44 AG 3 0 3 GG 0 0 0 0.107 0.000 0.051 020789 AA 0 0 0 AG 11 9 20 GG 13 14 27 2.121 1.361 3.433 020843 AA 24 21 45 AG 0 2 2 GG 0 0 0 0.000 0.048 0.022 021122 AA 21 11 32 AC 3 10 13 CC 0 2 2 0.107 0.017 0.208 021168 CC 20 23 43 CT 4 0 4 TT 0 0 0 0.198 0.000 0.093 021176 CC 20 23 43 CT 4 0 4 TT 0 0 0 0.198 0.000 0.093 021449 AA 0 0 0 AG 10 8 18 GG 13 15 28 1.775 1.019 2.722 021820 AA 21 11 32 AG 2 9 11 GG 0 3 3 0.048 0.277 1.957 022443 CC 11 13 24 CT 10 9 19 TT 0 0 0 2.051 1.455 3.458 022505 CC 20 22 42 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 022692 CC 0 0 0 CT 1 0 1 TT 21 23 44 0.012 0.000 0.006 022839 CC 0 0 0 CT 1 0 1 TT 21 23 44 0.012 0.000 0.006 023430 AA 0 0 0 AC 12 8 20 CC 12 14 26 2.667 1.086 3.549 023701 AA 0 0 0 AG 11 9 20 GG 13 14 27 2.121 1.361 3.433 023837 AA 0 0 0 AG 3 0 3 GG 18 23 41 0.124 0.000 0.055 023956 CC 12 14 26 CG 11 9 20 GG 0 0 0 2.272 1.361 3.549 024095 CC 23 22 45 CT 1 1 2 TT 0 0 0 0.011 0.011 0.022 024239 CC 19 23 42 CT 5 0 5 TT 0 0 0 0.324 0.000 0.148 024499 AA 22 22 44 AT 1 0 1 TT 0 0 0 0.011 0.000 0.006 024561 AA 0 0 0 AG 10 9 19 GG 13 13 26 1.775 1.455 3.223 024992 AA 23 22 45 AC 0 1 1 CC 0 0 0 0.000 0.011 0.006 025024 AA 20 22 42 AT 1 0 1 TT 0 0 0 0.012 0.000 0.006 025147 AA 0 0 0 AG 0 1 1 GG 23 22 45 0.000 0.011 0.006 025424 CC 18 22 40 CT 4 0 4 TT 0 0 0 0.220 0.000 0.100 025439 AA 0 0 0 AG 1 0 1 GG 21 22 43 0.012 0.000 0.006 025487 CC 0 0 0 CT 3 0 3 TT 19 22 41 0.118 0.000 0.055 025527 AA 0 0 0 AG 10 8 18 GG 12 14 26 1.903 1.086 2.909 025578 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 026331 GG 0 0 0 GT 0 2 2 TT 21 20 41 0.000 0.050 0.024 026420 CC 0 0 0 CT 1 0 1 TT 22 22 44 0.011 0.000 0.006 026523 CC 0 2 2 CT 3 10 13 TT 21 11 32 0.107 0.017 0.208 026778 -- 0 0 0 +- 9 8 17 ++ 10 12 22 1.830 1.250 3.029 027254 AA 12 14 26 AC 11 9 20 CC 0 0 0 2.272 1.361 3.549 027311 AA 12 14 26 AG 11 9 20 GG 0 0 0 2.272 1.361 3.549 027897 -- 13 14 27 +- 11 9 20 ++ 0 0 0 2.121 1.361 3.433 027982 AA 4 9 13 AG 15 7 22 GG 3 7 10 2.954 3.439 0.014 028077 CC 4 9 13 CT 16 7 23 TT 3 7 10 3.569 3.439 0.001 028098 AA 6 8 14 AT 12 6 18 TT 3 9 12 0.583 5.239 1.428 028218 AA 23 21 44 AG 0 2 2 GG 0 0 0 0.000 0.048 0.023 028739 CC 0 0 0 CT 4 0 4 TT 20 23 43 0.198 0.000 0.093 028841 AA 0 0 0 AT 10 9 19 TT 12 14 26 1.903 1.361 3.223 028997 AA 0 0 0 AT 1 0 1 TT 23 22 45 0.011 0.000 0.006 029024 AA 11 20 31 AC 13 3 16 CC 0 0 0 3.311 0.112 1.978 029208 GG 0 0 0 GT 0 1 1 TT 24 22 46 0.000 0.011 0.005 029392 AA 0 0 0 AT 12 9 21 TT 12 14 26 2.667 1.361 3.889 029405 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 029807 AA 0 0 0 AG 0 1 1 GG 23 22 45 0.000 0.011 0.006 029912 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 030153 AA 0 2 2 AT 2 11 13 TT 19 10 29 0.053 0.179 0.120 030173 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 030199 CC 11 15 26 CG 10 8 18 GG 0 0 0 2.051 1.019 2.909 030718 -- 10 15 25 +- 12 8 20 ++ 0 0 0 3.094 1.019 3.673 030931 CC 0 0 0 CG 1 2 3 GG 23 20 43 0.011 0.050 0.052 030941 GG 0 0 0 GT 4 0 4 TT 20 22 42 0.198 0.000 0.095 031136 AA 0 0 0 AG 11 8 19 GG 13 14 27 2.121 1.086 3.116 031174 AA 0 0 0 AT 11 9 20 TT 13 14 27 2.121 1.361 3.433 031549 AA 19 23 42 AG 5 0 5 GG 0 0 0 0.324 0.000 0.148 031561 AA 0 0 0 AG 11 9 20 GG 13 14 27 2.121 1.361 3.433 031719 AA 21 21 42 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 031873 CC 0 0 0 CG 0 2 2 GG 24 21 45 0.000 0.048 0.022 032009 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 032098 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 032237 AA 21 23 44 AC 1 0 1 CC 0 0 0 0.012 0.000 0.006 032528 CC 0 0 0 CT 0 2 2 TT 24 21 45 0.000 0.048 0.022 032536 -- 7 13 20 +- 16 8 24 ++ 1 2 3 4.279 0.221 1.439 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000920: C 002025: g 002364: taaataaa 004205: A 004246: GGAAAGGCTCTTCAGAGGAAGTT 004528: A 007238: CC 009762: t 015513: tg 017811: GTAAGCATTGT 018031: CTTAA 018563: G 026778: aaca 027897: GT 030718: ata 032536: tat