Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 001312 00000 ------------ C 0.93 1.00 0.97 T 0.07 0.00 0.03 0000 --- --- --- --- 001438 00000 ------------ - 0.02 0.00 0.01 + 0.98 1.00 0.99 0000 --- --- --- --- 001445 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 001658 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 001664 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 001783 00000 ------------ C 0.83 0.74 0.79 A 0.17 0.26 0.21 0000 --- --- --- --- 001835 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 001922 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 001966 00000 ------------ A 0.92 0.78 0.85 G 0.08 0.22 0.15 0000 --- --- --- --- 002174 00120 5' UTR C 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 002313 00259 5' UTR G 0.92 0.98 0.95 A 0.08 0.02 0.05 0000 --- --- --- --- 002796 00000 ------------ A 0.90 1.00 0.95 G 0.10 0.00 0.05 0000 --- --- --- --- 003498 00000 ------------ G 1.00 0.94 0.98 A 0.00 0.06 0.02 0000 --- --- --- --- 003504 00000 ------------ C 0.93 1.00 0.96 T 0.07 0.00 0.04 0000 --- --- --- --- 003623 00000 ------------ G 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 003864 00000 ------------ T 0.45 0.59 0.52 G 0.55 0.41 0.48 0000 --- --- --- --- 003903 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 004141 00000 ------------ A 0.89 1.00 0.94 C 0.11 0.00 0.06 0000 --- --- --- --- 004422 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 004566 00000 ------------ G 0.67 0.41 0.54 A 0.33 0.59 0.46 0000 --- --- --- --- 004624 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 004630 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 004729 00000 ------------ G 0.80 0.63 0.72 A 0.20 0.37 0.28 0000 --- --- --- --- 005019 00591 NON-SYN A 0.98 1.00 0.99 G 0.02 0.00 0.01 0055 GAA GGA GLU(E) GLY(G) 005039 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 005165 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 005172 00000 ------------ A 0.44 0.59 0.51 T 0.56 0.41 0.49 0000 --- --- --- --- 005304 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 005405 00000 ------------ A 0.67 0.41 0.54 G 0.33 0.59 0.46 0000 --- --- --- --- 005471 00000 ------------ G 0.79 0.63 0.71 A 0.21 0.37 0.29 0000 --- --- --- --- 005545 00000 ------------ C 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 005579 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 005612 00000 ------------ G 0.92 0.78 0.85 A 0.08 0.22 0.15 0000 --- --- --- --- 005834 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 005995 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 006024 00000 ------------ - 0.96 1.00 0.98 + 0.04 0.00 0.02 0000 --- --- --- --- 006165 00000 ------------ G 0.92 0.98 0.95 A 0.08 0.02 0.05 0000 --- --- --- --- 006172 00000 ------------ A 0.67 0.41 0.54 T 0.33 0.59 0.46 0000 --- --- --- --- 006251 00000 ------------ A 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 006273 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 006301 00000 ------------ G 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 006337 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 006743 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 006861 00000 ------------ G 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 006918 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 007020 00000 ------------ G 0.83 0.78 0.80 C 0.17 0.23 0.20 0000 --- --- --- --- 007236 00683 NON-SYN A 0.81 1.00 0.90 G 0.19 0.00 