Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 001421 -- 12 23 35 +- 6 0 6 ++ 4 0 4 3.035 0.000 10.914 001916 -- 14 11 25 +- 4 5 9 ++ 5 7 12 7.987 6.999 15.194 002025 CC 22 14 36 CT 0 5 5 TT 1 3 4 23.000 3.414 13.635 002725 AA 22 19 41 AG 0 1 1 GG 0 0 0 0.000 0.013 0.006 002728 CC 0 1 1 CT 0 2 2 TT 22 17 39 0.000 3.951 9.476 003391 CC 0 1 1 CT 0 8 8 TT 22 14 36 0.000 0.011 0.450 004063 CC 0 0 0 CT 1 0 1 TT 16 19 35 0.016 0.000 0.007 006466 CC 22 23 45 CT 1 0 1 TT 1 0 1 9.967 0.000 20.206 006715 AA 2 8 10 AG 6 8 14 GG 15 7 22 1.252 2.112 5.534 006815 CC 3 0 3 CT 2 0 2 TT 18 23 41 11.185 0.000 24.258 006968 GG 16 9 25 GT 2 7 9 TT 5 7 12 13.797 3.439 15.194 007406 AA 17 7 24 AG 4 9 13 GG 3 5 8 5.874 0.383 5.160 007632 AA 0 0 0 AT 2 0 2 TT 22 23 45 0.045 0.000 0.022 007685 AA 24 22 46 AG 0 1 1 GG 0 0 0 0.000 0.011 0.005 008216 CC 23 20 43 CT 0 2 2 TT 0 0 0 0.000 0.050 0.023 009792 AA 0 0 0 AG 1 1 2 GG 23 22 45 0.011 0.011 0.022 009817 GG 20 23 43 GT 3 0 3 TT 1 0 1 2.617 0.000 6.306 010523 CC 17 7 24 CT 4 9 13 TT 3 7 10 5.874 1.087 7.257 010640 CC 5 7 12 CT 2 7 9 TT 17 8 25 14.519 2.888 15.194 010679 AA 0 0 0 AG 0 1 1 GG 24 21 45 0.000 0.012 0.006 010879 AA 24 19 43 AG 0 1 1 GG 0 0 0 0.000 0.013 0.006 023854 AA 11 21 32 AG 5 0 5 GG 7 0 7 6.999 0.000 19.422 025021 CC 1 0 1 CT 4 2 6 TT 18 20 38 1.252 0.050 1.407 025067 AA 5 6 11 AT 2 7 9 TT 16 8 24 13.797 2.249 13.396 025086 GG 1 0 1 GT 1 0 1 TT 21 22 43 9.521 0.000 19.316 025111 AA 23 18 41 AG 0 3 3 GG 0 1 1 0.000 2.296 5.985 025179 AA 0 1 1 AG 0 2 2 GG 23 19 42 0.000 4.455 10.228 025186 GG 0 1 1 GT 0 3 3 TT 23 18 41 0.000 2.296 5.985 026502 AA 5 7 12 AG 2 7 9 GG 17 8 25 14.519 2.888 15.194 028059 CC 21 19 40 CT 0 1 1 TT 0 0 0 0.000 0.013 0.006 028160 AA 0 0 0 AG 2 1 3 GG 21 22 43 0.048 0.011 0.052 028745 AA 22 13 35 AG 0 7 7 GG 0 2 2 0.000 0.505 3.273 029607 AA 2 7 9 AG 5 8 13 GG 16 8 24 2.200 2.112 6.214 029949 CC 18 22 40 CT 1 0 1 TT 0 0 0 0.014 0.000 0.006 030105 GG 6 0 6 GT 5 1 6 TT 10 20 30 5.374 0.012 13.923 030495 AA 1 0 1 AG 0 0 0 GG 22 23 45 23.000 0.000 46.000 031689 CC 18 20 38 CT 2 1 3 TT 0 0 0 0.055 0.012 0.059 040792 CC 12 22 34 CT 5 0 5 TT 5 0 5 5.374 0.000 15.744 040800 AA 0 0 0 AG 1 0 1 GG 19 22 41 0.013 0.000 0.006 041315 CC 21 23 44 CT 0 0 0 TT 1 0 1 22.000 0.000 45.000 041479 AA 7 0 7 AG 5 0 5 GG 11 23 34 6.999 0.000 20.548 041744 CC 0 0 0 CG 1 0 1 GG 21 23 44 0.012 0.000 0.006 041841 GG 11 23 34 GT 5 0 5 TT 6 0 6 5.965 0.000 18.282 042174 AA 0 1 1 AG 0 0 0 GG 18 20 38 0.000 21.000 39.000 043002 CC 20 20 40 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 043479 CC 1 0 1 CT 4 0 4 TT 15 21 36 0.930 0.000 3.231 043498 CC 20 20 40 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 043745 CC 21 22 43 CT 2 1 3 TT 0 0 0 0.048 0.011 0.052 043945 AA 5 8 13 AG 2 5 7 GG 15 8 23 13.072 5.762 18.493 045534 AA 5 8 13 AG 3 6 9 GG 14 8 22 9.948 4.545 14.449 045672 CC 17 22 39 CT 4 0 4 TT 0 0 0 0.233 