************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 opn4x.phase.inp opn4x.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST opn4x.phase.out_freqs : haplotype frequency estimates opn4x.phase.out_pairs : most likely haplotype pairs for each individual opn4x.phase.out_recom : estimates of recombination parameters opn4x.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 70 Positions of loci: 316 355 602 768 855 868 975 1187 1250 1359 1434 1558 1621 1755 1798 2112 2113 2301 2561 2588 3019 3077 3078 3154 3162 3188 3441 3884 3970 4141 4155 5061 5267 5644 6048 6078 6226 6555 6634 6809 6833 7184 8064 8584 8912 9175 9540 9659 9694 9850 9963 10435 10442 10720 11066 11317 11805 12051 12353 13100 13326 13587 13604 13895 14164 14587 14688 14754 15483 15621 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file opn4x.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 GCAAATAITITDIGTCGGACCGGCGTTCCAGGCCTCTTCGCGGTGCCTCGGGATCDGCG 1 GGCCIACCGT 1.000000 2 GCAAATAITITIIGTCGGACCGGCGTCCCAGGCCGCTTCACGGCGACTCGAAATTDGCG 3 AGTCICCCGT 2.000000 3 GCAAATAITITIIGTCGGACCGGCGTCCCAGGCCTCTTCGCGGTGCCTCGGGATCDGCG 1 GGCCIACCGT 1.000000 4 GCAAATAITITIIGTCGGACCGGCGTTCCAGGCCTCTTCGCGGTGCCTCGGGATCDGCG 1 GGCCIACCGT 4.000000 5 GCAAATAITITIIGTCGGACCGGCGTTCCAGGCCTCTTCGCGGTGCCTCGGGATCDGCG 2 GGCCICCCAT 1.000000 6 GCAAATAITITIIGTCGGACCGGCGTTCCAGGCCTCTTCGCGGTGCCTCGGGATCDGCG 2 GGCCIACCGT 1.000000 7 GCAAATAITITIIGTCGGATCGGCGTCCCAGGCCGCTTCGCGGCGACTCGGAATTDGCG 3 AGCCICCCGT 1.000000 8 GCAAATAITITIIGTCGGATCGGCGTCCCAGGCCGCTTCGCGGTGCCTCGGGATCDGCG 2 GGCCICCCGT 1.000000 9 GCAAATAITITIIGTCGGATCGGCGTCCCAGGCCGCCTCACGGCGACTCGAAATTDGCG 3 AGTCICCCGT 1.000000 10 GCAAATAITITIIGTTGGACCGGCGTCCCAGGCCGCTTCGCGGCGACTCGAAATTDGCG 3 AGTCICCCGT 1.000000 11 GCAAATAITITIDGTTGAACCGGCGTCCCAGACCGCTTCGAGGCGCTTCAAGATCDGCA 1 GGCCICTCGT 7.000000 12 GCAAATAITDTIIGTCGGACCGGCGTTCCAGGCCTCTTCGCGGTGCCTCGGGATCDGCG 1 GGCCIACCGT 1.000000 13 GCAAATAITDADDGTCGGGCTGGCGTCACAGGCCGCTTCGCGGCGCCTCGGGATCDGCG 2 GGCCICCCGT 1.000000 14 GCAAATCICITDIGCCGGACCGGCGTCCCAGGCCGTTCCGCAGCGCCTCGGGACCDGTG 2 GACCDCCCGT 5.000000 15 GCAAATCICITDIGCCGGACCGGCGTCCCAGGCCGTTCCGCAGCGCCTCGGGACCDTTG 2 GACCDCCCGT 4.000000 16 GCAAATCICITDIGCCGGACCGGCGTCCCAGGCCGTTCCGCAGCGCCTCGGGATCDGCG 2 GGCCDCCCGT 1.000000 17 GCAAATCICITDIGCCGGACCGGCGTCCCAGGCCGTTCCGCAGCGCCTCGGGATCDGTG 2 GACCDCCCGT 6.000000 18 GCAAATCICITDIGCCGGACCGGCGTCCCAGGCCGTTCCGCAGCGCTTCAAGATCDGCA 1 GGCCICTCGT 1.000000 19 GCAAATCICITDIGTCGGACCGGCGTCCCAGGCCGTTCCGCAGCGCCTCGGGACCDTTG 2 GACCDCCCGT 1.000000 20 GCAAATCICITDIGTCGGACCAACGTCCCAGGCCGCTTTGCGGCGACTCGGGATCIGCG 2 GGCCICCCGT 2.000000 21 GCAAATCICDTDIGTCGGACCAACGTCCCAGGCCGCTTTGCGGCGACTCGGGATCIGCG 2 GGCCICCCGT 1.000000 22 GCAAATCITITIIGTCGGATCGGCGTCCCAGGCCGCTTCGCGGCGACTCGAAATTDGCG 3 AGCCICCCGT 1.000000 23 GCAAATCITITIIGTCGGATCGGCGTCCCAGGCCGCCTCACGGCGACTCGAAATTDGCG 3 AGTCICCCGT 1.000000 24 GCAAATCITDADDGTCGGGCTGGCGCCACAGGCTGCTTCGCGACACCCCGGGCTCDGCG 2 GGCCICCCGT 7.000000 25 GCCACCCITITIIATCGGACCGGAGTCCCAAGCCGCCTCGCGGCGCCCCGGGATCDGCG 2 GGCCICCCGT 2.000000 26 GCCACCCITITIIATCGGACCGGAGTCCCAAGCCGCCTCGCGGCGCCCCGGGATCDGCG 2 GGCCICCCGA 2.000000 27 GCCACCCITITIIATCGGACCGGAGTCCCAAGCCGCCTCGCGGCGCCCCGGGATCIGCG 2 GGCCICCCGT 1.000000 28 GCCACCCITIAIIATCGGACCGGAGTCCCAAGCCGCCTCGCGGCGCCCCGGGATCDGCG 2 GGCCICCCGA 13.000000 29 GTAAATCICITDIGTCGGACCAACGTCCCAGGCCGCTTTGCGGCGCCTCGGGATCDGCG 2 GGCCICCCGT 1.000000 30 GTAAATCICITDIGTCGGACCAACGTCCCAGGCCGCTTTGCGGCGACTCGAGATCDGCG 2 GGCCICCCGT 1.000000 31 GTAAATCICITDIGTCGGACCAACGTCCTAGGCCGCTTTGCGGCGACTCGGGATCDGCG 2 GACCDCCCGT 3.000000 32 GTAAATCICITDIGTCGGACCAACGTCCTAGGCCGCTTTGCGGCGACTCGGGATCDGCG 2 GGCCICCCGT 1.000000 33 GTAAATCICITIIGTCGGACCAACGTCCTAGGCCGCTTTGCGGCGACTCGGGATCDGCG 2 GACCDCCCGT 1.000000 34 ACACATAITITIIGTCGGATCGGCGTCCCAGGCCGCCTCACGGCGACTCGAAATTDGCG 1 GGCCIACCGT 1.000000 35 ACACATADTITIIGTCAGACCGGCATCCCTGGTCGCTTCGCGGCGCCTAGGGATCDGCG 2 GGCTICCCAT 4.000000 36 ACACATADTITIIGTCAGACCGGCATCCCTGGTCGCTTCGCGGCGCCTAGGGATCDGCG 2 GGCTICCTAT 8.000000 37 ACACATADTITIIGTCAGACCGGCATCCCTGGTCGCTTCGCGGCGCCTAGGGATCIGCG 2 GGCTICCTAT 2.000000 38 ACACATCDTITIIGTCAGACCGGCATCCCTGGTCGCTTCGCGGCGCCTAGGGATCDGCG 2 GGCTICCCAT 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY