Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 001007 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 001159 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 001371 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 001551 CC 19 22 41 CT 2 0 2 TT 0 0 0 0.053 0.000 0.024 001847 AA 0 0 0 AG 0 1 1 GG 21 22 43 0.000 0.011 0.006 001882 AA 0 0 0 AC 0 1 1 CC 21 21 42 0.000 0.012 0.006 002020 AA 20 22 42 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 002094 -- 0 0 0 +- 0 1 1 ++ 21 21 42 0.000 0.012 0.006 002157 CC 0 0 0 CG 2 3 5 GG 21 19 40 0.048 0.118 0.156 002183 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 002400 AA 14 18 32 AG 10 2 12 GG 0 0 0 1.662 0.055 1.097 002460 -- 0 0 0 +- 1 0 1 ++ 23 21 44 0.011 0.000 0.006 002632 AA 0 0 0 AG 1 0 1 GG 23 21 44 0.011 0.000 0.006 002833 CC 8 0 8 CT 11 3 14 TT 5 20 25 0.114 0.112 4.651 003150 GG 23 23 46 GT 1 0 1 TT 0 0 0 0.011 0.000 0.005 003231 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 003287 AA 0 0 0 AG 8 0 8 GG 15 22 37 1.019 0.000 0.428 003896 AA 0 0 0 AG 0 1 1 GG 16 22 38 0.000 0.011 0.007 004039 AA 11 23 34 AC 5 0 5 CC 0 0 0 0.549 0.000 0.183 004093 AA 18 23 41 AG 1 0 1 GG 0 0 0 0.014 0.000 0.006 004468 -- 0 0 0 +- 1 0 1 ++ 22 23 45 0.011 0.000 0.006 004540 CC 0 0 0 CT 1 0 1 TT 18 23 41 0.014 0.000 0.006 004781 CC 3 0 3 CT 4 0 4 TT 12 23 35 3.971 0.000 12.518 005009 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 005066 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 005217 AA 17 19 36 AC 6 3 9 CC 0 0 0 0.517 0.118 0.556 005496 AA 10 0 10 AG 7 6 13 GG 1 17 18 0.025 0.517 4.761 011139 AA 8 0 8 AG 8 6 14 GG 3 17 20 0.172 0.517 3.155 011218 -- 0 0 0 +- 1 0 1 ++ 23 23 46 0.011 0.000 0.005 011252 AA 20 23 43 AG 2 0 2 GG 2 0 2 9.197 0.000 19.489 011254 AA 4 0 4 AG 6 0 6 GG 14 23 37 3.744 0.000 11.583 011509 -- 0 0 0 +- 10 3 13 ++ 14 20 34 1.662 0.112 1.211 012406 AA 12 23 35 AG 2 0 2 GG 2 0 2 5.565 0.000 15.919 012600 AA 0 0 0 AG 7 3 10 GG 11 20 31 1.049 0.112 0.791 012954 GG 22 21 43 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 025894 CC 1 0 1 CT 10 3 13 TT 13 15 28 0.296 0.149 0.127 025976 AA 0 0 0 AG 1 0 1 GG 23 18 41 0.011 0.000 0.006 026207 CC 0 0 0 CG 1 0 1 GG 23 18 41 0.011 0.000 0.006 026728 CC 22 20 42 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 026806 CC 0 0 0 CT 0 1 1 TT 23 19 42 0.000 0.013 0.006 026930 AA 22 19 41 AG 1 1 2 GG 0 0 0 0.011 0.013 0.024 027505 -- 0 0 0 +- 1 0 1 ++ 21 20 41 0.012 0.000 0.006 027599 CC 0 0 0 CT 1 0 1 TT 21 20 41 0.012 0.000 0.006 027740 AA 13 18 31 AG 10 3 13 GG 0 0 0 1.775 0.124 1.322 027764 CC 22 21 43 CT 2 0 2 TT 0 0 0 0.045 0.000 0.023 027793 CC 24 19 43 CT 0 1 1 TT 0 0 0 0.000 0.013 0.006 027812 AA 0 0 0 AT 1 0 1 TT 23 20 43 0.011 0.000 0.006 034802 