************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 plaur.phase.inp plaur.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST plaur.phase.out_freqs : haplotype frequency estimates plaur.phase.out_pairs : most likely haplotype pairs for each individual plaur.phase.out_recom : estimates of recombination parameters plaur.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 112 Positions of loci: 1312 1658 1783 1966 2313 2796 3498 3504 3864 4141 4566 4729 5165 5172 5405 5471 5612 6165 6172 6301 7020 7236 7517 8477 8761 9870 10334 10383 10571 10595 10975 11304 11667 11693 12149 12280 12321 12372 12563 12774 12814 12913 12922 12987 13022 13174 13297 13707 13735 13814 14471 14535 14623 14624 14653 14987 15195 15270 15282 15687 15718 15900 16351 16355 16566 16635 16892 16949 16984 17279 17391 17403 17488 17511 17728 17912 18139 18241 18562 18584 18753 18765 18912 18993 19157 19613 20028 20068 20169 20297 20382 20651 20901 21162 21414 21590 23669 23766 24184 24274 24343 24355 24402 24618 24695 24782 24809 25009 25081 25092 25158 25254 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file plaur.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGA 3 TCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 2 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGA 3 TCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 3 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGT 4 CCAACTTCACACGATGTTTGCCGCCCAADCCGCGCCCAGGCGTCACGCCGTTGTTCTTGICITGCGG 1.000000 4 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 3.000000 5 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTTTGCCGCCCAADCTGCGCCCAGGCATCACACCGTTGTTCTTGICDTGCAG 1.000000 6 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGT 4 CCGCCTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 7 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGT 4 CCGCCTCCACACGATGTAAACCACTCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 8 CGAAGAGCGAGGGTAGGGAGCACGTTGATGCCCACGAGTTGGGT 4 CTAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 9 CGAAGAGCGAGGGTAGGGAGCACGTTGGGGCCCACGAGTTGGGT 2 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 2.000000 10 CGAAGAGCGAGGGTAGGGAGCACATTGATGCCCACGAGTTGGGA 3 TTAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 2.000000 11 CGAAGAGCGAGGGTAGGGAGCACATTGATGCCCACGAGTTGGGA 3 TTAATTTCACACGATGTATGCCATCCAADTCGCGCCCAGGTGTCACGCCGTTGACGCCAITDGGCAG 2.000000 12 CGAAGAGCGAGGGTAGGGAGGACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 13 CGAAGAGCGAGGGTAGGGAGGACGTCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTATGCCACCCAGICCGCGCCCAGGTGTCGCGCCGTTGTTCTTGICDTGCGG 1.000000 14 CGAAGAGCGAGGGTAGGGAGGACATTGATGCCCACGAGTTGGGA 3 CCGCCTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 15 CGAAGAGCGAGGGTAGGGAGGACATTGATGCCCACGAGTTGGGA 3 TTAATCTTGAGGCTATCAAGTTACCTCGDCCGAATTTGTCTGTCACGCCGTTGTTCTTGDCDTGCGG 1.000000 16 CGCAAAGCGAGGGTAGGAAGGACGTTGGTGCCCACGAGTTGGGT 4 CCAACCTTGAGGCTATTAAATTACCTCGDCTGAGTTTGTCTGTCACGCCGTTGTTCTTGDCDTGCGG 1.000000 17 CGCAAAGCGAGGGTAGGAAGGACGTTGGTGCCCACGAGTTGGCT 4 CCGACTTCACACGATGTAAACCACCCAADCCCCGCCCAGGTGTCACGCCGTTGTTCTTGDCDTGCGG 1.000000 18 CGCAAAGCGAGGGTAGGAAGGACGTCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTTTGCCGCCCAADCCGCGCCCAGGCGTCACGCCGTTATTCTTGICDTGCAG 1.000000 19 CGCAAAGCGAGGGTAGGAAGGACGTCAGTGCCCACGAGTTGGGT 2 CCACTTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACACCGTTGTTCTTGICDTGCAG 1.000000 20 CGCAAAGCGAGGGTAGGAAGGGTGCCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTAACGCCAITDGGTAG 1.000000 21 CGCAGAGCGAGGGTAGGGAGGACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 22 CGCAGAGCGAGGGTAGGGAGGACGTTGGGGCCCACGAGTTGGGT 4 CCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 23 CGCAGAGCGAGGGTAGGGAGGACGTTGGGGCCCATAGATGAGGA 3 CCAACTTCACACGATGTAAACCACCCAADCCCCGCCCAGGTGCCACGCCGTTGTTCTTGICDTGCAG 1.000000 24 CGCAGAGCGAGGGTAGGGAGGACGTCGGTGCTTGTAGATGAGGA 3 CCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTCGTTCTTGICDTGCAG 1.000000 25 CGCAGAGCGAGGGTAGGGAGGACGTCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTATGCCACCCAADCCGCGCCCAGGTGCCACGCCGTTGTTCTTGICDTGCAG 1.000000 26 CGCAGAGCGAGGGTAGGGAGGACGTCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTATGCCACCCAGICCGCGCCCAGGTGTCGCGCCGTTGTTCTTGICDTGCGG 2.000000 27 CGCAGAGCGAGGGTAGGGAGGACGTCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTTTGCCGCCCAADCCGCGCCCAGGCGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 28 CGCAGAGCGAGGGTAGGGAGGACGTCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTTTGCCGCCCAADCCGCGCCCAGGCATTGCGCCGTTGTTCTTGICDTGCAG 1.000000 29 CGCAGAGCGAGGGTAGGGAGGACATTGATGCCCACGAGTTGGGT 4 CCGCCTCCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 30 CGCAGAGCGAGGGTAGGGAGGACATTGGTTCCCACGAGCTGGGT 2 CCAATCTTGAGGCTATCAAGTCACCTCADCCGAATTTGTCCGTCACGCCACTGTTCTTGICDTACAA 1.000000 31 CGCAGAGCGAGGGTAGGGAGGACATTGGTTCCCACGAGCTGGGT 2 CCAATCTTGAGGCTATCAAGTCACCTCADCCGAATTTGTCCGTCGCGCCGTTGTTCTTGICITGCGG 1.000000 32 CGCAGAGCGAGGGTAGGGAGGATGTCAGTGCCCACGAGTTGGGT 2 CCAACTCCACACGATGTAAACCACTCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 33 CGCAGAGCGAGGGTAGGGAGGATGTCAGTGCCCACGAGTTGGGT 2 CCGATTTCACACGATGTATGCCACCCAADCCGCGCCCAGGTGTCACGCCGTTGACGCCAITDGGCAG 1.000000 34 CGCAGAGCGAGGGTAGGGAGGGCATTGATGCCCACGAGTTGGGA 3 TTAATTCCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 35 CGCAGAGCGAGGGTAGGGAGGGCATTGGTTCCCACGAGCTGGGT 2 CCAATTCCACACGATGTAAACCACTCAADCTGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 36 CGCAGAGCGAGGGTAGGGATCATGCCAGTGCCCACGAGTTGGGT 2 CCGATTTCACACGATGTATGCCATCCAADTCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCGG 1.000000 37 CGCAGAGCGAGGGTAGGGATGACGTTGGTGCCCACGAGTTGGCT 4 CCAACTTCACACGATGTAAACCACCCAADCCCCGCCCAGGTGTCACGCCGTTGTTCTTGDCDTGCGG 1.000000 38 CGCAGAGCGAGGGTAGGGATGACGTTGGTGCCCACGAGTTGGCT 4 CCAACTTCACACGATGTATGCCATCCAADTCGCGCCCAGGTGTCACGCCGTTGTTCTTGICITGCGG 1.000000 39 CGCAGAGCGAGGGTAGGGATGACATTGGTGTTTGTAGATGAGGA 3 CCAACTTCACACGATGTAAACCACCCAADCCCCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 40 CGCAGAGCGAGGGTAGGGATGGCATTGATGCCCACGAGTTGGGA 3 CCGATTTCACACGATGTATGCCACCCAADCCGCGCCCAGGTGCCACGCCGTTGTTCTTGICDTGCAG 1.000000 41 CGCAGAGCTAAGGAGGGGTGGATATTGATGCCCACGAGTTGGGA 3 CCGACTCCACACGATGTAAACCACTCAADCTGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 42 CGCAGAGCTAAGGAGGGGTGGATATTGATGCCCACGAGTTGGGA 3 CCGACTCCACACGATGTAAACCACTCAADCTGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCGG 1.000000 43 CGCAGAGCTAAGGAGAGGTGGACATTGATGCCCACGAGTTGGGA 3 TCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCACTGTTCTTGICDTGCAG 1.000000 44 CGCAGAGCTAAAGAGAGGTGGACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 5.000000 45 CGCAGAGCTAAAGAGAGGTGGACGTCAGTGCCCACGAGTTGGGT 2 CCAACTCCACACGATGTAAACCACTCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 2.000000 46 CGCAGAGCTAAAGAGAGGTGGACGTCAGTGCCCACGAGTTGGGT 2 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACACCGTTGTTCTTGICDTGCAG 1.000000 47 CGCAGAGCTAAAGAGAGGTGGACGTCAGTGCCCACGAGTTGGGT 2 CCGCCTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 48 CGCAGAGCTAAAGAGAGGTGGACGTCAGTGCCCACGAGTTGGGT 2 CCGCCTCCACACGATGTAAACCACTCAADCCGCGCCCAGGTGTTGCGCTGTTAACGCCAITDGGCAG 1.000000 49 CGCAGAGCTAAAGAGAGGTGGACGTCAGTGCCCACGAGTTGGGT 4 CCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 50 CGCAGAGCTAAAGAGAGGTGGACGTCAGTGCCCACGAGTTGGGT 4 CCAACTTCACACGATGTATGCCACCCAGICCGCGCCCAGGTGTCACACCGTTGTTCTTGICDTGCAG 1.000000 51 CGCAGAGCTAAAGAGAGGTGGACATTGATGCCCACGAGTTGGGA 3 TCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTCGTTCTTGICDTGCAG 1.000000 52 CGCAGAGCTAAAGAGAGGTGGACATTGATGCCCACGAGTTGGGA 3 TTAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTATCACGCCGTTAACGCCAITDGGTAG 1.000000 53 CGCAGAGCTAAAGAGAGGTGGACATTGGTGTTTGTAGATGAGGA 3 CCAACCTTGAGGCTATCAAGTTACCTCGDCCGAATTTGTCTGTCACGTCACTGTTCTTGICDTACAA 