Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000063 00000 ------------ A 0.86 0.29 0.57 G 0.14 0.71 0.43 0000 --- --- --- --- 000363 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 000370 00000 ------------ C 0.35 0.76 0.55 G 0.65 0.24 0.45 0000 --- --- --- --- 000692 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 000728 00000 ------------ A 0.69 0.83 0.76 G 0.31 0.17 0.24 0000 --- --- --- --- 000846 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 000895 00000 ------------ G 0.82 0.32 0.57 C 0.18 0.68 0.43 0000 --- --- --- --- 000972 00000 ------------ G 0.50 0.78 0.64 A 0.50 0.22 0.36 0000 --- --- --- --- 001072 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 001250 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 001642 00000 ------------ G 0.67 0.82 0.74 A 0.33 0.18 0.26 0000 --- --- --- --- 001678 00000 ------------ G 1.00 0.91 0.96 C 0.00 0.09 0.04 0000 --- --- --- --- 001696 00000 ------------ C 0.85 0.41 0.63 T 0.15 0.59 0.37 0000 --- --- --- --- 002103 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 002667 00000 ------------ A 0.90 0.96 0.93 C 0.10 0.04 0.07 0000 --- --- --- --- 002775 00000 ------------ A 0.90 0.96 0.93 C 0.10 0.04 0.07 0000 --- --- --- --- 002829 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 002890 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 002899 00000 ------------ T 0.33 0.76 0.54 G 0.67 0.24 0.46 0000 --- --- --- --- 002934 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 003022 00000 ------------ T 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 003150 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 003303 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 003498 00000 ------------ C 0.85 1.00 0.93 A 0.15 0.00 0.07 0000 --- --- --- --- 003625 00000 ------------ T 0.87 1.00 0.93 C 0.13 0.00 0.07 0000 --- --- --- --- 003705 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 004022 00000 ------------ A 0.91 0.96 0.93 G 0.09 0.04 0.07 0000 --- --- --- --- 004437 00000 ------------ C 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 004494 00000 ------------ A 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 004754 00000 ------------ G 0.92 0.89 0.90 A 0.08 0.11 0.10 0000 --- --- --- --- 004826 00000 ------------ G 0.89 0.95 0.93 A 0.11 0.05 0.07 0000 --- --- --- --- 005067 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 005072 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 005085 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 005119 00000 ------------ C 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 005407 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 005414 00000 ------------ G 0.85 0.64 0.74 A 0.15 0.36 0.26 0000 --- --- --- --- 005536 00000 ------------ C 0.39 0.83 0.60 A 0.61 0.17 0.40 0000 --- --- --- --- 005663 00000 ------------ G 0.65 0.57 0.61 A 0.35 0.43 0.39 0000 --- --- --- --- 005790 00000 ------------ T 0.62 0.83 0.73 C 0.38 0.17 0.27 0000 --- --- --- --- 005845 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 005928 00000 ------------ T 0.75 0.63 0.69 C 0.25 0.37 0.31 0000 --- --- --- --- 006054 00000 ------------ A 0.78 0.91 0.85 G 0.23 0.09 0.15 0000 --- --- --- --- 006123 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 006262 00000 ------------ T 0.65 0.72 0.69 C 0.35 0.28 0.31 0000 --- --- --- --- 006518 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 006684 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 006750 00000 ------------ A 0.60 0.52 0.56 G 0.40 0.48 0.44 0000 --- --- --- --- 006807 00000 ------------ C 0.77 0.87 0.82 T 0.23 0.13 0.18 0000 --- --- --- --- 006842 00000 ------------ C 0.77 0.87 0.82 T 0.23 