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 034866 -- 0 0 0 +- 2 3 5 ++ 22 20 42 0.045 0.112 0.148 034877 CC 8 0 8 CG 10 3 13 GG 6 20 26 0.621 0.112 5.814 034898 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 035909 AA 0 0 0 AC 1 0 1 CC 22 23 45 0.011 0.000 0.006 036194 GG 0 0 0 GT 0 1 1 TT 24 22 46 0.000 0.011 0.005 036805 AA 19 19 38 AG 1 0 1 GG 0 0 0 0.013 0.000 0.007 037178 AA 0 0 0 AC 1 0 1 CC 18 18 36 0.014 0.000 0.007 046664 -- 11 14 25 +- 8 1 9 ++ 4 0 4 1.252 0.018 3.844 046860 AA 0 0 0 AG 1 0 1 GG 23 18 41 0.011 0.000 0.006 047021 AA 0 0 0 AC 1 0 1 CC 21 18 39 0.012 0.000 0.006 047361 CC 24 18 42 CT 0 5 5 TT 0 0 0 0.000 0.342 0.148 047614 AA 0 0 0 AG 0 2 2 GG 23 21 44 0.000 0.048 0.023 048064 CC 0 0 0 CT 1 0 1 TT 23 22 45 0.011 0.000 0.006 048256 CC 0 0 0 CG 1 0 1 GG 19 21 40 0.013 0.000 0.006 048709 GG 2 12 14 GT 10 9 19 TT 9 0 9 0.107 1.562 0.284 048713 AA 13 19 32 AG 8 2 10 GG 0 0 0 1.163 0.053 0.767 048925 AA 14 21 35 AG 7 0 7 GG 0 0 0 0.840 0.000 0.347 049152 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 049196 CC 0 0 0 CT 1 0 1 TT 23 22 45 0.011 0.000 0.006 056503 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 056528 CC 0 0 0 CT 0 1 1 TT 23 22 45 0.000 0.011 0.006 056739 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 056810 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.011 0.000 0.005 056929 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 057055 AA 3 0 3 AG 5 0 5 GG 16 23 39 4.041 0.000 11.065 057149 CC 0 0 0 CT 0 1 1 TT 24 22 46 0.000 0.011 0.005 057239 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 057592 CC 3 0 3 CG 5 0 5 GG 16 23 39 4.041 0.000 11.065 058029 -- 2 13 15 +- 10 7 17 ++ 10 1 11 0.050 0.002 1.762 058096 -- 0 0 0 +- 1 0 1 ++ 21 20 41 0.012 0.000 0.006 058240 AA 0 0 0 AG 7 0 7 GG 15 20 35 0.787 0.000 0.347 058508 AA 14 18 32 AG 4 0 4 GG 3 0 3 4.738 0.000 11.422 065806 CC 0 0 0 CT 2 2 4 TT 19 19 38 0.053 0.053 0.105 065936 CC 9 20 29 CT 8 3 11 TT 4 0 4 0.777 0.112 3.012 066064 AA 20 23 43 AT 1 0 1 TT 0 0 0 0.012 0.000 0.006 066161 GG 0 0 0 GT 1 1 2 TT 20 22 42 0.012 0.011 0.024 066200 AA 0 0 0 AG 2 0 2 GG 19 23 42 0.053 0.000 0.024 066231 AA 14 22 36 AG 7 0 7 GG 0 0 0 0.840 0.000 0.338 066256 CC 0 0 0 CT 0 1 1 TT 20 21 41 0.000 0.012 0.006 066776 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 067477 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 067762 AA 9 19 28 AT 8 2 10 TT 4 0 4 0.777 0.053 3.604 067780 CC 21 1 22 CT 0 12 12 TT 0 8 8 0.000 1.714 5.357 069869 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 070025 AA 14 19 33 AG 10 3 13 GG 0 0 0 1.662 0.118 1.246 070157 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 071104 CC 0 7 7 CT 0 11 11 TT 20 2 22 0.000 0.601 5.184 071323 CC 0 0 0 CT 0 1 1 TT 