3.000000 54 CGCAGAGCTAAAGAGAGGTGGACATTGGTGTTTGTAGATGAGGA 3 CCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTCGTTCTTGICDTGCAG 1.000000 55 CGCAGAGCTAAAGAGAGGTGGACATTGGTGTTTGTAGATGAGGA 3 CCAACTTCACACGATGTATGCCACCCAGICCGCGCCCAGGTGTCGCGCCGTTGTTCTTGICDTGCGG 1.000000 56 CGCAGAGCTAAAGAGAGGTGGACATTGGTTCCCACGAGCTGGGT 2 CCAACTTCACACGATGTTTGCCGCCCAADCCGCGCCCAGGCATTGCGCCGTTGTTCTTGICDTGCAG 1.000000 57 CGCAGAGCTAAAGAGAGGTGGGCGTCAGTGCCCACGAGTTGGGT 2 CCGCCTTCACACGATGTTTGCCGCCCAADCTGCGCCCAGGCATTGCGCTGTTAACGCCAITDGGCAG 1.000000 58 CGCAGAGCTAAAGAGAGGTGGGTGCCAGTGCCCACGAGTTGGGT 2 CCAATTTCACACGATGTTTGCCGCCCAADCCGCGCCCAGGCATTGTGCCGTTAACGCCAITDGGCAG 2.000000 59 CGCAGAGCTAAAGAGAGGTGGGTGCCAGTGCCCACGAGTTGGGT 2 CCGACTCCACACGATGTAAACCACTCAADCCGCGCCCAGGTGTCATGCCGTTGTTCTTGICDTGCAG 1.000000 60 CGCAGAACTAAGGAGGAGTGGACATTGATGCCCACGAGTTGGGA 3 TTAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 61 CGCAGAACTAAAGAGAGGTGGACATTGATGCCCACGAGTTGGGA 3 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTCGTTCTTGICDTGCAG 1.000000 62 CGCAGGGCTCGGGAAGGGAGGACATTGGTTCCCACGAGCTGGGT 4 CCGCCTTCACACGATGTATGCCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGDCDTGCGG 1.000000 63 CGCAGGGCTCGGGAAGGGAGGATATTGGTTCCCACGAGCTGAGT 2 CCGACTTCACACGATGTTTGCCGCCCAADCCGCGCCCAGGCATTACGCCGTTAACGCCAITDGGTAG 1.000000 64 CGCGGAGCTAAGGAGGAGTGCACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 65 CGCGGAGCTAAGGAGGAGTGGACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 2.000000 66 CGCGGAGCTAAGGAGGAGTGGACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTCGTTCTTGICDTGCAG 1.000000 67 CGCGGAGCTAAGGAGGAGTGGACGTTGATGCCCACGAGTTGGGT 4 CCAATTCCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 68 CGCGGAGCTAAGGAGGAGTGGACGTTGGGGCCCACGAGTTGGGT 4 CCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTCGTTCTTGICDTGCAG 1.000000 69 CGCGGAGCTAAGGAGGAGTGGACGTCAGTGCCCACGAGTTGGGT 2 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 70 CGCGGAGCTAAGGAGGAGTGGACGTCAGTGCCCACGAGTTGGGT 2 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACACCGTTGTTCTTGICDTGCAG 1.000000 71 CGCGGAGCTAAGGAGGAGTGGACGTCAGTGCCCACGAGTTGGGT 2 CCGCCTCCACACGATGTAAACCACTCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 72 CGCGGAGCTAAGGAGGAGTGGACATTGATGCCCACGAGTTGGGA 3 CCGCCTCCACACGATGTAAACCACTCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 73 CGCGGAGCTAAGGAGGAGTGGATGTTGGTGCCCACGAGTTGGGT 4 CCAACTTCACACGATGTATGCCGCCCAADCTGCGCCCAGGCATTGCGCTGTTAACGCCAITDGGCAG 1.000000 74 CGCGGAGCTAAGGAGGAGTGGATGTCAGTGCCCACGAGTTGGGA 3 TTAATTCCACACGATGTAAACCACTCAADCTGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 75 CGCGGAGCTAAGGAGGAGTGGATGTCAGTGCCCACGAGTTGGGT 2 CCAACTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTAACGCCAITDGGTAG 1.000000 76 CGCGGAGCTAAAGAGAGGTGGACGTTGATGCCCACGAGTTGGGT 4 CCAATTTCACACGATGTAAACCACCCAADCCGCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 77 TACAGGGTTCGGAAAGGGAGGACATTGGTTCCCACGAGCTGAGT 2 CCGACTTCACACGATGTAAACCACCCAADCCCCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 78 TACAGGGTTCGGAAAGGGAGGATATTGGTTCCCACGAGCTGAGT 2 CCGACTTCACACGATGTAAACCACCCAADCCCCGCCCAGGTGTCACGCCGTTGTTCTTGICDTGCAG 1.000000 79 TACAGGGTTCGGAAAGGGAGGGCATTGATGCCCACGAGTTGGGA 3 CCGATCTTGAGGCTATCAAGTCACCTCADCCGAATTTGTCCGTCACGCCGTTAACGCCAITDGGCAG 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (16,1) D002: (41,72) D003: (3,42) D004: (35,58) D005: (27,57) D006: (52,74) D007: (5,40) D008: (4,73) D009: (39,77) D010: (17,79) D011: (7,37) D012: (18,63) D013: (29,33) D014: (38,56) D015: (32,58) D016: (11,62) D033: (15,36) D034: (75,78) D035: (25,20) D036: (31,54) D037: (11,23) D038: (34,43) D039: (26,48) D040: (49,59) E001: (9,22) E002: (12,69) E003: (46,61) E004: (14,26) E005: (53,68) E006: (21,55) E007: (10,67) E008: (24,53) E009: (13,64) E010: (60,76) E011: (28,44) E012: (45,66) E013: (10,44) E014: (65,71) E015: (19,44) E016: (2,70) E017: (44,51) E018: (44,47) E019: (8,30) E020: (9,45) E021: (4,50) E022: (6,53) E023: (4,65) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 C G (C) A (A) A G C G A G G G T A G G (A) A G (G) A C G T T G (G) T G C C C A C G A G T T G G G (T) (4) (C) C A A C C T T G A G G C T A T T A A A T T A C C T C G D C (T) G A G T T T G T C T G T C A C G C C G T T G T T C T T G D C D T G C G G C G (A) A (G) A G C G A G G G T A G G (G) A G (C) A C G T T G (A) T G C C C A C G A G T T G G G (A) (3) (T) C A A C T T C A C A C G A T G T A A A C C A C C C A A D C (C) G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 D002 C G C A G A G C T A A G G A G G G G T G G A T A T T G A T G C C C A C G A G T T G G G A 3 C C G A C T C C A C A C G A T G T A A A C C A C T C A A D C (T) G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C G G A G C T A A G G A G G A G T G G A C A T T G A T G C C C A C G A G T T G G G A 3 C C G C C T C C A C A C G A T G T A A A C C A C T C A A D C (C) G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 D003 C G A A G A G C G A G G G T A G G G A G C A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A C T T C A C A C G A T G T T T G C C G C C C A A D C C G C G C C C A G G C G T C A C G C C G T T G T T C T T G I C (I) T G C G G C G C A G A G C T A A G G A G G G G T G G A T A T T G A T G C C C A C G A G T T G G G A 3 C C G A C T C C A C A C G A T G T A A A C C A C T C A A D C T G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C (D) T G C G G 0 D004 C G C A G A G C [G] A (G) (G) G (T) (A) (G) G G (A) G G G C A T T G G T T C C C A C G A G C T G G G T 2 C C A A [T] T C C A C A C G A T G T A A A C C A C T C A A D C T G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C [T] A (A) (A) G (A) (G) (A) G G (T) G G G T G C C A G T G C C C A C G A G T T G G G T 2 C C A A [T] T T C A C A C G A T G T T T G C C G C C C A A D C C G C G C C C A G G C A T T G T G C C G T T A A C G C C A I T D G G C A G 0 D005 C G C A G A G C (G) A (G) (G) G (T) (A) (G) G G (A) G G (A) C G T C A G T G C C C A C G A G T T G G G T 2 C C (A) (A) C T T C A C A C G A T G T T T G C C G C C C A A D C C G C G C C C A G G C G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C (T) A (A) (A) G (A) (G) (A) G G (T) G G (G) C G T C A G T G C C C A C G A G T T G G G T 2 C C (G) (C) C T T C A C A C G A T G T T T G C C G C C C A A D C T G C G C C C A G G C A T T G C G C T G T T A A C G C C A I T D G G C A G 0 D006 C G C (A) G A G C T A A (A) G A G (A) (G) G T G G A (C) (A) T (T) (G) (A) T G C C C A C G A G T T G G G A 3 T T A A T T (T) C A C A C G A T G T A A A C C A C (C) C A A D C (C) G C G C C C A G G T (A) T C A C G C C G T T A A C G C C A I T D G G T A G C G C (G) G A G C T A A (G) G A G (G) (A) G T G G A (T) (G) T (C) (A) (G) T G C C C A C G A G T T G G G A 3 T T A A T T (C) C A C A C G A T G T A A A C C A C (T) C A A D C (T) G C G C C C A G G T (G) T C A C G C C G T T G T T C T T G I C D T G C A G 0 D007 C G A A G A G C G A G G G T A G G G A G C A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T (T) T G C C (G) C C C A A D C (T) G C G C C C A G G (C) (A) (T) C A C (A) C C G T T G T T C T T G I C D T G C A G C G C A G A G C G A G G G T A G G G A T G G C A T T G A T G C C C A C G A G T T G G G A 3 C C G A T T T C A C A C G A T G T (A) T G C C (A) C C C A A D C (C) G C G C C C A G G (T) (G) (C) C A C (G) C C G T T G T T C T T G I C D T G C A G 0 D008 C G (A) (A) G A G C (G) A (G) G G (T) (A) G (G) G (A) G C A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G (C) (G) G A G C (T) A (A) G G (A) (G) G (A) G (T) G G A T G T T G G T G C C C A C G A G T T G G G T 4 C C A A C T T C A C A C G A T G T A T G C C G C C C A A D C T G C G C C C A G G C A T T G C G C T G T T A A C G C C A I T D G G C A G 0 D009 (C) (G) C A G (A) G (C) (G) (A) G G (G) (T) A G G G A (T) G A C A T T G G T G T T T G T A G A T G A G G A 3 C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C