0.10 0086 ACC GCC THR(T) ALA(A) 007293 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 007327 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 007423 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 007517 00000 ------------ C 0.71 1.00 0.85 T 0.29 0.00 0.15 0000 --- --- --- --- 007742 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 007816 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 008477 00000 ------------ G 0.56 0.75 0.65 A 0.44 0.25 0.35 0000 --- --- --- --- 008761 00000 ------------ T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 009183 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 009870 00000 ------------ T 0.66 0.72 0.69 C 0.34 0.28 0.31 0000 --- --- --- --- 010334 00000 ------------ G 0.65 0.74 0.70 A 0.35 0.26 0.30 0000 --- --- --- --- 010383 00000 ------------ G 0.65 0.48 0.56 A 0.35 0.52 0.44 0000 --- --- --- --- 010571 00000 ------------ T 0.98 0.91 0.95 G 0.02 0.09 0.05 0000 --- --- --- --- 010595 00000 ------------ G 0.85 0.98 0.91 T 0.15 0.02 0.09 0000 --- --- --- --- 010923 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 010975 00000 ------------ C 0.96 0.92 0.94 T 0.04 0.08 0.06 0000 --- --- --- --- 011304 00000 ------------ C 0.96 0.89 0.92 T 0.04 0.11 0.08 0000 --- --- --- --- 011649 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 011667 00000 ------------ C 0.98 0.89 0.93 T 0.02 0.11 0.07 0000 --- --- --- --- 011693 00000 ------------ A 0.98 0.89 0.93 G 0.02 0.11 0.07 0000 --- --- --- --- 011705 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 012060 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 012149 00000 ------------ C 0.93 0.90 0.92 T 0.07 0.10 0.08 0000 --- --- --- --- 012280 00000 ------------ G 0.93 0.89 0.91 A 0.07 0.11 0.09 0000 --- --- --- --- 012321 00000 ------------ A 0.93 0.89 0.91 G 0.07 0.11 0.09 0000 --- --- --- --- 012372 00000 ------------ G 0.93 0.89 0.91 A 0.07 0.11 0.09 0000 --- --- --- --- 012563 00000 ------------ T 0.84 0.98 0.92 C 0.16 0.02 0.08 0000 --- --- --- --- 012774 00000 ------------ T 0.93 0.89 0.91 G 0.07 0.11 0.09 0000 --- --- --- --- 012814 00000 ------------ G 0.94 0.89 0.91 A 0.06 0.11 0.09 0000 --- --- --- --- 012913 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 012922 00000 ------------ G 0.94 1.00 0.97 C 0.06 0.00 0.03 0000 --- --- --- --- 012987 00000 ------------ T 0.67 0.74 0.70 A 0.33 0.26 0.30 0000 --- --- --- --- 013014 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013022* 013174 00000 ------------ C 0.83 0.89 0.86 T 0.17 0.11 0.14 0000 --- --- --- --- 013261 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 013297 00000 ------------ C 0.88 0.91 0.89 T 0.12 0.09 0.11 0000 --- --- --- --- 013461 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 013707 00000 ------------ A 0.64 0.90 0.76 G 0.36 0.10 0.24 0000 --- --- --- --- 013735 00000 ------------ A 0.86 0.88 0.87 C 0.14 0.12 0.13 0000 --- --- --- --- 013814 00000 ------------ C 0.68 0.38 0.54 T 0.32 0.62 0.46 0000 --- --- --- --- 014269 00000 ------------ - 0.04 0.00 0.02 + 0.96 1.00 0.98 0000 --- --- --- --- 014471 00000 ------------ T 0.92 0.91 0.91 C 0.08 0.09 0.09 0000 --- --- --- --- 014535 00000 ------------ T 0.77 0.91 0.84 C 0.23 0.09 0.16 0000 --- --- --- --- 014623 00000 ------------ C 0.91 0.91 0.91 T 0.09 0.09 0.09 0000 --- --- --- --- 014624 00000 ------------ A 0.91 0.91 0.91 G 0.09 0.09 0.09 0000 --- --- --- --- 014653 00000 ------------ C 0.91 0.91 