DY01: (5,15) DY02: (20,21) DY03: (29,38) DY04: (22,30) DY05: (19,25) DY06: (31,33) DY07: (23,31) DY08: (1,4) DY09: (14,15) DY10: (12,17) DY11: (16,24) DY12: (3,28) DY13: (6,7) DY14: (9,15) DY15: (27,31) DY16: (14,34) DY17: (2,26) DY18: (4,35) DY19: (2,17) DY20: (4,20) DY21: (10,8) DY22: (25,32) DY23: (4,15) DY24: (24,28) E101: (17,28) E102: (11,24) E103: (11,17) E104: (11,17) E105: (14,28) E106: (28,28) E107: (28,28) E108: (17,18) E109: (28,36) E110: (28,36) E111: (36,36) E112: (13,35) E113: (24,36) E114: (24,37) E115: (14,35) E116: (24,36) E117: (11,11) E118: (24,35) E119: (11,36) E120: (14,37) E121: (11,26) E122: (28,36) E123: (28,28) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 DY01 G C A A A T A I T I T [I] I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 2 G G C C I C C C (A) T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D T T G 2 G A C C D C C C (G) T 0 DY02 G C A A A T C I C I T D I G T C G G A C C A A C G T C C C A G G C C G C T T T G C G G C G A C T C G G G A T C I G C G 2 G G C C I C C C G T G C A A A T C I C D T D I G T C G G A C C A A C G T C C C A G G C C G C T T T G C G G C G A C T C G G G A T C I G C G 2 G G C C I C C C G T 0 DY03 G T A A A T C I C I T D I G T C G G A C C A A C G T C C C A G G C C G C T T T G C G G C G C C T C G G G A T C D G C G 2 G G C C I C C C G T A C A C A T C D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C C A T 0 DY04 G C A A A T C I T I T I [I] G T C G G A T C G G C G T C C C A G G C C G C T T C G C G G C G A C T C G A A A T T D G C G 3 A G C C I C C C G T G T A A A T C I C I T D I G T C G G A C C A A C G T C C C A G G C C G C T T T G C G G C G A C T C G A G A T C D G C G 2 G G C C I C C C G T 0 DY05 G C A A A T C I C I T D I G T C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D T T G 2 G A C C D C C C G T G C C A C C C I T I T I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G T 0 DY06 G T A A A T C I C I T D I G T C G G A C C A A C G T C C T A G G C C G C T T T G C G G C G A C T C G G G A T C D G C G 2 G A C C D C C C G T G T A A A T C I C I T I I G T C G G A C C A A C G T C C T A G G C C G C T T T G C G G C G A C T C G G G A T C D G C G 2 G A C C D C C C G T 0 DY07 G C A A A T C I T I T (I) I G T C G G A T C G G C G T C C C A G G C C G C C T C A C G G C G A C T C G A A A T T D G C G 3 A G T C I C C C G T G T A A A T C I C I T (D) I G T C G G A C C A A C G T C C T A G G C C G C T T T G C G G C G A C T C G G G A T C D G C G 2 G A C C D C C C G T 0 DY08 G C A A A T A I T I T D I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 1 G G C C I A C C G T G C A A A T A I T I T I I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 1 G G C C I A C C G T 0 DY09 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D G T G 2 G A C C D C C C G T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D T T G 2 G A C C D C C C G T 0 DY10 G C A A A T A I T D T [I] I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 1 G G C C I A C C G T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A T C D G T G 2 G A C C D C C C G T 0 DY11 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A T C D G C G 2 G G C C D C C C G T G C A A A T C I T D A D D G T C G G G C T G G C G C C A C A G G C T G C T T C G C G A C A C C C C G G G C T C D G C G 2 G G C C I C C C G T 0 DY12 G C A A A T A I T I T [I] I G T C G G A C C G G C G T C C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 1 G G C C I A C C G T G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 DY13 G C A A A T A I T I T [I] I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 2 G G C C I A C C G T G C A A A T A I T I T [I] [I] G T C G G A T C G G C G T C C C A G G C C G C T T C G C G G C G A C T C G G A A T T D G C G 3 A G C C I C C C G T 0 DY14 G C A A A T (A) I T I T [I] I G T C G G A T C G G C G T C C C A G G C C G C C T C A C G G C G A C T C G A A A T T D G C G 3 A G T C I C C C G T G C A A A T (C) I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D T T G 2 G A C C D C C C G T 0 DY15 G C C A C C C I T I T I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C I G C G 2 G G C C I C C C G T G T A A A T C I