C C G C C C A G G T G [T] C A C G C C G T T G T T C T T G I C D T G C A G (T) (A) C A G (G) G (T) (T) (C) G G (A) (A) A G G G A (G) G A C A T T G G T T C C C A C G A G C T G A G T 2 C C G A C T T C A C A C G A T G T A A A C C A C C C A A D C C C C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 D010 (C) (G) C A (A) (A) G (C) [G] (A) G G (G) (T) A G G (A) A G G (A) C (G) T T G (G) T G C C C A C G A G T T G G (C) (T) (4) C C G A (C) T T C A C A C G A T G T A A A C C A C C C A A D C C C C G C C C A G G T G T C A C G C C G T T G T T C T T G D C D T G C G G (T) (A) C A (G) (G) G (T) [T] (C) G G (A) (A) A G G (G) A G G (G) C (A) T T G (A) T G C C C A C G A G T T G G (G) (A) (3) C C G A (T) C T T G A G G C T A T C A A G T C A C C T C A D C C G A A T T T G T C C G T C A C G C C G T T A A C G C C A I T D G G C A G 0 D011 C G A A G A G C G A G G G T A G G G A G C A C G T T G A T G C C C A C G A G T T G G G T 4 C C G C C T C C A C A C G A T G T A A A C C A C T C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C G A G G G T A G G G A T G A C G T T G G T G C C C A C G A G T T G G C T 4 C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C C C G C C C A G G T G T C A C G C C G T T G T T C T T G D C D T G C G G 0 D012 C G C A A A G C G A G G G T A G G A A G G A (C) (G) T (C) (A) G T (G) C C C A C G A G (T) T G (G) G T 2 C C (A) A C T T C A C A C G A T G T T T G C C G C C C A A D C C G C G C C C A G G C (G) T (C) A C G C C G T T A (T) (T) (C) (T) (T) (G) I (C) D (T) G (C) A G C G C A G G G C T C G G G A A G G G A G G A (T) (A) T (T) (G) G T (T) C C C A C G A G (C) T G (A) G T 2 C C (G) A C T T C A C A C G A T G T T T G C C G C C C A A D C C G C G C C C A G G C (A) T (T) A C G C C G T T A (A) (C) (G) (C) (C) (A) I (T) D (G) G (T) A G 0 D013 C G C A G A G C G A G G G T A G G G A G G A (C) (A) T (T) (G) (A) T G C C C A C G A G T T G G G T (4) C C G (C) (C) T C C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C G A G G G T A G G G A G G A (T) (G) T (C) (A) (G) T G C C C A C G A G T T G G G T (2) C C G (A) (T) T T C A C A C G A T G T A T G C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G A C G C C A I T D G G C A G 0 D014 C G C A G A G C G A G G G T A G G G A T G A C G T T G G T G C C C A C G A G T T G G C T 4 C C A A C T T C A C A C G A T G T (A) T G C C (A) (T) C C A A D (T) C G C G C C C A G G (T) (G) T (C) (A) C G C C G T T G T T C T T G I C (I) T G C (G) G C G C A G A G C T A A A G A G A G G T G G A C A T T G G T T C C C A C G A G [C] T G G G T 2 C C A A C T T C A C A C G A T G T (T) T G C C (G) (C) C C A A D (C) C G C G C C C A G G (C) (A) T (T) (G) C G C C G T T G T T C T T G I C (D) T G C (A) G 0 D015 C G C A G A G C (G) A (G) (G) G (T) (A) (G) G G (A) G G A T G T C A G T G C C C A C G A G T T G G G T 2 C C A A (C) T C C A C A C G A T G T A A A C C A C T C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C (T) A (A) (A) G (A) (G) (A) G G (T) G G G T G C C A G T G C C C A C G A G T T G G G T 2 C C A A (T) T T C A C A C G A T G T T T G C C G C C C A A D C C G C G C C C A G G C A T T G T G C C G T T A A C G C C A I T D G G C A G 0 D016 C G (A) A G (A) G C (G) (A) G G G (T) A G G G A G (C) A C A T T G A T G C C C A C G A G T T G G G A 3 T T A A T T T C A C A C G A T G T A T G C C A (T) C C A A D (T) C G C G C C C A G G T G T C A C G C C G T T G (A) (C) (G) (C) (C) (A) (I) (T) D (G) G C (A) G C G (C) A G (G) G C (T) (C) G G G (A) A G G G A G (G) A C A T T G G T T C C C A C G A G C T G G G T 4 C C G C C T T C A C A C G A T G T A T G C C A (C) C C A A D (C) C G C G C C C A G G T G T C A C G C C G T T G (T) (T) (C) (T) (T) (G) (D) (C) D (T) G C (G) G 0 D033 C G (A) A G A G C G A G G G T A G G G A G G A C A T T G A T G C C C A C G A G T T G G G A 3 T T A A T C T T G A G G C T A T C A A G T T A C C T C G D C C G A A T T T G T C T G T C A C G C C G T T G T T C T T G D C D T G C G G C G (C) A G A G C G A G G G T A G G G A T C A T G C C A G T G C C C A C G A G T T G G G T 2 C C G A T T T C A C A C G A T G T A T G C C A T C C A A D T C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C G G 0 D034 (C) (G) C (G) G (A) G (C) T (A) (A) G (G) A (G) G (A) G (T) G G A T G T C A G T G C C C A C G A G T T G G G T 2 C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T (A) (A) (C) (G) (C) (C) (A) I (T) D (G) G (T) A G (T) (A) C (A) G (G) G (T) T (C) (G) G (A) A (A) G (G) G (A) G G A T A T T G G T T C C C A C G A G C T G A G T 2 C C G A C T T C A C A C G A T G T A A A C C A C C C A A D C C C C G C C C A G G T G T C A C G C C G T T (G) (T) (T) (C) (T) (T) (G) I (C) D (T) G (C) A G 0 D035 C G C A (G) A G C G A G G G T A G G (G) A G G (A) (C) G (T) C A G T G C C C A C G A G T T G G G T 2 C C A A C T T C A C A C G A T G T A T G C C A C C C A A D C C G C G C C C A G G T G C C A C G C C G T T G T T C T T G I C D T G C A G C G C A (A) A G C G A G G G T A G G (A) A G G (G) (T) G (C) C A G T G C C C A C G A G T T G G G T 2 C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T A A C G C C A I T D G G T A G 0 D036 C G C A G A G C (G) A (G) (G) G (T) (A) (G) G G (A) G G A C A T T G G T (T) (C) (C) (C) (A) (C) (G) (A) (G) (C) (T) (G) G G (T) (2) C C A A (T) C T T G A G G C T A T C A A G T C A C C T C A D C C G A A T T T G T C C G T C (G) C G C C G T T G T T C T T G I C I T G C G G C G C A G A G C (T) A (A) (A) G (A) (G) (A) G G (T) G G A C A T T G G T (G) (T) (T) (T) (G) (T) (A) (G) (A) (T) (G) (A) G G (A) (3) C C A A (C) T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C (A) C G C C G T C G T T C T T G I C D T G C A G 0 D037 C G (A) A G A G C G A G G G T A G G G A G (C) A C A T T G A T G C C C A C G A G T T G G G A 3 T T A A T T T C A C A C G A T G T A T G C C A T C C A A D T C G C G C C C A G G T G (T) C A C G C C G T T G A C G C C A I T D G G C A G C G (C) A G A G C G A G G G T A G G G A G (G) A C G T T G G G G C C C A T A G A T G A G G A 3 C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C C C G C C C A G G T G (C) C A C G C C G T T G T T C T T G I C D T G C A G 0 D038 C G C A G A G C G A G G G T A G G G A G G (G) C A T T G A T G C C C A C G A G T T G G G A 3 T (T) A A (T) T (C) C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C (G) (T) T G T T C T T G I C D T G C A G C G C A G A G C T A A G G A G A G G T G G (A) C A T T G A T G C C C A C G A G T T G G G A 3 T (C) A A (C) T (T) C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C (A) (C) T G T T C T T G I C D T G C A G 0 D039 C G C A G A G C G A G G G T A G G G A G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C A A C T T C A C A C G A T G T A T G C C A C C C A [G] I C C G C G C C C A G G T G T C G C G C C G T T G T T C T T G I C D T G C G G C G C A G A G C T A A A G A G A G G T G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C G C C T C C A C A C G A T G T A A A C C A C T C A A D C C G C G C C C A G G T G T T G C G C T G T T A A C G C C A I T D G G C A G 0 D040 C G C A G A G C T A A A G A G A G G T G G (A) (C) G (T) C A G T G C C C A C G A G T T G G G T (4) C C (A) A C T (T) C A C A C G A T G T A A A C C A C (C) C A A D C C G C G C C C A G G T G T C A (C) G C C G T T G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G G (G) (T) G (C) C A G T G C C C A C G A G T T G G G T (2) C C (G) A C T (C) C A C A C G A T G T A A A C C A C (T) C A A D C C G C G C C C A G G T G T C A (T) G C C G T T G T T C T T G I C D T G C A G 0 E001 C G (A) A G A G C G A G G G T A G G G A G C A C G T T G G G G C C C A C G A G T T G G G T 2 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G (C) A G A G C G A G G G T A G G G A G G A C G T T G G G G C C C A C G A G T T G G G T 4 C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E002 C G A A G A G C G A G G G T A G G G A G G A C G T (T) (G) (A) T G