0.91 A 0.09 0.09 0.09 0000 --- --- --- --- 014987 00000 ------------ A 0.93 0.91 0.92 G 0.07 0.09 0.08 0000 --- --- --- --- 015150 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 015195 00000 ------------ C 0.92 0.91 0.91 G 0.08 0.09 0.09 0000 --- --- --- --- 015220 00000 ------------ C 0.96 0.98 0.97 G 0.04 0.02 0.03 0000 --- --- --- --- 015270 00000 ------------ G 0.92 0.91 0.91 C 0.08 0.09 0.09 0000 --- --- --- --- 015275 00000 ------------ T 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 015282 00000 ------------ A 0.92 0.91 0.91 T 0.08 0.09 0.09 0000 --- --- --- --- 015452 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 015619 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 015687 00000 ------------ T 0.92 0.91 0.91 A 0.08 0.09 0.09 0000 --- --- --- --- 015718 00000 ------------ G 0.92 0.91 0.91 T 0.08 0.09 0.09 0000 --- --- --- --- 015900 00000 ------------ T 0.94 0.91 0.93 C 0.06 0.09 0.07 0000 --- --- --- --- 015979 00741 NON-SYN G 0.98 1.00 0.99 A 0.02 0.00 0.01 0105 CGG CAG ARG(R) GLN(Q) 016351 00000 ------------ A 0.81 0.98 0.89 T 0.19 0.02 0.11 0000 --- --- --- --- 016355 00000 ------------ A 0.60 0.89 0.74 T 0.40 0.11 0.26 0000 --- --- --- --- 016566 00000 ------------ A 0.54 0.80 0.67 G 0.46 0.20 0.33 0000 --- --- --- --- 016635 00000 ------------ C 0.92 0.91 0.91 T 0.08 0.09 0.09 0000 --- --- --- --- 016684 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 016892 00000 ------------ C 0.96 0.93 0.95 T 0.04 0.07 0.05 0000 --- --- --- --- 016949 00000 ------------ A 0.79 0.98 0.88 G 0.21 0.02 0.12 0000 --- --- --- --- 016984 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 017279 00000 ------------ C 0.81 0.97 0.88 T 0.19 0.03 0.12 0000 --- --- --- --- 017352 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 017391 00000 ------------ C 0.90 0.88 0.89 T 0.10 0.12 0.11 0000 --- --- --- --- 017403 00000 ------------ A 0.92 0.87 0.90 C 0.08 0.13 0.10 0000 --- --- --- --- 017456 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 017488 00000 ------------ A 0.95 0.89 0.93 G 0.05 0.11 0.07 0000 --- --- --- --- 017511 00000 ------------ - 0.98 0.91 0.95 + 0.02 0.09 0.05 0000 --- --- --- --- 017728 00000 ------------ C 0.95 1.00 0.97 T 0.05 0.00 0.03 0000 --- --- --- --- 017777 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 017784 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 017912 00000 ------------ C 0.83 1.00 0.91 T 0.17 0.00 0.09 0000 --- --- --- --- 018139 00000 ------------ G 0.88 1.00 0.93 C 0.12 0.00 0.07 0000 --- --- --- --- 018241 00000 ------------ C 0.93 0.91 0.92 A 0.07 0.09 0.08 0000 --- --- --- --- 018538 00000 ------------ C 0.96 0.98 0.97 T 0.04 0.02 0.03 0000 --- --- --- --- 018562 00000 ------------ G 0.94 0.93 0.93 A 0.06 0.07 0.07 0000 --- --- --- --- 018584 00000 ------------ C 0.92 0.91 0.91 T 0.08 0.09 0.09 0000 --- --- --- --- 018753 00000 ------------ C 0.93 0.91 0.92 T 0.07 0.09 0.08 0000 --- --- --- --- 018765 00000 ------------ C 0.92 0.91 0.91 T 0.08 0.09 0.09 0000 --- --- --- --- 018791 00000 ------------ T 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 018912 00000 ------------ A 0.93 0.91 0.92 G 0.07 0.09 0.08 0000 --- --- --- --- 018993 00000 ------------ G 0.93 0.91 0.92 T 0.07 0.09 0.08 0000 --- --- --- --- 019157 00000 ------------ G 0.93 0.91 0.92 C 0.07 0.09 0.08 0000 --- --- --- --- 019613 00000 ------------ T 0.75 0.96 0.85 C 0.25 0.04 0.15 0000 --- --- --- --- 019697 