C I T [D] I G T C G G A C C A A C G T C C T A G G C C G C T T T G C G G C G A C T C G G G A T C D G C G 2 G A C C D C C C G T 0 DY16 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D G T G 2 G A C C D C C C G T A C A C A T A I T I T [I] I G T C G G A T C G G C G T C C C A G G C C G C C T C A C G G C G A C T C G A A A T T D G C G 1 G G C C I A C C G T 0 DY17 G C A A A T A I T I T I I G T C G G A C C G G C G T C C C A G G C C G C T T C A C G G C G A C T C G A A A T T D G C G 3 A G T C I C C C G T G C C A C C C I T I T I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 DY18 G C A A A T A I T I T [I] I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 1 G G C C I A C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C C A T 0 DY19 G C A A A T A I T I T I I G T C G G A C C G G C G T C C C A G G C C G C T T C A C G G C G A C T C G A A A T T D G C G 3 A G T C I C C C G T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A T C D G T G 2 G A C C D C C C G T 0 DY20 G C A A A T A I T I T I I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 1 G G C C I A C C G T G C A A A T C I C I T D I G T C G G A C C A A C G T C C C A G G C C G C T T T G C G G C G A C T C G G G A T C I G C G 2 G G C C I C C C G T 0 DY21 G C A A A T A I T I T I I G T (T) G G A (C) C G G C G T C C C A G G C C G C T T C G C G G (C) G A C T C G A A A T T D G C G 3 A G T C I C C C G T G C A A A T A I T I T I [I] G T (C) G G A (T) C G G C G T C C C A G G C C G C T T C G C G G (T) G C C T C G G G A T C D G C G 2 G G C C I C C C G T 0 DY22 G C C A C C C I T I T I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G T G T A A A T C I C I T [D] I G T C G G A C C A A C G T C C T A G G C C G C T T T G C G G C G A C T C G G G A T C D G C G 2 G G C C I C C C G T 0 DY23 G C A A A T A I T I T [I] I G T C G G A C C G G C G T T C C A G G C C T C T T C G C G G T G C C T C G G G A T C D G C G 1 G G C C I A C C G T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D T T G 2 G A C C D C C C G T 0 DY24 G C A A A T C I T D A D D G T C G G G C T G G C G C C A C A G G C T G C T T C G C G A C A C C C C G G G C T C D G C G 2 G G C C I C C C G T G C C A C C C I T I [A] I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 E101 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A T C D G T G 2 G A C C D C C C G T G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 E102 G C A A A T A I T I T I D G T T G A A C C G G C G T C C C A G A C C G C T T C G A G G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T G C A A A T C I T D A D D G T C G G G C T G G C G C C A C A G G C T G C T T C G C G A C A C C C C G G G C T C D G C G 2 G G C C I C C C G T 0 E103 G C A A A T A I T I T I D G T T G A A C C G G C G T C C C A G A C C G C T T C G A G G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A T C D G T G 2 G A C C D C C C G T 0 E104 G C A A A T A I T I T I D G T T G A A C C G G C G T C C C A G A C C G C T T C G A G G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A T C D G T G 2 G A C C D C C C G T 0 E105 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D G T G 2 G A C C D C C C G T G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 E106 G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 E107 G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 E108 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A [T] C D G T G 2 G A C C D C C C G T G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T 0 E109 G C C A C C C I T I [A] I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T 0 E110 G C C A C C C I T I [A] I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T 0 E111 A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T 0 E112 G C A A A T A I T [D] [A] [D] [D] G T C G G G C T G G C G T C A C A G G C C G C T T C G C G G C G C C T C G G G A T C D G C G 2 G G C C I C C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C C A T 0 E113 G C A A A T C I T D A D D G T C G G G C T G G C G C C A C A G G C T G C T T C G C G A C A C C C C G G G C T C D G C G 2 G G C C I C C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T 0 E114 G C A A A T C I T D A D D G T C G G G C T G G C G C C A C A G