0.000 0.102 058095 AA 0 0 0 AG 1 1 2 GG 21 22 43 0.012 0.011 0.023 058114 CC 5 9 14 CT 4 6 10 TT 14 8 22 7.987 5.239 13.999 058150 AA 1 0 1 AC 1 0 1 CC 22 23 45 9.967 0.000 20.206 058597 CC 20 21 41 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 058651 CC 5 9 14 CT 5 6 11 TT 14 8 22 6.369 5.239 12.609 058904 GG 19 23 42 GT 4 0 4 TT 1 0 1 1.361 0.000 3.895 058933 CC 22 22 44 CG 2 1 3 GG 0 0 0 0.045 0.011 0.051 059365 GG 21 19 40 GT 0 2 2 TT 0 1 1 0.000 4.455 9.727 059372 CC 19 22 41 CT 1 0 1 TT 1 0 1 8.629 0.000 18.427 059424 AA 18 23 41 AG 3 0 3 GG 0 0 0 0.124 0.000 0.055 059448 AA 6 9 15 AG 6 6 12 GG 12 8 20 5.227 5.239 10.988 059641 CC 1 0 1 CG 1 0 1 GG 22 23 45 9.967 0.000 20.206 060102 CC 0 0 0 CG 1 0 1 GG 18 20 38 0.014 0.000 0.007 060424 AA 7 8 15 AT 9 6 15 TT 5 7 12 0.383 3.834 3.341 060850 AA 0 1 1 AT 0 0 0 TT 23 22 45 0.000 23.000 46.000 061188 AA 0 0 0 AG 1 1 2 GG 23 21 44 0.011 0.012 0.023 061319 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 061616 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 062071 AA 7 9 16 AG 8 6 14 GG 9 8 17 2.593 5.239 7.671 063802 CC 20 22 42 CT 4 1 5 TT 0 0 0 0.198 0.011 0.148 063967 CC 20 22 42 CT 4 1 5 TT 0 0 0 0.198 0.011 0.148 064042 CC 8 9 17 CT 9 7 16 TT 7 7 14 1.484 3.439 4.704 064256 CC 1 0 1 CT 1 0 1 TT 22 23 45 9.967 0.000 20.206 064423 CC 0 0 0 CT 0 1 1 TT 24 22 46 0.000 0.011 0.005 064505 AA 19 21 40 AG 2 2 4 GG 0 0 0 0.053 0.048 0.100 064509 AA 0 0 0 AG 1 0 1 GG 20 23 43 0.012 0.000 0.006 064950 AA 1 0 1 AT 0 0 0 TT 22 23 45 23.000 0.000 46.000 064974 AA 18 22 40 AG 5 1 6 GG 0 0 0 0.342 0.011 0.224 065100 AA 23 21 44 AT 0 2 2 TT 0 0 0 0.000 0.048 0.023 065359 CC 14 8 22 CT 5 6 11 TT 5 9 14 6.369 5.239 12.609 065879 AA 2 6 8 AG 6 7 13 GG 15 8 23 1.252 2.249 4.832 066050 CC 22 22 44 CT 1 0 1 TT 1 0 1 9.967 0.000 19.761 066332 GG 21 23 44 GT 2 0 2 TT 1 0 1 4.959 0.000 10.729 067253 AA 22 23 45 AT 1 0 1 TT 1 0 1 9.967 0.000 20.206 067643 AA 0 1 1 AG 0 0 0 GG 20 19 39 0.000 20.000 40.000 067833 AA 0 0 0 AC 1 1 2 CC 22 22 44 0.011 0.011 0.023 067845 GG 1 0 1 GT 1 0 1 TT 21 23 44 9.521 0.000 19.761 067997 AA 1 0 1 AG 1 0 1 GG 21 23 44 9.521 0.000 19.761 068482 AA 1 0 1 AG 0 0 0 GG 23 23 46 24.000 0.000 47.000 068743 CC 0 0 0 CG 1 0 1 GG 22 22 44 0.011 0.000 0.006 069204 AA 5 2 7 AG 6 5 11 GG 4 6 10 0.579 0.294 1.179 069318 AA 0 0 0 AG 1 0 1 GG 20 22 42 0.012 0.000 0.006 069349 CC 2 7 9 CT 6 7 13 TT 16 9 25 1.407 3.439 6.585 070509 AA 0 0 0 AC 0 1 1 CC 19 16 35 0.000 0.016 0.007 071551 CC 0 0 0 CT 4 1 5 TT 18 22 40 0.220 0.011 0.156 071657 CC 21 21 42 CT 0 1 1 TT 0 1 1 0.000 9.521 18.871 071783 AA 5 7 12 AG 9 7 16 GG 7 8 15 0.383 2.888 2.734 071884 AA 1 7 8 AG 0 7 7 GG 20 8 28 21.000 2.888 14.693 071930 CC 1 0 1 CT 1 0 1 TT 22 23 45 9.967 0.000 20.206 072067 AA 1 0 1 AG 2 0 2 GG 21 23 44 4.959 0.000 10.729 072120 AA 0 0 0 AC 2 0 2 CC 22 23 45 0.045 0.000 0.022 072531 AA 0 7 7 AC 0 6 6 CC 20 8 28 0.000 