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 019732 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 020028 00000 ------------ G 0.83 0.98 0.90 A 0.17 0.02 0.10 0000 --- --- --- --- 020056 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 020068 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 020169 00000 ------------ C 0.85 0.98 0.91 T 0.15 0.02 0.09 0000 --- --- --- --- 020297 01086 NON-SYN A 0.83 0.91 0.87 G 0.17 0.09 0.13 0220 AAG AGG LYS(K) ARG(R) 020382 01171 SYNON C 0.94 1.00 0.97 T 0.06 0.00 0.03 0248 ACC ACT THR(T) THR(T) 020391 01180 SYNON C 1.00 0.98 0.99 T 0.00 0.02 0.01 0251 CAC CAT HIS(H) HIS(H) 020435 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 020609 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 020651 00000 ------------ G 0.98 0.91 0.95 A 0.02 0.09 0.05 0000 --- --- --- --- 020700 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 020901 00000 ------------ C 1.00 0.93 0.97 T 0.00 0.07 0.03 0000 --- --- --- --- 021162 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 021414 00000 ------------ G 0.98 0.91 0.95 A 0.02 0.09 0.05 0000 --- --- --- --- 021590 00000 ------------ T 0.97 0.91 0.94 C 0.03 0.09 0.06 0000 --- --- --- --- 021611 00000 ------------ G 0.97 1.00 0.99 C 0.03 0.00 0.01 0000 --- --- --- --- 023456 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 023468 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 023514 01222 SYNON C 1.00 0.98 0.99 T 0.00 0.02 0.01 0265 ACC ACT THR(T) THR(T) 023562 01270 NON-SYN C 0.96 1.00 0.98 A 0.04 0.00 0.02 0281 AAC AAA ASN(N) LYS(K) 023669 01377 NON-SYN T 0.98 0.88 0.93 C 0.02 0.12 0.07 0317 CTC CCC LEU(L) PRO(P) 023715 01423 SYNON C 0.98 1.00 0.99 A 0.02 0.00 0.01 0332 CTC CTA LEU(L) LEU(L) 023766 01474 3' UTR G 0.76 1.00 0.87 A 0.24 0.00 0.13 0000 --- --- --- --- 023833 01541 3' UTR G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 024184 00000 ------------ T 0.71 1.00 0.86 A 0.29 0.00 0.14 0000 --- --- --- --- 024274 00000 ------------ T 0.73 1.00 0.87 C 0.27 0.00 0.13 0000 --- --- --- --- 024343 00000 ------------ C 0.73 1.00 0.87 G 0.27 0.00 0.13 0000 --- --- --- --- 024355 00000 ------------ T 0.73 1.00 0.87 C 0.27 0.00 0.13 0000 --- --- --- --- 024402 00000 ------------ T 0.73 1.00 0.87 C 0.27 0.00 0.13 0000 --- --- --- --- 024483 00000 ------------ A 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 024610 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 024618 00000 ------------ G 0.73 1.00 0.87 A 0.27 0.00 0.13 0000 --- --- --- --- 024678 00000 ------------ A 0.95 1.00 0.98 T 0.05 0.00 0.02 0000 --- --- --- --- 024695 00000 ------------ - 0.09 0.00 0.05 + 0.91 1.00 0.95 0000 --- --- --- --- 024782 00000 ------------ C 0.73 1.00 0.85 T 0.27 0.00 0.15 0000 --- --- --- --- 024809 00000 ------------ - 0.94 1.00 0.97 + 0.06 0.00 0.03 0000 --- --- --- --- 025009 00000 ------------ T 0.73 1.00 0.86 G 0.27 0.00 0.14 0000 --- --- --- --- 025081 00000 ------------ G 1.00 0.91 0.96 A 0.00 0.09 0.04 0000 --- --- --- --- 025092 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 025158 00000 ------------ A 0.77 0.93 0.85 G 0.23 0.07 0.15 0000 --- --- --- --- 025254 00000 ------------ G 1.00 0.91 0.96 A 0.00 0.09 0.04 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 001438: ACAAAA 006024: AAAA 014269: G 017511: G 024695: CT 024809: CTTTTCTTTT The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 013022 C 0.42 0.30 0.36 G 0.33 0.26 0.30 T 0.25 0.43 0.34