23 22 45 0.000 0.011 0.006 071419 CC 0 0 0 CT 0 1 1 TT 23 22 45 0.000 0.011 0.006 082771 CC 6 18 24 CT 10 1 11 TT 4 0 4 0.002 0.014 2.147 083099 AA 0 0 0 AG 0 3 3 GG 24 20 44 0.000 0.112 0.051 083239 AA 4 0 4 AT 9 3 12 TT 10 20 30 0.591 0.112 2.504 083507 AA 18 23 41 AG 3 0 3 GG 0 0 0 0.124 0.000 0.055 083543 AA 0 0 0 AG 3 0 3 GG 19 23 42 0.118 0.000 0.054 084104 GG 5 0 5 GT 11 3 14 TT 8 19 27 0.114 0.118 2.044 084348 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 084378 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 084415 CC 0 0 0 CT 8 0 8 TT 16 22 38 0.960 0.000 0.417 085483 CC 5 0 5 CG 10 3 13 GG 9 19 28 0.490 0.118 2.792 086094 AA 12 19 31 AG 8 2 10 GG 4 0 4 1.500 0.053 4.201 087732 CC 20 14 34 CT 4 0 4 TT 0 0 0 0.198 0.000 0.117 088409 CC 11 19 30 CT 8 3 11 TT 4 0 4 1.252 0.118 3.187 088569 AA 5 0 5 AG 9 3 12 GG 9 20 29 0.857 0.112 3.687 088790 CC 0 0 0 CT 4 0 4 TT 6 18 24 0.625 0.000 0.166 089314 AA 4 0 4 AC 7 2 9 CC 13 19 32 2.476 0.053 5.428 089424 AA 23 19 42 AG 0 2 2 GG 0 0 0 0.000 0.053 0.024 089483 AA 0 0 0 AT 1 0 1 TT 22 21 43 0.011 0.000 0.006 089666 AA 0 0 0 AG 4 3 7 GG 18 18 36 0.220 0.124 0.338 094286 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 094736 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 095120 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 097263 GG 10 19 29 GT 7 3 10 TT 3 0 3 0.818 0.118 2.182 097268 CC 3 0 3 CT 7 3 10 TT 10 19 29 0.818 0.118 2.182 097312 AA 21 23 44 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 097918 AA 0 0 0 AC 8 0 8 CC 16 22 38 0.960 0.000 0.417 098318 AA 0 0 0 AG 2 0 2 GG 21 21 42 0.048 0.000 0.024 098373 AA 14 19 33 AG 9 2 11 GG 0 0 0 1.361 0.053 0.898 098505 AA 23 23 46 AC 1 0 1 CC 0 0 0 0.011 0.000 0.005 098692 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 098705 AA 23 23 46 AT 1 0 1 TT 0 0 0 0.011 0.000 0.005 098818 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 098982 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 099092 AA 0 0 0 AG 0 2 2 GG 24 21 45 0.000 0.048 0.022 099178 AA 0 0 0 AT 0 1 1 TT 24 22 46 0.000 0.011 0.005 100242 CC 24 3 27 CT 0 12 12 TT 0 8 8 0.000 0.209 7.134 103674 AA 14 20 34 AG 6 3 9 GG 3 0 3 2.407 0.112 3.687 103712 CC 0 0 0 CT 2 0 2 TT 21 23 44 0.048 0.000 0.023 104364 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 104394 CC 23 21 44 CT 0 2 2 TT 0 0 0 0.000 0.048 0.023 104439 AA 10 0 10 AG 10 6 16 GG 3 17 20 0.040 0.517 3.349 104829 AA 3 13 16 AG 11 8 19 GG 10 1 11 0.000 0.027 1.238 104953 CC 22 17 39 CT 0 2 2 TT 0 0 0 0.000 0.059 0.026 104960 AA 10 17 27 AG 8 2 10 GG 4 0 4 1.010 0.059 3.405 106110 GG 0 0 0 GT 1 0 1 TT 22 22 44 0.011 0.000 0.006 107764 AA 0 0 0 AC 3 0 3 CC 17 20 37 0.131 0.000 0.061 108192 AA 0 0 0 AG 1 0 1 GG 18 19 37 0.014 0.000 0.007 108582 