G C T G C T T C G C G A C A C C C C G G G C T C D G C G 2 G G C C I C C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C I G C G 2 G G C T I C C T A T 0 E115 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D G T G 2 G A C C D C C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C C A T 0 E116 G C A A A T C I T D A D D G T C G G G C T G G C G C C A C A G G C T G C T T C G C G A C A C C C C G G G C T C D G C G 2 G G C C I C C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T 0 E117 G C A A A T A I T I T I D G T T G A A C C G G C G T C C C A G A C C G C T T C G A G G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T G C A A A T A I T I T I D G T T G A A C C G G C G T C C C A G A C C G C T T C G A G G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T 0 E118 G C A A A T C I T D A D D G T C G G G C T G G C G C C A C A G G C T G C T T C G C G A C A C C C C G G G C T C D G C G 2 G G C C I C C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C C A T 0 E119 G C A A A T A I T I T I D G T T G A A C C G G C G T C C C A G A C C G C T T C G A G G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T 0 E120 G C A A A T C I C I T D I G C C G G A C C G G C G T C C C A G G C C G T T C C G C A G C G C C T C G G G A C C D G T G 2 G A C C D C C C G T A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C I G C G 2 G G C T I C C T A T 0 E121 G C A A A T A I T I T I D G T T G A A C C G G C G T C C C A G A C C G C T T C G A G G C G C T T C A A G A T C D G C A 1 G G C C I C T C G T G C C A C C C I T I T I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A 0 E122 G C C A C C C I T I [A] I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A A C A C A T A D T I T I I G T C A G A C C G G C A T C C C T G G T C G C T T C G C G G C G C C T A G G G A T C D G C G 2 G G C T I C C T A T 0 E123 G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A G C C A C C C I T I A I I A T C G G A C C G G A G T C C C A A G C C G C C T C G C G G C G C C C C G G G A T C D G C G 2 G G C C I C C C G A END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 DY01 = = = = = = A = T ? ? ? ? = T = = = = = = = = = = = T = = = = = = = T C = T = = = G = T = = = = = = = = = T = = G C = = = G = = ? = = = (A) = = = = = = = C = C ? ? ? ? = C = = = = = = = = = = = C = = = = = = = G T = C = = = A = C = = = = = = = = = C = = T T = = = A = = ? = = = (G) = 0 DY02 = = = = = = = = = I ? = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = D ? = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = ? = = = = = = = = = = = = = = = = = = = 0 DY03 G T = A = = = I ? ? ? D = ? ? = G = = = = A A = G = = = = A = = C = = = = = T = = = = = = = = = C = = = = = = = = = = = = = = C = = = = G = A C = C = = = D ? ? ? I = ? ? = A = = = = G G = A = = = = T = = T = = = = = C = = = = = = = = = A = = = = = = = = = = = = = = T = = = = A = 0 DY04 = C = = = = = = T = = ? ? ? = = = = = T = G G = = = = = = = = = = = = = = = C = = = = = = = = = = = = A = = T = = = = 3 A = = = = = = = = = = T = = = = = = C = = ? ? ? = = = = = C = A A = = = = = = = = = = = = = = = T = = = = = = = = = = = = G = = C = = = = 2 G = = = = = = = = = 0 DY05 = = A = A T = = C = = ? = G = = = = = = = = = C = = = = = = G = = = = T T C = = = A = = = = = T = = = = = C = = T T = = = A = = D = = = = = = = C = C C = = T = = ? = A = = = = = = = = = A = = = = = = A = = = = C C T = = = G = = = = = C = = = = = T = = G C = = = G = = I = = = = = 0 DY06 = = = = = = = = = = ? D = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? I = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY07 = C = = = = = = T = = (I) = = = = = = = T = G G = = = = = C = = = = = = = C = C A = = = = = = = = = = A A = = T = = = = 3 A G T = I = = = = = = T = = = = = = C = = (D) = = = = = = = C = A A = = = = = T = = = = = = = T = T G = = = = = = = = = = G G = = C = = = = 2 G A C = D = = = = = 0 DY08 = = = = = = ? = = = = D = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = I = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY09 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = ? = = = = = 0 DY10 = = = = = = A = T D ? ? ? = T = = = = = = = = = = = T = = = = = = = T C = T = = = G = T = = = = = = = = = = = = = C = 1 = G = = I A = = = = = = = = = = C = C I ? ? ? = C = = = = = = = = = = = C = = = = = = = G T = C = = = A = C = = = = = = = = = = = = = T = 2 = A = = D C = = = = 0 DY11 = = = = = = = = C I ? ? ? = C = = = A = C = = = = T = C ? ? ? = = C = T = C = = = A G = G = = T = = = = A = = = = = = = = = = = D = = = = = = = = = = = = = T D ? ? ? = T = = = G = T = = = = C = A ? ? ? = = T = C = T = = = G A = A = = C = = = = C = = = = = = = = = = = I = = = = = 0 DY12 = = A = A T A = = = T ? ? G = = = = ? ? = = = C = = = = = = G = = = T = T = = = = = = T = = = T = = = = = = = = = = = 1 = = = = = A = = = T = = C = C C C = = = A ? ? A = = = = ? ? = = = A = = = = = = A = = = G = C = = = = = = C = = = C = = = = = = = = = = = 2 = = = = = C = = = A 0 DY13 = = = = = = = = = = = ? ? = = = = = = C = = = = = = T = = = = = = = T = = = = = = = = T = C = = = = = G = ? C = = = = 2 G = = = = A = = = = = = = = = = = = = = = ? ? = = = = = = T = = = = = = C = = = = = = = G = = = = = = = = C = A = = = = = A = ? T = = = = 3 A = = = = C = = = = 0 DY14 = = = = = = (A) = T = = ? ? = T = = = = T = = = = = = = = = = = = = = = C C T = A = G = = = A ? ? ? = A A = T T ? G C = 3 A G T = I = = = = = = = = = = = (C) = C = = ? ? = C = = = = C = = = = = = = = = = = = = = = T T C = G = A = = = C ? ? ? = G G = C C ? T T = 2 G A C = D = = = = = 0 DY15 = C C = C C = = T = = ? ? A = = = = = = = G G A = = = = C = A = = = = = C = C = = = = = = C = C = = = = = = = I = = = = = G = = I = = = = = = T A = A T = = C = = ? ? G = = = = = = = A A C = = = = T = G = = = = = T = T = = = = = = A = T = = = = = = = D = = = = = A = = D = = = = = 0 DY16 G = = A = = C = C = = ? ? = C = = = = C = = = = = = = = ? ? ? = = = = T T C = G = A = = = C = = = = G G = C C = = T = 2 = A = = D C = = = = A = = C = = A = T = = ? ? = T = = = = T = = = = = = = = ? ? ? = = = = C C T = A = G = = = A = = = = A A = T T = = C = 1 = G = = I A = = = = 0 DY17 = = A = A T A = = = = = = G = = = = = = = = = C = = = = = = G = = = = = T = = A = = = = = A = T = = A A = = T = = = = 3 A = T = = = = = = T = = C = C C C = = = = = = A = = = = = = = = = A = = = = = = A = = = = = C = = G = = = = = C = C = = G G = = C = = = = 2 G = C = = = = = = A 0 DY18 G = = A = = = I ? ? ? ? ? = = = G = = = = = = = G = T = = A = = C = T = = = = = = = = T = = = = C = = = = = = = = = = 1 = = = C = A = = G = A = = C = = = D ? ? ? ? ? = = = A = = = = = = = A = C = = T = = T = G = = = = = = = = C = = = = A = = = = = = = = = = 2 = = = T = C = = A = 0 DY19 = = = = = = A = T = = I = = T = = = = = = = = = = = = = = = = = = = = C = T = A = G = = = A = = = = A A = = T = = C = 3 A G T = I = = = = = = = = = = = C = C = = D = = C = = = = = = = = = = = = = = = = = = = = T = C = G = A = = = C = = = = G G = = C = = T = 2 G A C = D = = = = = 0 DY20 = = = = = = A = T = = I = = = = = = = = = G G = = = T = = = = = = = T = = = C = = = = T = C = = = = = = = = = D = = = 1 = = = = = A = = = = = = = = = = C = C = = D = = = = = = = = = A A = = = C = = = = = = = G = = = T = = = = C = A = = = = = = = = = I = = = 2 = = = = = C = = = = 0 DY21 = = = = = = = = = = = ? ? = = (T) = = = (C) = = = = = = = = = = = = = = = = = = = = = = = (C) = A = = = = A A = = T = = = = 3 A = T = = = = = = = = = = = = = = = = = = ? ? = = (C) = = = (T) = = = = = = = = = = = = = = = = = = = = = = = (T) = C = = = = G G = = C = = = = 2 G = C = = = = = = = 0 DY22 = C C = C C = = T = = ? ? A = = = = = = = G G A = = = = C = A = = = = = C = C = = = = = = C = C = = = = = = = = = = = = = = = = = = = = = = = T A = A T = = C = = ? ? G = = = = = = = A A C = = = = T = G = = = = = T = T = = = = = = A = T = = = = = = = = = = = = = = = = = = = = = = 0 DY23 = = = = = = A = T = = ? ? = T = = = = = = = = = = = T = = = = = = = T C = T = = = G = T = = = = = = = = = T = = G C = 1 = G = = I A = = = = = = = = = = C = C = = ? ? = C = = = = = = = = = = = C = = = = = = = G T = C = = = A = C = = = = = = = = = C = = T T = 2 = A = = D C = = = = 0 DY24 = = A = A T = = = D ? ? ? G = = = = G = T = = C = C = A = = G = = T = = T = = = = = A = A = = = = = = = C = = = = = = = = = = = = = = = = T = = C = C C = = = I ? ? ? A = = = = A = C = = A = T = C = = A = = C = = C = = = = = G = G = = = = = = = A = = = = = = = = = = = = = = = = A 0 E101 = = A = A T = = C = T D = G C = = = = = = = = C = = = = = = G = = = = T T C = = = A = = = = = T = = = = = = = = = T = = = A = = D = = = = T = = C = C C = = T = A I = A T = = = = = = = = A = = = = = = A = = = = C C T = = = G = = = = = C = = = = = = = = = C = = = G = = I = = = = A 0 E102 = = = = = = A = = I ? ? ? = = T = A A = C = = = = T = C = = = A = C = = = = = = A = G = G = T T = A A = A = = = = = A 1 = = = = = = T = = = = = = = = = C = = D ? ? ? = = C = G G = T = = = = C = A = = = G = T = = = = = = C = A = A = C C = G G = C = = = = = G 2 = = = = = = C = = = 0 E103 = = = = = = A = T = = ? D = T T = A = = = = = = = = = = = = = A = = = C = T = = A G = = = = T = = A A = = = = = = C A 1 = G = = I = T = = = = = = = = = C = C = = ? I = C C = G = = = = = = = = = = = = = G = = = T = C = = C A = = = = C = = G G = = = = = = T G 2 = A = = D = C = = = 0 E104 = = = = = = A = T = = ? D = T T = A = = = = = = = = = = = = = A = = = C = T = = A G = = = = T = = A A = = = = = = C A 1 = G = = I = T = = = = = = = = = C = C = = ? I = C C = G = = = = = = = = = = = = = G = = = T = C = = C A = = = = C = = G G = = = = = = T G 2 = A = = D = C = = = 0 E105 = = A = A T = = C = T D = G C = = = = = = = = C = = = = = = G = = = = T T C = = = A = = = = = T = = = = = C = = = T = = = A = = D = = = = T = = C = C C = = T = A I = A T = = = = = = = = A = = = = = = A = = = = C C T = = = G = = = = = C = = = = = T = = = C = = = G = = I = = = = A 0 E106 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E107 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E108 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = G G = = ? = = = T G 2 = A = = D ? C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = A A = = ? = = = C A 1 = G = = I ? T = = = 0 E109 G = C A C C C I ? ? ? ? ? A = = G = = = = = = A G = = = = A A = C = = = C = = = = = = = = = = C C = = = = = = = = = = = = = = C = = = C G A A = A C A T A D ? ? ? ? ? G = = A = = = = = = C A = = = = T G = T = = = T = = = = = = = = = = T A = = = = = = = = = = = = = = T = = = T A T 0 E110 G = C A C C C ? ? ? ? ? ? A = = G = = = = = = A G = = = ? ? ? = C = = = C = = = = = = = = = = C C = = = = = = = = = = = = = = C = = = C G A A = A C A T A ? ? ? ? ? ? G = = A = = = = = = C A = = = ? ? ? = T = = = T = = = = = = = = = = T A = = = = = = = = = = = = = = T = = = T A T 0 E111 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E112 G = = A = = = I ? ? ? ? ? = = = G = G = T = = = G = = A = A = = C = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = C = = = = G = A = = C = = = D ? ? ? ? ? = = = A = A = C = = = A = = C = T = = T = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = T = = = = A = 0 E113 G = ? ? ? ? C I ? ? ? ? ? = = = G = G = T = = = G C = A = ? ? = C T = = = = = = = = A = A = = C C = = = C = = = = = = = = = = C = = = C G = A = ? ? ? ? A D ? ? ? ? ? = = = A = A = C = = = A T = C = ? ? = T C = = = = = = = = G = G = = T A = = = A = = = = = = = = = = T = = = T A = 0 E114 G = = A = = C I ? ? ? ? ? = = = G = G = T = = = G C = A = A = = C T = = = = = = = = A = A = = C C = = = C = = D = = = = = = = C = = = C G = A = = C = = A D ? ? ? ? ? = = = A = A = C = = = A T = C = T = = T C = = = = = = = = G = G = = T A = = = A = = I = = = = = = = T = = = T A = 0 E115 G = = A = = C I ? ? ? ? ? = C = G = = = = = = = G = = = = A = = C = = T = C = = = A = = = = = = C = = = = C = ? = T = = = A = C D = = = G = A = = C = = A D ? ? ? ? ? = T = A = = = = = = = A = = = = T = = T = = C = T = = = G = = = = = = A = = = = T = ? = C = = = G = T I = = = A = 0 E116 G = = A = = C I ? ? ? ? ? = = = G = G = T = = = G C = A = A = = C T = = = = = = = = A = A = = C C = = = C = = = = = = = = = = C = = = C G = A = = C = = A D ? ? ? ? ? = = = A = A = C = = = A T = C = T = = T C = = = = = = = = G = G = = T A = = = A = = = = = = = = = = T = = = T A = 0 E117 = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E118 G = = A = = C I ? ? ? ? ? = = = G = G = T = = = G C = A = A = = C T = = = = = = = = A = A = = C C = = = C = = = = = = = = = = C = = = = G = A = = C = = A D ? ? ? ? ? = = = A = A = C = = = A T = C = T = = T C = = = = = = = = G = G = = T A = = = A = = = = = = = = = = T = = = = A = 0 E119 G = = A = = = I ? ? ? ? ? = = T G A = = = = = = G = = = ? ? ? A C = = = = = = = A = = = = = T = C A A = = = = = = = A 1 = = = C = = T C G = A = = C = = = D ? ? ? ? ? = = C A G = = = = = = A = = = ? ? ? G T = = = = = = = C = = = = = C = A G G = = = = = = = G 2 = = = T = = C T A = 0 E120 G = = A = = C I ? ? ? ? ? = C = G = = = = = = = G = = = = A = = C = = T = C = = = A = = = = = = C = = = = C = D = T = = = A = C D = = C G = A = = C = = A D ? ? ? ? ? = T = A = = = = = = = A = = = = T = = T = = C = T = = = G = = = = = = A = = = = T = I = C = = = G = T I = = T A = 0 E121 = = A = A T A = = = = ? ? G = T = A = = = = = C = = = = = = G A = = = = T = = = A = = = = = T T = A A = = = = = = = A 1 = = = = = = T = = T = = C = C C C = = = = ? ? A = C = G = = = = = A = = = = = = A G = = = = C = = = C = = = = = C C = G G = = = = = = = G 2 = = = = = = C = = A 0 E122 G = C A C C C I ? ? ? ? ? A = = G = = = = = = A G = = = = A A = C = = = C = = = = = = = = = = C C = = = = ? = = = = = = = = = C = = = C G A A = A C A T A D ? ? ? ? ? G = = A = = = = = = C A = = = = T G = T = = = T = = = = = = = = = = T A = = = = ? = = = = = = = = = T = = = T A T 0 E123 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = = 1.00 = 1.00 ? ? ? ? = 1.00 = = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 = = = = = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = = ? = = = 0.76 = = = = = = = = = = 1.00 ? = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = ? = = = = = = = = = = = = = = = = = = = 1.00 0.90 = 1.00 = = = 1.00 ? ? ? 1.00 = ? ? = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 = = 1.00 = = = = = 1.00 = = = = = = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = 0.94 = = = = = = 1.00 = = ? ? ? = = = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 1.00 = = 1.00 = = = = 1.00 1.00 = = = = = = = = = = = 1.00 = 1.00 1.00 = = 1.00 = = ? = 1.00 = = = = = = = = = 1.00 = = = = = = 1.00 = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = 1.00 = = = = = 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = ? 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = 1.00 = = 0.76 = = = = = = = 1.00 = 1.00 1.00 = = = = = 1.00 = = = = = = = 1.00 = 1.00 1.00 = = = = = = = = = = 1.00 1.00 = = 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = ? = = = = 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = ? = = = = = = = = = = = 1.00 = 1.00 1.00 ? ? ? = 1.00 = = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 ? ? ? = 1.00 = = = 1.00 = 1.00 = = = = 1.00 = 1.00 ? ? ? = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 = = = = = = = = = = = 1.00 = = = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 ? ? 1.00 = = = = ? ? = = = 1.00 = = = = = = 1.00 = = = 1.00 = 1.00 = = = = = = 1.00 = = = 1.00 = = = = = = = = = = = 1.00 = = = = = 1.00 = = = 1.00 = = = = = = = = = = = ? ? = = = = = = 1.00 = = = = = = 1.00 = = = = = = = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = 1.00 = ? 1.00 = = = = 1.00 1.00 = = = = 1.00 = = = = = = = = = = 0.70 = 1.00 = = ? ? = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = = = 1.00 ? ? ? = 1.00 1.00 = 1.00 1.00 ? 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 = = ? ? 1.00 = = = = = = = 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = = = 1.00 = 1.00 = = = = = = 1.00 = 1.00 = = = = = = = 1.00 = = = = = 1.00 = = 1.00 = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = ? ? = 1.00 = = = = 1.00 = = = = = = = = ? ? ? = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = = = 1.00 = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 = 1.00 = 1.00 = = 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = = = 1.00 = = = = = = 1.00 = = = = = 1.00 = = 1.00 = = = = = 1.00 = 1.00 = = 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = = = = = 1.00 1.00 = = 1.00 = = = 1.00 ? ? ? ? ? = = = 1.00 = = = = = = = 1.00 = 1.00 = = 1.00 = = 1.00 = 1.00 = = = = = = = = 1.00 = = = = 1.00 = = = = = = = = = = 1.00 = = = 1.00 = 1.00 = = 1.00 = = = = = = = 1.00 = 1.00 = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 = 1.00 = = = 1.00 = = = = 1.00 1.00 = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = 1.00 = 1.00 = = 1.00 = = = = = = = = = 1.00 1.00 = = = 1.00 = = = = = = = 1.00 = = = 1.00 = = = = 1.00 = 1.00 = = = = = = = = = 1.00 = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = ? ? = = 0.67 = = = 0.83 = = = = = = = = = = = = = = = = = = = = = = = 0.86 = 1.00 = = = = 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = = = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 = = ? ? 