C C C A C G A G T T G G G T (4) C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C G G A G C T A A G G A G G A G T G G A C G T (C) (A) (G) T G C C C A C G A G T T G G G T (2) C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E003 C G C A G A (G) C T A A A G A G A G G T G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C (A) C C G T (T) G T T C T T G I C D T G C A G C G C A G A (A) C T A A A G A G A G G T G G A C A T T G A T G C C C A C G A G T T G G G A 3 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C (G) C C G T (C) G T T C T T G I C D T G C A G 0 E004 C G (A) A G A G C G A G G G T A G G G A G G A C A T T G A T G C C C A C G A G T T G G G A 3 C C G C C T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G (C) A G A G C G A G G G T A G G G A G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C A A C T T C A C A C G A T G T A T G C C A C C C A [G] I C C G C G C C C A G G T G T C G C G C C G T T G T T C T T G I C D T G C G G 0 E005 C G C (A) G A G C T A A (A) G A G (A) (G) G T G G A C (A) T T G G (T) G (T) (T) (T) (G) (T) (A) (G) (A) T (G) (A) G G (A) (3) C C A A C C T T G A G G C T A T C A A G T T A C C T C G D C C G A A T T T G T C T G T C A C G T C A C T G T T C T T G I C D T A C A A C G C (G) G A G C T A A (G) G A G (G) (A) G T G G A C (G) T T G G (G) G (C) (C) (C) (A) (C) (G) (A) (G) T (T) (G) G G (T) (4) C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T C G T T C T T G I C D T G C A G 0 E006 C G C A G A G C (G) A (G) (G) G (T) (A) (G) G G (A) G G A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T A (A) (A) C C A C C C A A (D) C C G C G C C C A G G T G T C (A) C G C C G T T G T T C T T G I C D T G C (A) G C G C A G A G C (T) A (A) (A) G (A) (G) (A) G G (T) G G A C A T T G G T G T T T G T A G A T G A G G A 3 C C A A C T T C A C A C G A T G T A (T) (G) C C A C C C A [G] (I) C C G C G C C C A G G T G T C (G) C G C C G T T G T T C T T G I C D T G C (G) G 0 E007 C G A A G A G C G A G G G T A G G G A G (C) A C (A) T T G A T G C C C A C G A G T T G G G (A) (3) (T) (T) A A T T (T) C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C G G A G C T A A G G A G G A G T G (G) A C (G) T T G A T G C C C A C G A G T T G G G (T) (4) (C) (C) A A T T (C) C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E008 C G C A G A G C (G) A (G) (G) G (T) (A) (G) G G (A) G G A C (G) T (C) G G T G (C) T T G T A G A T G A G G A 3 C C A A C T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T C G T T C T T G I C D T G C A G C G C A G A G C (T) A (A) (A) G (A) (G) (A) G G (T) G G A C (A) T (T) G G T G (T) T T G T A G A T G A G G A 3 C C A A C C T T G A G G C T A T C A A G T T A C C T C G D C C G A A T T T G T C T G T C A C G T C A C T G T T C T T G I C D T A C A A 0 E009 C G A A G A G C G A G G G T A G G G A G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C A A C T T C A C A C G A T G T A T G C C A C C C A [G] I C C G C G C C C A G G T G T C G C G C C G T T G T T C T T G I C D T G C G G C G C G G A G C T A A G G A G G A G T G C A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E010 C G C A G A A C T A A G G A G G A G T G G A C A T T G A T G C C C A C G A G T T G G G A 3 T T A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C G G A G C T A A A G A G A G G T G G A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A [T] T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E011 C G C A G A G C (G) A (G) (G) G (T) (A) (G) G G (A) G G A C G T (C) (A) (G) T G C C C A C G A G T T G G G T (2) C C A A (C) T T C A C A C G A T G T (T) (T) (G) C C (G) C C C A A D C C G C G C C C A G G (C) (A) T (T) (G) C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C (T) A (A) (A) G (A) (G) (A) G G (T) G [G] A C G T (T) (G) (A) T G C C C A C G A G T T G G G T (4) C C A A (T) T T C A C A C G A T G T (A) (A) (A) C C (A) C C C A A D C C G C G C C C A G G (T) (G) T (C) (A) C G C C G T T G T T C T T G I C D T G C A G 0 E012 C G C (A) G A G C T A A (A) G A G (A) (G) G T G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C A A C T (C) C A C A C G A T G T A A A C C A C [T] C A A D C C G C G C C C A G G T G T C A C G C C G T (T) G T T C T T G I C D T G C A G C G C (G) G A G C T A A (G) G A G (G) (A) G T G G A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T (T) C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T (C) G T T C T T G I C D T G C A G 0 E013 C G A A G A G C G A G G G T A G G G A G [C] A C (A) T T G A T G C C C A C G A G T T G G G (A) (3) (T) (T) A A [T] T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G [G] A C (G) T T G A T G C C C A C G A G T T G G G (T) (4) (C) (C) A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E014 C G C G G A G C T A A G G A G G A G T G G A C G T (T) (G) (A) T G C C C A C G A G T T G G G T (4) C C A A T T (T) C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C G G A G C T A A G G A G G A G T G G A C G T (C) (A) (G) T G C C C A C G A G T T G G G T (2) C C G C C T (C) C A C A C G A T G T A A A C C A C [T] C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E015 C G C A A A G C G A G G G T A G G A A G G A C G T (C) (A) (G) T G C C C A C G A G T T G G G T (2) C C A (C) T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C (A) C C G T T G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G G A C G T (T) (G) (A) T G C C C A C G A G T T G G G T (4) C C A (A) T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C (G) C C G T T G T T C T T G I C D T G C A G 0 E016 C G A A G A G C G A G G G T A G G G A G C A C G T (T) (G) (A) T G C C C A C G A G T T G G G (A) (3) (T) C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C (G) C C G T T G T T C T T G I C D T G C A G C G C G G A G C T A A G G A G G A G T G G A C G T (C) (A) (G) T G C C C A C G A G T T G G G (T) (2) (C) C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C (A) C C G T T G T T C T T G I C D T G C A G 0 E017 C G C A G A G C T A A A G A G A G G T G G A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T (T) G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G G A C A T T G A T G C C C A C G A G T T G G G A 3 T C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T (C) G T T C T T G I C D T G C A G 0 E018 C G C A G A G C T A A A G A G A G G T G [G] A C G T T G A T G C C C A C G A G T T G G G T 4 C C (A) (A) (T) T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C (G) (C) (C) T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E019 C G (A) A G A G C G A G G G T A G G G A G (C) A C G T T G A T G C C C A C G A G T T G G G T 4 C (T) A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C (G) (T) T G T T C T T G I C D T (G) C A (G) C G (C) A G A G C G A G G G T A G G G A G (G) A C A T T G G T T C C C A C G A G C T G G G T 2 C (C) A A T C T T G A G G C T A T C A A G T C A C C T C A D C C G A A T T T G T C C G T C A C G C C (A) (C) T G T T C T T G I C D T (A) C A (A) 0 E020 C G A A G A G C G A G G G T A G G G A G C A C G T T G G G G C C C A C G A G T T G G G T 2 C C A A (T) T (T) C A C A C G A T G T A A A C C A C (C) C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G G A C G T C A G T G C C C A C G A G T T G G G T 2 C C A A (C) T (C) C A C A C G A T G T A A A C C A C (T) C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G 0 E021 C G A A G A G C G A G G G T A G G G A G C A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T A (A) (A) C C A C C C A A (D) C C G C G C C C A G G T G T C A C (G) C C G T T G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G G A C G T C A G T G C C C A C G A G T T G G G T 4 C C A A C T T C A C A C G A T G T A (T) (G) C C A C C C A [G] (I) C C G C G C C C A G G T G T C A C (A) C C G T T G T T C T T G I C D T G C A G 0 E022 C G A A G A G C G A G G G T A G G G A G C A C G T T G A T G C C C A C G A G T T G G