CC 0 0 0 CT 2 0 2 TT 20 23 43 0.050 0.000 0.023 108717 -- 0 0 0 +- 0 3 3 ++ 22 20 42 0.000 0.112 0.054 109064 GG 22 23 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 109162 AA 0 0 0 AG 2 0 2 GG 21 23 44 0.048 0.000 0.023 109477 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 109600 AA 14 20 34 AG 7 3 10 GG 3 0 3 1.642 0.112 2.863 109653 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 114497 CC 0 0 0 CT 10 3 13 TT 14 19 33 1.662 0.118 1.246 114613 AA 0 0 0 AG 10 3 13 GG 14 19 33 1.662 0.118 1.246 114615 CC 0 0 0 CG 0 1 1 GG 24 21 45 0.000 0.012 0.006 114636 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 115173 AA 8 20 28 AG 10 3 13 GG 5 0 5 0.306 0.112 2.792 115762 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 115996 AA 0 0 0 AT 2 0 2 TT 21 22 43 0.048 0.000 0.023 116123 CC 0 0 0 CT 3 0 3 TT 19 22 41 0.118 0.000 0.055 116163 CC 20 19 39 CT 2 3 5 TT 0 0 0 0.050 0.118 0.160 116305 CC 19 20 39 CT 1 1 2 TT 0 0 0 0.013 0.012 0.026 116312 CC 17 22 39 CT 3 0 3 TT 0 0 0 0.131 0.000 0.058 116313 AA 18 22 40 AG 2 0 2 GG 1 0 1 4.203 0.000 9.727 116349 CC 15 12 27 CT 1 0 1 TT 0 0 0 0.017 0.000 0.009 119133 AA 22 22 44 AG 2 0 2 GG 0 0 0 0.045 0.000 0.023 119231 CC 0 0 0 CT 0 5 5 TT 24 18 42 0.000 0.342 0.148 119324 AA 0 0 0 AC 2 0 2 CC 22 23 45 0.045 0.000 0.022 119403 AA 5 1 6 AG 11 7 18 GG 8 15 23 0.114 0.025 0.663 119554 CC 0 0 0 CT 2 0 2 TT 22 21 43 0.045 0.000 0.023 119568 -- 0 0 0 +- 3 0 3 ++ 21 21 42 0.107 0.000 0.054 119796 -- 16 21 37 +- 8 0 8 ++ 0 0 0 0.960 0.000 0.428 120288 CC 1 0 1 CT 3 5 8 TT 20 18 38 2.617 0.342 0.516 120353 CC 24 18 42 CT 0 5 5 TT 0 0 0 0.000 0.342 0.148 120366 CC 15 19 34 CG 9 4 13 GG 0 0 0 1.278 0.209 1.211 120376 CC 11 3 14 CT 10 9 19 TT 3 11 14 0.094 0.277 1.723 121401 AA 0 0 0 AG 2 3 5 GG 22 19 41 0.045 0.118 0.152 121995 AA 0 0 0 AG 4 0 4 GG 20 23 43 0.198 0.000 0.093 122264 -- 14 19 33 +- 10 4 14 ++ 0 0 0 1.662 0.209 1.439 122451 AA 23 21 44 AG 0 2 2 GG 0 0 0 0.000 0.048 0.023 122695 AA 24 16 40 AG 0 7 7 GG 0 0 0 0.000 0.741 0.304 122968 AA 1 0 1 AG 3 0 3 GG 20 23 43 2.617 0.000 6.306 123019 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 123021 AA 18 23 41 AG 4 0 4 GG 2 0 2 3.840 0.000 9.666 123261 CC 21 22 43 CT 2 0 2 TT 0 0 0 0.048 0.000 0.023 123333 CC 0 0 0 CT 1 0 1 TT 22 22 44 0.011 0.000 0.006 123487 CC 0 0 0 CT 0 1 1 TT 22 22 44 0.000 0.011 0.006 123575 GG 2 0 2 GT 0 0 0 TT 20 23 43 22.000 0.000 45.000 123614 GG 22 20 42 GT 0 2 2 TT 0 0 0 0.000 0.050 0.024 123663 CC 1 0 1 CT 4 0 4 TT 17 23 40 1.144 0.000 3.673 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 002094: atatagaagcatagtgc 002460: aa 004468: t 011218: ct 011509: atta 027505: CT 034866: ctttt 046664: t 058029: GAGT 058096: CAAA 108717: ga 119568: taga 119796: g 122264: C