0.13 0.18 0000 --- --- --- --- 006957 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 006965 00000 ------------ T 1.00 0.80 0.90 G 0.00 0.20 0.10 0000 --- --- --- --- 007247 00000 ------------ C 0.70 0.80 0.75 T 0.30 0.20 0.25 0000 --- --- --- --- 007409 00000 ------------ A 0.70 0.80 0.75 C 0.30 0.20 0.25 0000 --- --- --- --- 007477 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 007563 00000 ------------ A 0.85 0.98 0.91 G 0.15 0.02 0.09 0000 --- --- --- --- 007582 00000 ------------ C 0.85 0.50 0.67 T 0.15 0.50 0.33 0000 --- --- --- --- 007622 00000 ------------ G 0.93 0.59 0.76 A 0.07 0.41 0.24 0000 --- --- --- --- 007666 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 007716 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 007792 00000 ------------ C 0.74 0.72 0.73 T 0.26 0.28 0.27 0000 --- --- --- --- 008343 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 008574 00000 ------------ G 0.83 0.50 0.67 A 0.17 0.50 0.33 0000 --- --- --- --- 008685 00000 ------------ T 0.59 0.74 0.66 C 0.41 0.26 0.34 0000 --- --- --- --- 008990 00000 ------------ A 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 009020 00000 ------------ C 0.86 0.52 0.69 A 0.14 0.48 0.31 0000 --- --- --- --- 009336 00000 ------------ C 0.46 0.70 0.57 A 0.54 0.30 0.43 0000 --- --- --- --- 009507 00213 NON-SYN T 0.83 0.50 0.67 A 0.17 0.50 0.33 0055 TTG ATG LEU(L) MET(M) 009704 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 009719 00000 ------------ C 0.81 0.50 0.66 T 0.19 0.50 0.34 0000 --- --- --- --- 009748 00000 ------------ T 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 009762 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 009847 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 009932 00000 ------------ A 0.67 0.98 0.82 G 0.33 0.02 0.18 0000 --- --- --- --- 010138 00000 ------------ G 0.48 0.70 0.59 A 0.52 0.30 0.41 0000 --- --- --- --- 010217 00000 ------------ G 0.70 0.80 0.75 A 0.30 0.20 0.25 0000 --- --- --- --- 010376 00000 ------------ A 0.85 0.50 0.67 C 0.15 0.50 0.33 0000 --- --- --- --- 010525 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 010668 00000 ------------ G 0.83 0.50 0.67 A 0.17 0.50 0.33 0000 --- --- --- --- 011331 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 011407 00000 ------------ - 0.20 0.28 0.24 + 0.80 0.72 0.76 0000 --- --- --- --- 011707 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 011962 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012194 00000 ------------ C 0.81 0.72 0.77 T 0.19 0.28 0.23 0000 --- --- --- --- 012468* 012471 00000 ------------ A 0.88 0.91 0.89 C 0.12 0.09 0.11 0000 --- --- --- --- 012826 00000 ------------ G 0.63 0.39 0.51 T 0.37 0.61 0.49 0000 --- --- --- --- 012849 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 012977 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 013087 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013112 00000 ------------ C 0.89 0.98 0.93 T 0.11 0.02 0.07 0000 --- --- --- --- 013283 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 013508 00000 ------------ C 0.84 0.98 0.91 T 0.16 0.02 0.09 0000 --- --- --- --- 013509 00000 ------------ G 1.00 0.95 0.98 A 0.00 0.05 0.02 0000 --- --- --- --- 013676 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 013771 00000 ------------ G 0.90 0.98 0.94 A 0.10 0.02 0.06 0000 --- --- --- --- 013810 00000 ------------ G 0.83 0.98 0.90 T 0.17 0.02 0.10 0000 --- --- --- --- 013969 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 014074 00000 ------------ - 0.96 1.00 0.98 + 0.04 0.00 0.02 0000 --- --- --- --- 014181 00000 ------------ C 0.65 0.87 0.76 T 0.35 0.13 0.24 0000 --- --- --- --- 014381 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 014558 00000 ------------ C 0.33 0.83 0.57 A 0.67 0.17 0.43 0000 --- --- --- --- 014932 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 014998 00000 ------------ C 0.90 0.98 0.94 A 0.10 0.02 0.06 0000 --- --- --- --- 015009 00000 ------------ C 0.85 0.98 0.91 T 0.15 0.02 0.09 0000 --- --- --- --- 015116 00000 ------------ - 0.33 0.13 0.23 + 0.67 0.87 0.77 0000 --- --- --- --- 015315 00000 ------------ T 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 015338 00000 ------------ A 0.82 0.97 0.90 G 0.17 0.03 0.10 0000 --- --- --- --- 015356 00000 ------------ G 0.86 0.95 0.90 C 0.14 0.05 0.10 0000 --- --- --- --- 015361 00000 ------------ T 0.34 0.85 0.58 C 0.66 0.15 0.42 0000 --- --- --- --- 015468 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 015474 00000 ------------ G 0.86 0.95 0.91 A 0.14 0.05 0.09 0000 --- --- --- --- 015477 00000 ------------ T 0.43 0.91 0.67 A 0.57 0.09 0.33 0000 --- --- --- --- 015527 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 015766 00000 ------------ C 0.63 0.87 0.75 T 0.37 0.13 0.25 0000 --- --- --- --- 015799 00000 ------------ A 0.31 0.83 0.56 G 0.69 0.17 0.44 0000 --- --- --- --- 016001 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 016295 00000 ------------ G 0.90 0.98 0.94 T 0.10 0.02 0.06 0000 --- --- --- --- 016564 00000 ------------ G 0.54 0.85 0.69 T 0.46 0.15 0.31 0000 --- --- --- --- 016810 00000 ------------ A 0.83 0.91 0.87 G 0.17 0.09 0.13 0000 --- --- --- --- 017235 00000 ------------ G 0.89 0.98 0.93 A 0.11 0.02 0.07 0000 --- --- --- --- 017339 00000 ------------ T 0.32 0.82 0.57 C 0.68 0.18 0.43 0000 --- --- --- --- 017420 00000 ------------ C 0.83 0.98 0.90 T 0.17 0.02 0.10 0000 --- --- --- --- 017703 00000 ------------ C 0.54 0.84 0.68 T 0.46 0.16 0.32 0000 --- --- --- --- 017899 00000 ------------ - 0.32 0.81 0.56 + 0.68 0.19 0.44 0000 --- --- --- --- 017952 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 017974 00000 ------------ C 0.77 0.98 0.87 T 0.23 0.02 0.13 0000 --- --- --- --- 018152 00625 NON-SYN A 0.33 0.83 0.57 G 0.67 0.17 0.43 0192 CAA CGA GLN(Q) ARG(R) 018159 00632 TRUNCATION G 1.00 0.98 0.99 A 0.00 0.02 0.01 0194 TGG TGA TRP(W) *** 018906 00000 ------------ G 0.65 0.87 0.76 A 0.35 0.13 0.24 0000 --- --- --- --- 019029 00000 ------------ C 0.89 1.00 0.95 G 0.11 0.00 0.05 0000 --- --- --- --- 019267 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 019273 00000 ------------ C 1.00 0.95 0.98 G 0.00 0.05 0.02 0000 --- --- --- --- 019354 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 019364 00000 ------------ T 0.79 0.91 0.85 G 0.21 0.09 0.15 0000 --- --- --- --- 019470 00000 ------------ T 0.44 0.85 0.64 C 0.56 0.15 0.36 0000 --- --- --- --- 019534 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019559 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 019694 00000 ------------ T 0.79 0.98 0.88 C 0.21 0.02 0.12 0000 --- --- --- --- 020399 00000 ------------ - 0.58 0.13 0.36 + 0.42 0.87 0.64 0000 --- --- --- --- 020776 00000 ------------ C 1.00 0.97 0.99 G 0.00 0.03 0.01 0000 --- --- --- --- 021026 00000 ------------ C 0.79 0.91 0.85 T 0.21 0.09 0.15 0000 --- --- --- --- 021144 00000 ------------ C 0.85 0.98 0.91 T 0.15 0.02 0.09 0000 --- --- --- --- 021340 00000 ------------ A 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 021399 00000 ------------ T 0.31 0.83 0.56 C 0.69 0.17 0.44 0000 --- --- --- --- 021510 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 021766 00000 ------------ T 0.96 0.96 0.96 C 0.04 0.04 0.04 0000 --- --- --- --- 021988 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 022029 00000 ------------ - 0.00 0.02 0.01 + 