1.00 = = = = = = = 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = = = 1.00 = 1.00 = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = = ? ? = 1.00 = = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 = = = = = = = = = 1.00 = = 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 = = = 1.00 ? ? ? 1.00 = = = = 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 = = 1.00 = = 1.00 = = 1.00 = = = = = 1.00 = 1.00 = = = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = = = 1.00 = = = = = = 1.00 = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = 1.00 = = = = = = = = = 1.00 = = = 1.00 = = 1.00 = = = = 1.00 = = = = = = 1.00 = = 1.00 ? ? ? = = 1.00 = 1.00 1.00 = 1.00 = = = = 1.00 = 1.00 = = = 1.00 = 1.00 = = = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = 1.00 1.00 = = = = = = 1.00 = = = = = = = = = 1.00 = 1.00 = = ? 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 = = 1.00 1.00 = = = = 1.00 = = 1.00 1.00 = = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 = = = = = = = = = 1.00 = 1.00 = = ? 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 = = 1.00 1.00 = = = = 1.00 = = 1.00 1.00 = = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = = = 1.00 = = = = = = 1.00 = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = 1.00 = = = = = 1.00 = = = 1.00 = = = 1.00 = = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = ? = = = 1.00 1.00 1.00 = 1.00 = = 1.00 ? 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? ? ? 1.00 = = 1.00 = = = = = = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 ? ? ? ? ? ? 1.00 = = 1.00 = = = = = = 1.00 1.00 = = = ? ? ? = 1.00 = = = 1.00 = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = = 1.00 ? ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = 1.00 = = 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = 1.00 = 1.00 = ? ? ? ? 1.00 1.00 ? ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 = 1.00 = ? ? = 1.00 1.00 = = = = = = = = 1.00 = 1.00 = = 1.00 1.00 = = = 1.00 = = = = = = = = = = 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 1.00 ? ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 = = = = = = = = 1.00 = 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 = = = = = = = 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 1.00 ? ? ? ? ? = 1.00 = 1.00 = = = = = = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = = 1.00 = = = = = = 1.00 = = = = 1.00 = ? = 1.00 = = = 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = = 1.00 = = 1.00 1.00 ? ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 = = = = = = = = 1.00 = 1.00 = = 1.00 1.00 = = = 1.00 = = = = = = = = = = 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = 1.00 1.00 ? ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 = = = = = = = = 1.00 = 1.00 = = 1.00 1.00 = = = 1.00 = = = = = = = = = = 1.00 = = = = 1.00 = 1.00 = = 1.00 = = = 1.00 ? ? ? ? ? = = 1.00 1.00 1.00 = = = = = = 1.00 = = = ? ? ? 1.00 1.00 = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = = = = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 = 1.00 = = 1.00 = = 1.00 1.00 ? ? ? ? ? = 1.00 = 1.00 = = = = = = = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = = 1.00 = = = = = = 1.00 = = = = 1.00 = 0.98 = 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = ? ? 1.00 = 1.00 = 1.00 = = = = = 1.00 = = = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = = = = = 1.00 1.00 = 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? ? ? 1.00 = = 1.00 = = = = = = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = = = = = 1.00 1.00 = = = = ? = = = = = = = = = 1.00 = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = END PHASEPROBS