G T 4 C C G C C T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C A G A G C T A A A G A G A G G T G G A C A T T G G T G T T T G T A G A T G A G G A 3 C C A A C C T T G A G G C T A T C A A G T T A C C T C G D C C G A A T T T G T C T G T C A C G T C A C T G T T C T T G I C D T A C A A 0 E023 C G A A G A G C G A G G G T A G G G A G (C) A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G C G C G G A G C T A A G G A G G A G T G (G) A C G T T G A T G C C C A C G A G T T G G G T 4 C C A A T T T C A C A C G A T G T A A A C C A C C C A A D C C G C G C C C A G G T G T C A C G C C G T T G T T C T T G I C D T G C A G END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = = (C) = (A) = = = = = = = = = = = = (A) = = (G) = = = = = = (G) = = = = = = = = = = = = = = = (T) (4) (C) = = = = C = T G A G G C T A T = = = = T T = = = T ? G = = (T) = ? = T ? T G T C = = = = = = = = = = ? = = = = = = = = D = = = = = G = = = (A) = (G) = = = = = = = = = = = = (G) = = (C) = = = = = = (A) = = = = = = = = = = = = = = = (A) (3) (T) = = = = T = C A C A C G A T G = = = = C C = = = C ? A = = (C) = ? = C ? C A G G = = = = = = = = = = ? = = = = = = = = I = = = = = A = 0 D002 = = = A = = = = = = = ? = = = = G = = = = = T = = = = = = = = = = = = = = = ? ? = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = ? = = = = A = = = = = C = = = = = = = = = = = = = = = ? ? = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 D003 = = A = = = = = G = G = = T A = = = A = C = C G = = = = = = = = = = = = = = ? = = = = T 4 = = A = = = T = = = = = = = = = = T T G = = G = C = = = = = C = = = = = = ? ? = C = = = = = = = = = = = = = = = = = = = = (I) = = = = = = = C = = = = = T = A = = A G = = = T = G = T A = = = = = = = = = = = = = = ? = = = = A 3 = = G = = = C = = = = = = = = = = A A A = = A = T = = = = = T = = = = = = ? ? = T = = = = = = = = = = = = = = = = = = = = (D) = = = = = 0 D004 = = = = = = = = ? = (G) (G) = (T) (A) (G) = = (A) = = = C A T T G = = T = = = = = = = = ? = = = = = = = = ? ? ? = C = = = = = = = = = = A A A = = A = T = = = = = T = = = = = = = = = T G = C A C = = = = = = G T T C T T G = C = T = = = = = = = = = = = = ? = (A) (A) = (A) (G) (A) = = (T) = = = T G C C A = = G = = = = = = = = ? = = = = = = = = ? ? ? = T = = = = = = = = = = T T G = = G = C = = = = = C = = = = = = = = = C A = T G T = = = = = = A A C G C C A = T = G = = = = 0 D005 = = = = = = = = (G) = (G) (G) = (T) (A) (G) = = (A) = = (A) = = = = = = = = = = = = = = = = ? = = = = = = = = (A) (A) = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? C = = = = = = = = = = G = C A = = = C = = = G T T C T T G = C = T = = = = = = = = = = = = (T) = (A) (A) = (A) (G) (A) = = (T) = = (G) = = = = = = = = = = = = = = = = ? = = = = = = = = (G) (C) = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? T = = = = = = = = = = A = T G = = = T = = = A A C G C C A = T = G = = = = 0 D006 = = = (A) = = = = = = = (A) = = = (A) (G) = = = = = (C) (A) = (T) (G) (A) = = = = = = = = = = ? = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = (C) = = = = = (C) = = = = = = = = = = (A) = = = = = = = = = = A A C G C C A = T = G = T = = = = = (G) = = = = = = = (G) = = = (G) (A) = = = = = (T) (G) = (C) (A) (G) = = = = = = = = = = ? = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = (T) = = = = = (T) = = = = = = = = = = (G) = = = = = = = = = = G T T C T T G = C = T = C = = 0 D007 = = A = = = = = = = = = = = = = = = = G C A = G = = = = = = = = = = = = = = ? = = = = T 4 = = A = = = = = = = = = = = = = = (T) = = = = (G) = = = = = = = (T) = = = = = = = = = (C) (A) (T) = = = (A) = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = T G G = A = = = = = = = = = = = = = = ? = = = = A 3 = = G = = = = = = = = = = = = = = (A) = = = = (A) = = = = = = = (C) = = = = = = = = = (T) (G) (C) = = = (G) = = = = = = = = = = = = = = = = = = = = 0 D008 = = (A) (A) = = ? ? (G) = (G) = = (T) (A) = (G) = (A) = C = C = = = ? A = = = = = = = = = = ? = = = = = = = = = = T = = = = = = = = = = = = = A A = = A = = = = = = = C = = = = = = = ? ? T G = C A = = = C = = = G T T C T T G = C = T = = = = = = (C) (G) = = ? ? (T) = (A) = = (A) (G) = (A) = (T) = G = T = = = ? G = = = = = = = = = = ? = = = = = = = = = = C = = = = = = = = = = = = = T G = = G = = = = = = = T = = = = = = = ? ? C A = T G = = = T = = = A A C G C C A = T = G = = = = 0 D009 (C) (G) = = = (A) = (C) (G) (A) = = (G) (T) = = = = = (T) = = = = = = = = = G T T ? ? T A G A T G A G = A 3 = = A = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = ? = = ? = = = = = = = ? = = ? ? ? ? ? ? ? = = = = = = = (T) (A) = = = (G) = (T) (T) (C) = = (A) (A) = = = = = (G) = = = = = = = = = T C C ? ? C G A G C T G A = T 2 = = G = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = ? = = ? = = = = = = = ? = = ? ? ? ? ? ? ? = = = = = = = 0 D010 (C) (G) = = (A) (A) = (C) ? (A) = = (G) (T) = = = (A) = = = (A) = (G) = = = (G) = = = = = = = = = = = = = = (C) (T) (4) = = = = (C) T = C A C ? C G A T G T = = A C = = = = C A = = = = C C G C C C A G G T = = = = = = = = = ? = G ? ? ? ? ? ? ? C = T = = G = (T) (A) = = (G) (G) = (T) ? (C) = = (A) (A) = = = (G) = = = (G) = (A) = = = (A) = = = = = = = = = = = = = = (G) (A) (3) = = = = (T) C = T G A ? G C T A T C = = G T = = = = T C = = = = G A A T T T G T C C = = = = = = = = = ? = A ? ? ? ? ? ? ? T = G = = A = 0 D011 ? = A = = = = = = = = = = = = = = = = G C = = = = = = A = = = = = = = = = = = = = = G = = = = G C = = C = = = = = = = = = = = = = = = = = T ? ? = = = = G = = = = = = = = = = = = = = = = = = ? = = ? = = = = = I = = = = = A = ? = C = = = = = = = = = = = = = = = = T G = = = = = = G = = = = = = = = = = = = = = C = = = = A A = = T = = = = = = = = = = = = = = = = = C ? ? = = = = C = = = = = = = = = = = = = = = = = = ? = = ? = = = = = D = = = = = G = 0 D012 = = = = A A = = G A = = = T = = = A = = = = (C) (G) = (C) (A) = = (G) = = = = = = = = (T) = = (G) = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = (C) = = = = = = = = = (T) (T) (C) (T) (T) (G) = (C) = (T) = (C) = = = = = = G G = = T C = = = A = = = G = = = = (T) (A) = (T) (G) = = (T) = = = = = = = = (C) = = (A) = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = (T) = = = = = = = = = (A) (C) (G) (C) (C) (A) = (T) = (G) = (T) = = 0 D013 = = = = = = = = = = = = = = = = = = = = = = (C) (A) = (T) (G) (A) = = = = = = = ? ? ? = = = = = = (4) = = = (C) (C) = C = = = = = = = = = = = A A = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = T T C T T G = C = T = = = = = = = = = = = = = = = = = = = = = = = = = = (T) (G) = (C) (A) (G) = = = = = = = ? ? ? = = = = = = (2) = = = (A) (T) = T = = = = = = = = = = = T G = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = A C G C C A = T = G = = = = 0 D014 = = = = = = = = G = G G = T A G = = A T = = = G = ? = = = G = = = = = = = = ? ? = = C = 4 = = = = = = = = = = = = = = = = = (A) = = = = (A) (T) = = = = = (T) = = = = = = = = = ? (T) (G) = (C) (A) = = = = = = = = = = = = = = = = (I) = = = (G) = = = = = = = = = T = A A = A G A = = T G = = = A = ? = = = T = = = = = = = = ? ? = = G = 2 = = = = = = = = = = = = = = = = = (T) = = = = (G) (C) = = = = = (C) = = = = = = = = = ? (C) (A) = (T) (G) = = = = = = = = = = = = = = = = (D) = = = (A) = 0 D015 = = = = = = = = (G) = (G) (G) = (T) (A) (G) = = (A) = ? A = = T = = = = = = = = = = = = = = = = = = = = = = = = (C) = C = = = = = = = = = = A A A = = A = T = = = = = = = = = = = = = = = T G = C A C = = = = = = G T T C T T G = C = T = = = = = = = = = = = = (T) = (A) (A) = (A) (G) (A) = = (T) = ? G = = C = = = = = = = = = = = = = = = = = = = = = = = = (T) = T = = = = = = = = = = T T G = = G = C = = = = = = = = = = = = = = = C A = T G T = = = = = = A A C G C C A = T = G = = = = 0 D016 = = (A) = = (A) = = (G) (A) = = = (T) = = = = = = (C) = = = = = = A = G = = = = = = = = T = = = = A 3 T T A A T = = = = = = = = = = = = = = = = = = (T) = = = = = (T) = = = = = = = = = = = = = = = = = = = ? = = = (A) (C) (G) (C) (C) (A) (I) (T) = (G) = = (A) = = = (C) = = (G) = = (T) (C) = = = (A) = = = = = = (G) = = = = = = G = T = = = = = = = = C = = = = T 4 C C G C C = = = = = = = = = = = = = = = = = = (C) = = = = = (C) = = = = = = = = = = = = = = = = = = = ? = = = (T) (T) (C) (T) (T) (G) (D) (C) = (T) = = (G) = 0 D033 = = (A) = = = = = ? ? = = = = = = = = = G G = C A T T G A = = = = = = ? ? ? ? = = = = = A 3 T T A = = C = T G A G G C T A T C = A = T T = C = T C G = ? = = A A T T T ? ? ? = = = = = = = = = = = ? ? = = = = = = D = = = = = = = = = (C) = = = = = ? ? = = = = = = = = = T C = T G C C A G = = = = = = ? ? ? ? = = = = = T 2 C C G = = T = C A C A C G A T G T = T = C C = T = C A A = ? = = C G C C C ? ? ? = = = = = = = = = = = ? ? = = = = = = I = = = = = = = 0 D034 (C) (G) = (G) = (A) = (C) = (A) (A) = (G) = (G) = (A) = (T) = = = = G = ? A = = G = = = = = ? ? ? T = = G = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = (A) (A) (C) (G) (C) (C) (A) = (T) = (G) = (T) = = (T) (A) = (A) = (G) = (T) = (C) (G) = (A) = (A) = (G) = (A) = = = = A = ? G = = T = = = = = ? ? ? C = = A = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = (G) (T) (T) (C) (T) (T) (G) = (C) = (T) = (C) = = 0 D035 = = = = (G) = = = = = = = = = = = = (G) = = = (A) (C) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G = = = = = ? ? = = = = = = = = = = = = = = = C = = = = = = = = = G T T C T T G = C = T = C = = = = = = (A) = = = = = = = = = = = = (A) = = = (G) (T) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A A = = = = = ? ? = = = = = = = = = = = = = = = T = = = = = = = = = A A C G C C A = T = G = T = = 0 D036 = = = = = = = = (G) = (G) (G) = (T) (A) (G) = = (A) = = = = = = = = = = (T) (C) (C) (C) (A) (C) (G) (A) (G) (C) (T) (G) = = (T) (2) = = = = (T) C = T G A G G C T A T C = = G T = = = = T C = = = = = A A T T T G T C C = = = (G) = = = = = = T = = = = = = = = = I = = = G = = = = = = = = = (T) = (A) (A) = (A) (G) (A) = = (T) = = = = = = = = = = (G) (T) (T) (T) (G) (T) (A) (G) (A) (T) (G) (A) = = (A) (3) = = = = (C) T = C A C A C G A T G T = = A C = = = = C A = = = = = C G C C C A G G T = = = (A) = = = = = = C = = = = = = = = = D = = = A = 0 D037 = = (A) = = = = = = = = = = = = = = = = = (C) = = A = = = A T = = = = = C G A G = T G = = = = T T = = T = = = = = = = = = = = = = T G = = = T = = = = = ? = G = = = = = = = = = = (T) = = = = = = = = = = A C G C C A = T = G = = = = = = (C) = = = = = = = = = = = = = = = = = (G) = = G = = = G G = = = = = T A G A = G A = = = = C C = = C = = = = = = = = = = = = = A A = = = C = = = = = ? = C = = = = = = = = = = (C) = = = = = = = = = = T T C T T G = C = T = = = = 0 D038 = = = = = = = = G = G = = T A G = = A = = (G) = = = = = = = = = = = = = = = = = = = = = = = = (T) = = (T) = (C) ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (T) = = = = = = = = = = = = = = = = = = = = = = = = T = A = = A G A = = T = = (A) = = = = = = = = = = = = = = = = = = = = = = = = (C) = = (C) = (T) ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (C) = = = = = = = = = = = = = = = = 0 D039 = = = = = = = = ? = G G = T A G = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = A A = = T = = = = = = = = = = = T G = = = = C = = ? I = = = = = = = = = = = = = = C = = = = C = = = G T T C T T G = C = T = = G = = = = = = = = = ? = A A = A G A = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = G C = = C = = = = = = = = = = = A A = = = = T = = ? D = = = = = = = = = = = = = = T = = = = T = = = A A C G C C A = T = G = = A = 0 D040 = = = = = = = = = = = = = = = = = = = = = (A) (C) = (T) = = = = = = = = = = = = = = = = = = = (4) = = (A) = = = (T) = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (T) = (C) = = = = = = = = = = = = = = = = = = = (2) = = (G) = = = (C) = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = 0 E001 = = (A) = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = 2 = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = 4 = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E002 = = A A = = = = G ? G = = T A = G = A = = = = = = (T) (G) (A) = = = = = = = = = = = = = = = = (4) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C G = = = = T ? A = = A G = A = T = = = = = = (C) (A) (G) = = = = = = = = = = = = = = = = (2) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E003 = = = = = = (G) = = = = = = = = = = = = = = = = G = C A G = = = = = = = = = = = = = = = T 2 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = (T) = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = A = T G A = = = = = = = = = = = = = = = A 3 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = (C) = = = = = = = = = = = = = = = 0 E004 = = (A) = = = = = = = = = = = = = = = = = = = = A = T G A = = = = = = = = = = = = = = = A 3 = = G C = = = = = = = = = = = = = = A A = = = = = = = ? D = = = = = = = = ? = = = = = = A = = = = = = = = ? = = = = = = = = = = = A = = = (C) = = = = = = = = = = = = = = = = = = = = G = C A G = = = = = = = = = = = = = = = T 2 = = A A = = = = = = = = = = = = = = T G = = = = = = = ? I = = = = = = = = ? = = = = = = G = = = = = = = = ? = = = = = = = = = = = G = 0 E005 = = = (A) = = = = = = = (A) = = = (A) (G) = = = = = = (A) = = = = (T) = (T) (T) (T) (G) (T) (A) (G) (A) = (G) (A) = = (A) (3) = = = = = C = T G A G G C T A T C = = G T T = = = T C G ? = = = A A T T T G T C = = = = = = = T = A C T = = = = = = = = = = = A = = A = = = (G) = = = = = = = (G) = = = (G) (A) = = = = = = (G) = = = = (G) = (C) (C) (C) (A) (C) (G) (A) (G) = (T) (G) = = (T) (4) = = = = = T = C A C A C G A T G T = = A C C = = = C A A ? = = = C G C C C A G G = = = = = = = C = G T C = = = = = = = = = = = G = = G 0 E006 = = = = = = = = (G) = (G) (G) = (T) (A) (G) = = (A) = = = = G = = = A = = C C C A C G A G = T G = = T 4 = = = = T = = = = = = = = = = = = = (A) (A) = = = = = ? ? ? (D) = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = (T) = (A) (A) = (A) (G) (A) = = (T) = = = = A = = = G = = T T T G T A G A = G A = = A 3 = = = = C = = = = = = = = = = = = = (T) (G) = = = = = ? ? ? (I) = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = (G) = 0 E007 = = A A = = = = G = G = = T A = G = A = (C) = = (A) = = = = = = = = = = = = = = = = = = = (A) (3) (T) (T) = = = = (T) = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = C G = = = = T = A = = A G = A = T = (G) = = (G) = = = = = = = = = = = = = = = = = = = (T) (4) (C) (C) = = = = (C) = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = 0 E008 = = = = = = = = (G) = (G) (G) = (T) (A) (G) = = (A) = = = = (G) = (C) = = = = (C) = = = = = = = = = = = = = = = = ? ? ? T = C A C A C G A T G T = = A C C = = = C A A = = = = C G C C C A G G = = = = = = = C = G T C = = = = = = = = = = = G = = G = = = = = = = = (T) = (A) (A) = (A) (G) (A) = = (T) = = = = (A) = (T) = = = = (T) = = = = = = = = = = = = = = = = ? ? ? C = T G A G G C T A T C = = G T T = = = T C G = = = = A A T T T G T C = = = = = = = T = A C T = = = = = = = = = = = A = = A 0 E009 = = A A = = ? ? G = G = = T A = G = A = G = = = = C A G = = ? = = = = = = = = = = = = = 2 = = = = C = = = = = = = = = = = = = T G = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = G = = = = = = ? ? = = = = = = ? = = = = = G = = = C G = = ? ? T = A = = A G = A = T = C = = = = T G A = = ? = = = = = = = = = = = = = 4 = = = = T = = = = = = = = = = = = = A A = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = A = = = = = = ? ? = = = = = = ? = = = = = A = 0 E010 = = = A = = A = = = = G = = = G A = = = = = = A = = = = = = = = = = = = = = = = = = = A 3 T T ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = ? ? ? ? ? ? ? = = = G = = G = = = = A = = = A G = = = = = = G = = = = = = = = = = = = = = = = = = = T 4 C C ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = ? ? ? ? ? ? ? 