3.834 14.919 072717 AA 4 8 12 AG 5 6 11 GG 12 8 20 4.121 4.545 9.500 073785 AA 7 7 14 AC 7 4 11 CC 8 9 17 2.888 7.103 9.417 074526 CC 5 6 11 CG 4 5 9 GG 6 9 15 3.233 4.772 8.027 074645 GG 16 22 38 GT 2 1 3 TT 1 0 1 3.698 0.011 5.505 074823 AA 18 22 40 AG 2 0 2 GG 1 0 1 4.203 0.000 9.727 074851 AA 4 7 11 AG 7 7 14 GG 9 8 17 1.284 2.888 4.286 075051 CC 22 22 44 CG 1 0 1 GG 1 0 1 9.967 0.000 19.761 076860 AA 5 7 12 AG 4 4 8 GG 3 3 6 1.185 1.998 3.185 077134 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 077792 AA 0 0 0 AT 1 2 3 TT 22 21 43 0.011 0.048 0.052 078045 CC 21 20 41 CT 0 0 0 TT 1 0 1 22.000 0.000 42.000 078168 CC 6 9 15 CT 6 6 12 TT 12 8 20 5.227 5.239 10.988 081941 CC 22 23 45 CT 1 0 1 TT 1 0 1 9.967 0.000 20.206 082540 AA 23 20 43 AG 0 3 3 GG 0 0 0 0.000 0.112 0.052 082699 CC 14 6 20 CT 4 4 8 TT 3 9 12 4.738 6.134 13.611 082862 AA 22 18 40 AG 1 1 2 GG 0 0 0 0.011 0.014 0.025 083367 AA 8 8 16 AT 8 7 15 TT 5 7 12 1.037 2.888 3.773 083425 AA 16 22 38 AT 2 1 3 TT 2 0 2 7.389 0.011 12.237 083429 AA 9 8 17 AG 5 6 11 GG 4 9 13 2.851 5.239 8.610 083505 CC 11 8 19 CT 4 6 10 TT 5 9 14 6.282 5.239 12.011 084703 CC 16 9 25 CG 5 7 12 GG 0 7 7 0.383 3.439 5.234 085962 GG 1 0 1 GT 1 0 1 TT 22 23 45 9.967 0.000 20.206 086279 AA 21 23 44 AG 1 0 1 GG 1 0 1 9.521 0.000 19.761 086411 AA 0 0 0 AG 1 0 1 GG 20 23 43 0.012 0.000 0.006 086552 CC 10 9 19 CT 10 7 17 TT 4 7 11 0.296 3.439 3.056 087057 CC 23 23 46 CT 0 0 0 TT 1 0 1 24.000 0.000 47.000 087411 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 087519 GG 0 0 0 GT 1 1 2 TT 22 22 44 0.011 0.011 0.023 087635 AA 22 22 44 AT 1 1 2 TT 0 0 0 0.011 0.011 0.023 088173 CC 1 0 1 CT 1 0 1 TT 22 23 45 9.967 0.000 20.206 088495 AA 13 8 21 AG 5 7 12 GG 4 7 11 4.536 2.888 7.941 088747 AA 7 5 12 AT 4 8 12 TT 13 9 22 9.967 1.352 9.414 088891 CC 22 21 43 CT 1 1 2 TT 0 0 0 0.011 0.012 0.023 088904 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 088992 CC 1 6 7 CT 0 11 11 TT 23 6 29 24.000 0.043 7.542 089028 AA 3 2 5 AG 6 5 11 GG 13 16 29 2.148 2.200 4.515 089071 CC 0 0 0 CT 0 2 2 TT 22 21 43 0.000 0.048 0.023 089212 AA 3 0 3 AG 3 0 3 GG 17 23 40 7.887 0.000 18.288 089389 CC 22 23 45 CG 2 0 2 GG 0 0 0 0.045 0.000 0.022 089593 GG 1 0 1 GT 0 0 0 TT 22 23 45 23.000 0.000 46.000 089702 CC 22 21 43 CT 0 2 2 TT 0 0 0 0.000 0.048 0.023 089704 CC 0 0 0 CT 0 2 2 TT 23 21 44 0.000 0.048 0.023 089707 AA 3 4 7 AT 5 8 13 TT 14 11 25 3.414 1.252 4.385 090315 AA 21 21 42 AC 1 0 1 CC 0 0 0 0.012 0.000 0.006 091107 AA 20 23 43 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 091203 CC 21 18 39 CT 0 5 5 TT 0 0 0 0.000 0.342 0.160 091476 CC 0 0 0 CG 0 1 1 GG 24 20 44 0.000 0.012 0.006 091498 CC 24 10 34 CG 0 8 8 GG 0 3 3 0.000 0.429 4.704 091701 CC 21 21 42 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 091874 GG 0 0 0 GT 0 1 1 TT 21 21 42 0.000 0.012 0.006 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001421: g 001916: g