1.00 0.98 0.99 0000 --- --- --- --- 022410 00000 ------------ A 0.83 0.98 0.90 G 0.17 0.02 0.10 0000 --- --- --- --- 022617 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 022695 00000 ------------ A 0.65 0.96 0.80 G 0.35 0.04 0.20 0000 --- --- --- --- 022842 00000 ------------ A 0.97 0.97 0.97 G 0.03 0.03 0.03 0000 --- --- --- --- 022882 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 022925 00000 ------------ A 0.88 0.98 0.92 C 0.12 0.02 0.08 0000 --- --- --- --- 022931 00000 ------------ - 0.42 0.10 0.27 + 0.58 0.90 0.73 0000 --- --- --- --- 023120 00000 ------------ T 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 023887 00000 ------------ T 0.85 0.98 0.91 C 0.15 0.02 0.09 0000 --- --- --- --- 024673 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 025094 00000 ------------ G 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 025209 00000 ------------ G 0.28 0.84 0.59 T 0.72 0.16 0.41 0000 --- --- --- --- 025492 00000 ------------ A 0.98 0.95 0.97 C 0.02 0.05 0.03 0000 --- --- --- --- 025515 00000 ------------ A 0.81 0.98 0.90 G 0.19 0.02 0.10 0000 --- --- --- --- 025588 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 026161 00000 ------------ A 0.82 0.98 0.90 G 0.18 0.02 0.10 0000 --- --- --- --- 026184 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 026257 00000 ------------ - 0.12 0.00 0.06 + 0.88 1.00 0.94 0000 --- --- --- --- 026410 00000 ------------ T 0.79 0.98 0.89 C 0.21 0.02 0.11 0000 --- --- --- --- 026465 00000 ------------ - 0.95 1.00 0.98 + 0.05 0.00 0.02 0000 --- --- --- --- 026600 00000 ------------ T 1.00 0.96 0.98 C 0.00 0.04 0.02 0000 --- --- --- --- 026625 00000 ------------ C 0.64 0.89 0.77 T 0.36 0.11 0.23 0000 --- --- --- --- 026856 00000 ------------ C 0.38 0.87 0.62 T 0.62 0.13 0.38 0000 --- --- --- --- 027043 00000 ------------ - 0.18 0.02 0.10 + 0.82 0.98 0.90 0000 --- --- --- --- 027606 01378 3' UTR T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 027678 01450 3' UTR A 0.35 0.87 0.61 G 0.65 0.13 0.39 0000 --- --- --- --- 027737 01509 3' UTR G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 027866 01638 3' UTR - 0.00 0.02 0.01 + 1.00 0.98 0.99 0000 --- --- --- --- 027894 01666 3' UTR A 0.98 0.96 0.97 G 0.02 0.04 0.03 0000 --- --- --- --- 027925 01697 3' UTR C 0.69 0.89 0.79 T 0.31 0.11 0.21 0000 --- --- --- --- 028107 01879 3' UTR C 0.71 0.98 0.84 T 0.29 0.02 0.16 0000 --- --- --- --- 028253 02025 3' UTR - 0.14 0.02 0.08 + 0.86 0.98 0.92 0000 --- --- --- --- 028259 02031 3' UTR A 0.86 0.98 0.92 T 0.14 0.02 0.08 0000 --- --- --- --- 028360 02132 3' UTR G 0.77 0.89 0.83 A 0.23 0.11 0.17 0000 --- --- --- --- 028387 02159 3' UTR - 0.94 1.00 0.97 + 0.06 0.00 0.03 0000 --- --- --- --- 028482 02254 3' UTR - 0.05 0.00 0.02 + 0.95 1.00 0.98 0000 --- --- --- --- 028509 02281 3' UTR G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 028631 00000 ------------ C 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 028674 00000 ------------ G 0.97 0.88 0.92 A 0.03 0.12 0.08 0000 --- --- --- --- 028834 00000 ------------ C 1.00 0.96 0.98 T 0.00 0.04 0.02 0000 --- --- --- --- 029021 00000 ------------ G 0.82 0.61 0.71 T 0.18 0.39 0.29 0000 --- --- --- --- 029142 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 029289 00000 ------------ T 0.96 0.96 0.96 C 0.04 0.04 0.04 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 011407: T 014074: CAAAA 015116: C 016001: CTAA 017899: TT 019354: T 020399: T 022029: CAG 022931: AGCA 024673: C 026257: AT 026465: AT 027043: TG 027866: T 028253: AATA 028387: ATTT 028482: T 029142: AGTT The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 012468 A 0.92 0.91 0.91 C 0.06 0.09 0.07 G 0.02 0.00 0.01