0 E011 = = = = = = ? ? (G) = (G) (G) = (T) (A) (G) = = (A) = ? = = = = (C) (A) (G) = = = = = = = = = = = = = = = = (2) = = = = (C) = = = = = = = = = ? = = (T) (T) (G) = = (G) = ? = = = = = = ? = = = = = = = = (C) (A) = (T) (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? (T) = (A) (A) = (A) (G) (A) = = (T) = ? = = = = (T) (G) (A) = = = = = = = = = = = = = = = = (4) = = = = (T) = = = = = = = = = ? = = (A) (A) (A) = = (A) = ? = = = = = = ? = = = = = = = = (T) (G) = (C) (A) = = = = = = = = = = = = = = = = = = = = = = 0 E012 = = = (A) = = = = = = = (A) = = = (A) (G) = = = = = = ? = C A G = = = = = = = = = = = = = = = = 2 = = = = C = (C) = = = = = = = = = = = = = = = = = ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = ? ? = = = = = = = = (G) = = = = = = = (G) = = = (G) (A) = = = = = = ? = T G A = = = = = = = = = = = = = = = = 4 = = = = T = (T) = = = = = = = = = = = = = = = = = ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = ? ? = = = = = 0 E013 = = A = = = ? ? G = G G = T A G = = A = ? = = (A) = = = = = = ? ? ? ? ? = = = = = = = = (A) (3) (T) (T) ? ? ? = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = ? ? T = A A = A G A = = T = ? = = (G) = = = = = = ? ? ? ? ? = = = = = = = = (T) (4) (C) (C) ? ? ? = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E014 = = = = = = ? ? = = = = = = = = = = = = = = = = = (T) (G) (A) = = ? = = = = = = = = = = = = = (4) = = A A T = (T) = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = (C) (A) (G) = = ? = = = = = = = = = = = = = (2) = = G C C = (C) = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E015 = = = = A = = = G = G G = T A G = A A = = = = = = (C) (A) (G) = = = = = = = = = = = = = = = = (2) = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = G = = = T = A A = A G A = G T = = = = = = (T) (G) (A) = = = = = = = = = = = = = = = = (4) = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = 0 E016 = = A A = = ? ? G = G = = T A = G = A = C = = = = (T) (G) (A) = = = = = = ? = = = = = = = = (A) (3) (T) = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = ? ? = ? = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = C G = = ? ? T = A = = A G = A = T = G = = = = (C) (A) (G) = = = = = = ? = = = = = = = = (T) (2) (C) = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = ? ? = ? = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = 0 E017 = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = T 4 C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = A 3 T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = 0 E018 = = = = = = = = = = = = = = = = = = = = ? = = = = T G A = = = = = = = = = = = = = = = = 4 = = (A) (A) (T) = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = C A G = = = = = = = = = = = = = = = = 2 = = (G) (C) (C) = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E019 = = (A) = = = = = = = = = = = = = = = = = (C) = = G = = = A = G = = = = = = = = T = = = = = 4 = (T) = = = T = C A C A C G A T G T = = A C = = = = C A = = = = = C G C C C A G G T = = = = = = = = (G) (T) = = = = = = = = = = = = (G) = = (G) = = (C) = = = = = = = = = = = = = = = = = (G) = = A = = = G = T = = = = = = = = C = = = = = 2 = (C) = = = C = T G A G G C T A T C = = G T = = = = T C = = = = = A A T T T G T C C = = = = = = = = (A) (C) = = = = = = = = = = = = (A) = = (A) 0 E020 = = A = = = = = G = G G = T A G = = A = C = = = = T G = G = = = = = = = = = = = = = = = = = = = = (T) = (T) = = = = = = = = = = = = = = = = = (C) ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = T = A A = A G A = = T = G = = = = C A = T = = = = = = = = = = = = = = = = = = = = (C) = (C) = = = = = = = = = = = = = = = = = (T) ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E021 = = A = = = = = G = G G = T A G = = A = C = = = = T G A = = = = = = = = = = = = = = = = = = = = = T = = ? ? ? = = = = = = = = (A) (A) = = = = = = = ? (D) = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = C = = = = = T = A A = A G A = = T = G = = = = C A G = = = = = = = = = = = = = = = = = = = = = C = = ? ? ? = = = = = = = = (T) (G) = = = = = = = ? (I) = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = 0 E022 = = A = = = = = G = G G = T A G = = A = C = = G = = = A = = ? C C A ? G A G = T G = = T 4 = = G C = T = C A C A C G A T G T = = A C C = = = C A A = = = = C ? C C C A G G = = = = = = = C = G T = = = = = = = = = ? = = G = = G = = C = = = = = T = A A = A G A = = T = G = = A = = = G = = ? T T G ? A G A = G A = = A 3 = = A A = C = T G A G G C T A T C = = G T T = = = T C G = = = = A ? T T T G T C = = = = = = = T = A C = = = = = = = = = ? = = A = = A 0 E023 = = A A = = = = G = G = = T A = G = A = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C G = = = = T = A = = A G = A = T = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = 0.52 = 0.52 = = = = = = = = = = = = 0.52 = = 0.52 = = = = = = 0.53 = = = = = = = = = = = = = = = 0.53 0.53 0.53 = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = 1.00 ? 1.00 = = 0.79 = ? = 1.00 ? 1.00 1.00 1.00 1.00 = = = = = = = = = = ? = = = = = = = = 1.00 = = = = = 1.00 = = = = 1.00 = = = = = = = ? = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = ? ? = = = = = = = = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.88 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 = = 1.00 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = ? = = = = 1.00 1.00 = = 1.00 = = = 0.98 = = = = = = = = = = 0.98 0.98 0.98 = = 0.98 = 0.98 = = = = = 0.98 = = = = = = ? ? = 0.98 = = = = = = = = = = = = = = = = = = = = 0.58 = = = = = = = = = = = = = ? = 0.68 0.68 = 0.68 0.68 0.68 = = 0.68 = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = = ? = = = = = = = = ? ? ? = 1.00 = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = = = = = 1.00 = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = = = 0.50 = 0.50 0.50 = 0.50 0.50 0.50 = = 0.50 = = 0.50 = = = = = = = = = = = = = = = = ? = = = = = = = = 0.53 0.53 = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? 0.95 = = = = = = = = = = 1.00 = 1.00 1.00 = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = = 0.61 = = = = = = = 0.61 = = = 0.61 0.61 = = = = = 0.59 0.57 = 0.57 0.57 0.57 = = = = = = = = = = ? = = = = = = = = = = = = 0.85 = = = = = = = = = = = = = = = = = 0.85 = = = = = 0.85 = = = = = = = = = = 0.57 = = = = = = = = = = 0.91 0.91 0.91 0.91 0.91 0.91 0.91 = 0.91 = 0.91 = 0.91 = = = = 0.92 = = = = = = = = = = = = = = = = 0.92 0.92 0.92 = 0.92 = = = = = = = = = = = = = = ? = = = = 0.92 0.92 = = 0.92 = = = = = = = = = = = = = = 0.56 = = = = 0.56 = = = = = = = 0.56 = = = = = = = = = 0.56 0.56 0.56 = = = 0.59 = = = = = = = = = = = = = = = = = = = = = = 0.83 0.83 = = ? ? 0.83 = 0.83 = = 0.83 0.83 = 0.83 = 0.83 = 1.00 = 1.00 = = = ? 1.00 = = = = = = = = = = ? = = = = = = = = = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = = = = = = = 1.00 = = = = = = = ? ? 1.00 1.00 = 1.00 1.00 = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = 0.56 0.56 = = = 0.56 = 0.56 0.56 0.56 = = 0.56 0.56 = = = = = 0.55 = = = = = = = = = 1.00 1.00 1.00 ? ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = ? = = ? = = = = = = = ? = = ? ? ? ? ? ? ? = = = = = = = 0.52 0.52 = = 0.52 0.52 = 0.52 ? 0.52 = = 0.52 0.52 = = = 0.52 = = = 0.86 = 0.86 = = = 0.86 = = = = = = = = = = = = = = 0.86 0.86 0.86 = = = = 0.86 1.00 = 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = ? = 1.00 ? ? ? ? ? ? ? 1.00 = 1.00 = = 1.00 = ? = 0.99 = = = = = = = = = = = = = = = = 0.99 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = 1.00 ? ? = = = = 1.00 = = = = = = = = = = = = = = = = = = ? = = ? = = = = = 1.00 = = = = = 1.00 = = = = = 0.97 0.97 = = 0.97 0.97 = = = 0.97 = = = 0.97 = = = = 0.79 0.85 = 0.85 0.85 = = 0.85 = = = = = = = = 0.85 = = 0.85 = = = = = 0.85 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.60 = 0.60 = = = = = = = = = 0.61 0.61 0.61 0.61 0.61 0.61 = 0.61 = 0.61 = 0.61 = = = = = = = = = = = = = = = = = = = = = = = = 0.64 0.68 = 0.76 0.76 0.76 = = = = = = = ? ? ? = = = = = = 0.76 = = = 0.65 0.65 = 0.98 = = = = = = = = = = = 1.00 1.00 = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = = = 1.00 = ? = = = 1.00 = = = = = = = = ? ? = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = 0.71 = = = = 0.71 0.71 = = = = = 0.71 = = = = = = = = = ? 0.71 0.71 = 0.71 0.71 = = = = = = = = = = = = = = = = 0.63 = = = 0.63 = = = = = = = = = 0.69 = 0.69 0.69 = 0.69 0.69 0.69 = = 0.69 = ? 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = 0.62 = 1.00 = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = 0.89 = = 0.89 = = 0.89 0.89 = = = 0.89 = = = = = = 0.88 = = = = = = 0.91 = 0.91 = = = = = = = = 0.91 = = = = 0.91 0.91 0.91 0.91 0.91 0.91 0.91 = = = = = = = = = = = = = = = = = = 0.84 = = = = = 0.84 = = = = = = = = = = = = = = = = = = = ? = = = 0.66 0.66 0.66 0.66 0.66 0.66 0.66 0.66 = 0.66 = = 0.66 = = = 0.83 = = = = = ? ? = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = ? ? ? ? = = = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = ? = = 1.00 1.00 1.00 1.00 1.00 ? ? ? = = = = = = = = = = = ? ? = = = = = = 1.00 = = = = = = = 0.78 0.78 = 0.78 = 0.78 = 0.78 = 0.78 0.78 = 0.78 = 0.78 = 0.78 = 0.78 = = = = 0.95 = ? 0.95 = = 0.95 = = = = = ? ? ? 0.95 = = 0.95 = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = 0.95 = = = = = = = = = = = = = = = = = = = = 0.87 0.87 0.87 0.87 0.87 0.87 0.87 = 0.87 = 0.87 = 0.87 = = = = = = 0.53 = = = = = = = = = = = = 0.53 = = = 0.54 0.54 = 0.54 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.90 0.90 = = = = = ? ? = = = = = = = = = = = = = = = 0.90 = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 = = = = = = = = = = 0.84 = 0.84 0.84 = 0.84 0.84 0.84 = = 0.84 = = = = = = = = = = 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 0.88 = = 0.88 0.88 = = = = 0.88 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 0.73 = = = = = = 0.95 = = = = = = = = = 0.95 = = = 0.95 = = = 0.73 = = = = = = = = = = = = = = = = = 0.73 = = 1.00 = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = = 1.00 1.00 = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 = = = = = ? = 1.00 = = = = = = = = = = 0.78 = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = = = 1.00 = 1.00 = = 1.00 1.00 1.00 = = 1.00 = = 0.72 = = = = = = = = = = = = = = = = = = = = = = = = 0.58 = = 0.58 = 0.56 ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 0.55 = = = = = = = = = = = = = = = = = = = = = = = = ? = 0.93 0.93 = 0.93 0.93 0.93 = = 0.93 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.90 0.90 = = 1.00 = = = = = = = = = = = 1.00 1.00 = = = = 1.00 = = ? 1.00 = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = 0.85 0.85 = 0.85 = = = = = = = = = = = = = = = = = = = 0.84 = = 0.72 = = = 0.63 = = = = = = = = = = = = = = = = = 0.63 = = = = = = = = = = = = = = = = = = = = 0.64 = = = = = = = = = = = = = = = = = = = = = = = 0.87 = = = = = = = = = = = = = = = = = 0.97 = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 0.95 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = 1.00 ? 1.00 = = 1.00 1.00 = 1.00 = 1.00 = = = = = = 0.51 0.51 0.51 = = = = = = = = = = = = = = = = 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.51 = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.78 = = = = 0.72 = = = = = = = = = = = = = = = = = 0.85 = = = = = = = = = = = = = = = = = = = = 0.99 = 0.99 0.99 0.99 = = = = = = = = = = = = = = = 0.99 0.99 = = 0.98 0.98 = = = = = = = = = = = = = = 0.98 0.98 = = = = = = = ? 0.98 = = = = = = = = ? = = = = = = 0.98 = = = = = = = = ? = = = = = = = = = = = 0.98 = = = = 0.68 = = = = = = = 0.68 = = = 0.68 0.68 = = = = = = 0.77 = = = = 0.77 = 0.77 0.77 0.77 0.77 0.77 0.77 0.77 0.77 = 0.77 0.77 = = 0.77 0.77 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 ? = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = 0.63 = 0.63 0.63 = 0.63 0.63 0.63 = = 0.63 = = = = 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = = 1.00 = = = = = = = = = = = = = 0.87 0.87 = = = = = ? ? ? 0.87 = = = = = = = = = = = = = = = 0.87 = = = = = = = = = = = = = = = = = = = = 0.87 = = = 1.00 1.00 = = = = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 0.80 = = 0.70 = = = = = = = = = = = = = = = = = = = 0.70 0.70 0.70 0.70 = = = = 0.50 = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = 0.52 = 0.52 0.52 = 0.52 0.52 0.52 = = 0.52 = = = = 0.52 = 0.52 = = = = 0.52 = = = = = = = = = = = = = = = = ? ? ? 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = 1.00 = = 1.00 = = 1.00 1.00 = = ? ? 1.00 = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 1.00 = = ? = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = 1.00 = = = = = = ? ? = = = = = = ? = = = = = 1.00 = = = = 1.00 = = 1.00 = = = = 1.00 = = = 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = ? ? ? ? ? ? ? = = = = = = ? ? 0.70 = 0.70 0.70 = 0.70 0.70 0.70 = = 0.70 = ? = = = = 0.89 0.89 0.89 = = = = = = = = = = = = = = = = 0.89 = = = = 0.90 = = = = = = = = = ? = = 0.85 0.85 0.85 = = 0.85 = ? = = = = = = ? = = = = = = = = 0.85 0.85 = 0.85 0.85 = = = = = = = = = = = = = = = = = = = = = = = = = 0.81 = = = = = = = 0.81 = = = 0.81 0.81 = = = = = = ? = 0.96 0.96 0.96 = = = = = = = = = = = = = = = = 0.96 = = = = 0.94 = 0.80 = = = = = = = = = = = = = = = = = ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = 0.65 = = = = = = = = ? ? = = = = = = = 1.00 = = = ? ? 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = ? = = 0.53 = = = = = = ? ? ? ? ? = = = = = = = = 0.53 0.53 0.53 0.56 ? ? ? = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = 0.75 0.75 0.75 = = ? = = = = = = = = = = = = = 0.75 = = 0.95 0.95 0.95 = 0.76 = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = 0.55 0.55 0.55 = = = = = = = = = = = = = = = = 0.55 = = = 0.51 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.52 = = = = = = = = = = = = = = = = = = = = = = 0.90 0.90 = = ? ? 0.90 = 0.90 = = 0.90 0.90 = 0.90 = 0.90 = 0.95 = = = = 0.86 0.86 0.86 = = = = = = ? = = = = = = = = 0.86 0.86 0.86 = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = ? ? = ? = = = = = = = = = = = = = 0.63 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 = = = = = = = = = = = = = = = = = = = 1.00 1.00 0.92 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = 1.00 = = 0.81 0.81 0.81 = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.87 = = = = = = = = = = = = = = = = = 0.89 = = 0.91 = = = 0.91 = 0.91 = = = = = = = = 0.91 = = = = = 0.91 = 0.71 = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = 0.73 0.73 = = = = = = = = = = = = 0.73 = = 0.73 = = 0.99 = = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = 0.94 = = = = 0.94 0.94 = 0.94 = = = = = = = = = = = = = = = = = = = = 0.89 = 0.84 = = = = = = = = = = = = = = = = = 0.84 ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.99 = = = = = 0.99 = 0.99 0.99 = 0.99 0.99 0.99 = = 0.99 = 0.99 = = = = 0.98 0.98 0.98 = = = = = = = = = = = = = = = = = = = = = 0.96 = = ? ? ? = = = = = = = = 0.74 0.74 = = = = = = = ? 0.74 = = = = = = = = = = = = = = = = = 0.69 = = = = = = = = = = = = = = = = = = = = = = 0.95 = = = = = 0.95 = 0.95 0.95 = 0.95 0.95 0.95 = = 0.95 = 1.00 = = 1.00 = = = 1.00 = = ? 1.00 1.00 1.00 ? 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = = = = 1.00 ? 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 = 1.00 1.00 = = = = = = = = = ? = = 1.00 = = 1.00 = = 1.00 1.00 = = = = 1.00 = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = 0.75 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS