Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000070 00000 ------------ C 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 000232 00000 ------------ G 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 000411 00000 ------------ C 0.67 0.63 0.65 T 0.33 0.37 0.35 0000 --- --- --- --- 000530 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 001040 00000 ------------ G 0.60 1.00 0.80 A 0.40 0.00 0.20 0000 --- --- --- --- 001415 00000 ------------ C 0.89 0.37 0.63 A 0.11 0.63 0.37 0000 --- --- --- --- 001607 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 001683 00000 ------------ G 0.65 0.63 0.64 A 0.35 0.37 0.36 0000 --- --- --- --- 001776 00000 ------------ - 0.35 0.37 0.36 + 0.65 0.63 0.64 0000 --- --- --- --- 001962 00030 5' UTR - 0.64 0.67 0.65 + 0.36 0.33 0.35 0000 --- --- --- --- 002157 00000 ------------ A 0.63 1.00 0.83 G 0.37 0.00 0.17 0000 --- --- --- --- 002175 00000 ------------ A 0.89 1.00 0.95 T 0.11 0.00 0.05 0000 --- --- --- --- 002337 00000 ------------ C 0.84 1.00 0.93 T 0.16 0.00 0.07 0000 --- --- --- --- 002342 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 002403 00000 ------------ - 0.23 0.00 0.12 + 0.77 1.00 0.88 0000 --- --- --- --- 002425 00000 ------------ G 0.65 0.63 0.64 A 0.35 0.37 0.36 0000 --- --- --- --- 002446 00000 ------------ T 0.95 0.33 0.65 C 0.05 0.67 0.35 0000 --- --- --- --- 002979 00000 ------------ A 0.67 0.63 0.65 G 0.33 0.37 0.35 0000 --- --- --- --- 002987 00000 ------------ A 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 003170 00000 ------------ T 1.00 0.96 0.98 C 0.00 0.04 0.02 0000 --- --- --- --- 003215 00000 ------------ A 0.73 0.91 0.82 C 0.27 0.09 0.18 0000 --- --- --- --- 003382 00000 ------------ T 0.44 0.91 0.67 C 0.56 0.09 0.33 0000 --- --- --- --- 003422 00000 ------------ T 0.44 0.91 0.67 C 0.56 0.09 0.33 0000 --- --- --- --- 003515 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 003522 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 003817 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 004348 00000 ------------ G 0.46 0.91 0.68 A 0.54 0.09 0.32 0000 --- --- --- --- 004517 00000 ------------ C 0.44 0.91 0.67 T 0.56 0.09 0.33 0000 --- --- --- --- 004758 00000 ------------ G 0.90 0.37 0.64 A 0.10 0.63 0.36 0000 --- --- --- --- 004860 00000 ------------ T 0.43 0.91 0.67 C 0.57 0.09 0.33 0000 --- --- --- --- 005140 00000 ------------ C 0.44 0.91 0.67 G 0.56 0.09 0.33 0000 --- --- --- --- 005204 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 005255 00000 ------------ A 0.44 0.91 0.66 G 0.56 0.09 0.34 0000 --- --- --- --- 005447 00000 ------------ A 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 005694 00000 ------------ G 0.44 0.91 0.67 C 0.56 0.09 0.33 0000 --- --- --- --- 006045 00000 ------------ C 0.97 1.00 0.99 T 0.03 0.00 0.01 0000 --- --- --- --- 006072 00000 ------------ A 0.44 0.91 0.72 G 0.56 0.09 0.28 0000 --- --- --- --- 006081 00000 ------------ - 0.56 0.07 0.28 + 0.44 0.93 0.72 0000 --- --- --- --- 008010 00000 ------------ A 0.97 1.00 0.99 G 0.03 0.00 0.01 0000 --- --- --- --- 008092 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 008094 00000 ------------ T 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 008446 00000 ------------ G 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 008565 00000 ------------ - 0.23 0.45 0.34 + 0.77 0.55 0.66 0000 --- --- --- --- 009153 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 009480 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 009493 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 009514 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 009572 00000 ------------ C 0.84 0.98 0.91 T 0.16 0.02 0.09 0000 --- --- --- --- 009759 00000 ------------ A 0.60 0.81 0.70 G 0.40 0.19 0.30 0000 --- --- --- --- 009817 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 009880 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 010479 00000 ------------ T 0.94 0.80 0.87 A 0.06 0.20 0.13 0000 --- --- --- --- 010492 00000 ------------ G 1.00 0.89 0.95 A 0.00 0.11 0.05 0000 --- --- --- --- 010553 00000 ------------ - 0.98 1.00 0.99 + 0.02 0.00 0.01 0000 --- --- --- --- 010584 00000 ------------ T 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 010823 00000 ------------ A 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 011242 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 011318 00000 ------------ T 0.83 1.00 0.91 A 0.17 0.00 0.09 0000 --- --- --- --- 011754 00000 ------------ C 0.96 0.76 0.87 A 0.04 0.24 0.13 0000 --- --- --- --- 012014 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 012121 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 012131 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012345 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 012407 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 012441 00000 ------------ C 0.86 1.00 0.93 G 0.14 0.00 0.07 0000 --- --- --- --- 012520 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012753 00000 ------------ C 0.85 1.00 0.92 T 0.15 0.00 0.08 0000 --- --- --- --- 012861 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 012958 00000 ------------ G 0.88 1.00 0.93 A 0.12 0.00 0.07 0000 --- --- --- --- 014258 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 014353 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 014365 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 014935 00000 ------------ T 0.96 0.76 0.86 C 0.04 0.24 0.14 0000 --- --- --- --- 014941 00000 ------------ T 0.67 1.00 0.83 G 0.33 0.00 0.17 0000 --- --- --- --- 015007 00000 ------------ T 0.70 1.00 0.85 C 0.30 0.00 0.15 0000 --- --- --- --- 015168 00000 ------------ T 0.67 1.00 0.83 C 0.33 0.00 0.17 0000 --- --- --- --- 015200 00000 ------------ C 1.00 0.93 0.97 T 0.00 0.07 0.03 0000 --- --- --- --- 015203 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 015277 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 015352 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 015447 00000 ------------ A 0.65 0.87 0.76 G 0.35 0.13 0.24 0000 --- --- --- --- 015648 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 016139 00000 ------------ T 0.81 1.00 0.91 A 0.19 0.00 0.09 0000 --- --- --- --- 016219 00000 ------------ C 0.85 1.00 0.92 T 0.15 0.00 0.08 0000 --- --- --- --- 016235 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 016283 00000 ------------ T 0.70 0.98 0.83 C 0.30 0.02 0.17 0000 --- --- --- --- 016533 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 017075 00000 ------------ T 0.69 1.00 0.84 C 0.31 0.00 0.16 0000 --- --- --- --- 018963 00000 ------------ T 0.78 1.00 0.89 G 0.23 0.00 0.11 0000 --- --- --- --- 019104 00000 ------------ G 0.67 0.35 0.51 A 0.33 0.65 0.49 0000 --- --- --- --- 019128 00000 ------------ C 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 019277 00000 ------------ T 0.62 0.65 0.64 C 0.38 0.35 0.36 0000 --- --- --- --- 019459 00000 ------------ T 0.73 1.00 0.86 A 0.27 0.00 0.14 0000 --- --- --- --- 019843 00000 ------------ G 0.96 0.78 0.87 A 0.04 0.22 0.13 0000 --- --- --- --- 019900 00000 ------------ G 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 019979 00000 ------------ A 0.88 1.00 0.94 C 0.12 0.00 0.06 0000 --- --- --- --- 020426 00000 ------------ G 0.88 1.00 0.94 A 0.12 0.00 0.06 0000 --- --- --- --- 020504 00000 ------------ C 0.48 0.65 0.56 T 0.52 0.35 0.44 0000 --- --- --- --- 020544 00000 ------------ C 0.48 0.65 0.56 T 0.52 0.35 0.44 0000 --- --- --- --- 020937 00000 ------------ C 0.48 0.64 0.55 T 0.52 0.36 0.45 0000 --- --- --- --- 020984 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 021048 00000 ------------ G 0.85 1.00 0.92 A 0.15 0.00 0.08 0000 --- --- --- --- 021248 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 021434 00000 ------------ C 0.48 0.65 0.56 T 0.52 0.35 0.44 0000 --- --- --- --- 021500 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 021607 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 021661 00000 ------------ G 0.85 1.00 0.92 A 0.15 0.00 0.08 0000 --- --- --- --- 022214 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 025315 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 025332 00000 ------------ C 1.00 0.87 0.94 T 0.00 0.13 0.06 0000 --- --- --- --- 025398 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 025493 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 025500 00000 ------------ G 0.94 1.00 0.97 A 0.06 0.00 0.03 0000 --- --- --- --- 025501 00000 ------------ T 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 025542 00000 ------------ A 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 025575 00000 ------------ A 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 025851 00000 ------------ G 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 025876 00000 ------------ A 0.94 0.74 0.84 G 0.06 0.26 0.16 0000 --- --- --- --- 025939 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 026003 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 026154 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 026435 00000 ------------ T 0.92 1.00 0.96 C 0.08 0.00 0.04 0000 --- --- --- --- 026437 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 026528 00218 NON-SYN G 0.98 1.00 0.99 A 0.02 0.00 0.01 0057 GAG AAG GLU(E) LYS(K) 026555 00245 NON-SYN C 0.92 1.00 0.96 T 0.08 0.00 0.04 0066 CCC TCC PRO(P) SER(S) 026728 00000 ------------ G 0.96 0.22 0.60 A 0.04 0.78 0.40 0000 --- --- --- --- 026751 00000 ------------ G 0.85 0.22 0.54 A 0.15 0.78 0.46 0000 --- --- --- --- 026773 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 026849 00000 ------------ G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 027031 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 027033 00000 ------------ C 0.75 0.98 0.86 T 0.25 0.02 0.14 0000 --- --- --- --- 027072 00000 ------------ G 1.00 0.93 0.97 A 0.00 0.07 0.03 0000 --- --- --- --- 027074 00000 ------------ T 0.73 0.98 0.85 C 0.27 0.02 0.15 0000 --- --- --- --- 027262 00000 ------------ G 0.92 1.00 0.96 A 0.08 0.00 0.04 0000 --- --- --- --- 027285 00000 ------------ C 1.00 0.93 0.97 T 0.00 0.07 0.03 0000 --- --- --- --- 027768 00000 ------------ G 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 028010 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 028066 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 028139 00000 ------------ C 0.74 0.98 0.86 T 0.26 0.02 0.14 0000 --- --- --- --- 028155 00000 ------------ C 0.74 0.98 0.86 T 0.26 0.02 0.14 0000 --- --- --- --- 028265 00000 ------------ G 0.89 1.00 0.95 T 0.11 0.00 0.05 0000 --- --- --- --- 028456 00000 ------------ G 0.80 1.00 0.90 A 0.20 0.00 0.10 0000 --- --- --- --- 028497 00000 ------------ G 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 028786 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 028957 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 029258 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 029404 00481 SYNON C 0.90 1.00 0.95 T 0.10 0.00 0.05 0144 AGC AGT SER(S) SER(S) 029492 00000 ------------ T 0.65 0.96 0.80 G 0.35 0.04 0.20 0000 --- --- --- --- 029599 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 029637 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 029656 00000 ------------ G 0.91 1.00 0.96 A 0.09 0.00 0.04 0000 --- --- --- --- 029670 00000 ------------ G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 029690 00000 ------------ G 0.91 1.00 0.96 C 0.09 0.00 0.04 0000 --- --- --- --- 029964 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 029984 00000 ------------ A 0.96 0.15 0.56 G 0.04 0.85 0.44 0000 --- --- --- --- 030058 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 030068 00000 ------------ T 0.27 0.85 0.55 C 0.73 0.15 0.45 0000 --- --- --- --- 030113 00000 ------------ - 0.00 0.02 0.01 + 1.00 0.98 0.99 0000 --- --- --- --- 030173 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 030362 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 030406 00000 ------------ A 0.62 0.85 0.73 G 0.38 0.15 0.27 0000 --- --- --- --- 030520 00000 ------------ T 1.00 0.89 0.95 C 0.00 0.11 0.05 0000 --- --- --- --- 030802 00535 SYNON C 1.00 0.97 0.99 T 0.00 0.03 0.01 0162 GCC GCT ALA(A) ALA(A) 030925 00658 SYNON T 0.94 1.00 0.97 C 0.06 0.00 0.03 0203 ACT ACC THR(T) THR(T) 030974 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 031237 00000 ------------ G 0.85 0.15 0.51 A 0.15 0.85 0.49 0000 --- --- --- --- 031358 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 031487 00000 ------------ T 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 031687 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 032079 00853 SYNON C 0.98 1.00 0.99 T 0.02 0.00 0.01 0268 GCC GCT ALA(A) ALA(A) 033031 00000 ------------ A 0.98 0.24 0.61 C 0.02 0.76 0.39 0000 --- --- --- --- 033635 00000 ------------ G 0.93 0.30 0.60 C 0.07 0.70 0.40 0000 --- --- --- --- 033725 00000 ------------ C 0.71 1.00 0.86 T 0.29 0.00 0.14 0000 --- --- --- --- 034112 00000 ------------ G 1.00 0.30 0.65 A 0.00 0.70 0.35 0000 --- --- --- --- 034532 00000 ------------ C 0.65 1.00 0.82 T 0.35 0.00 0.18 0000 --- --- --- --- 034701 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 035005 01274 NON-SYN G 0.96 1.00 0.98 A 0.04 0.00 0.02 0409 GCC ACC ALA(A) THR(T) 035269 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 035787 00000 ------------ C 0.94 1.00 0.97 T 0.06 0.00 0.03 0000 --- --- --- --- 036174 00000 ------------ C 0.83 0.71 0.78 G 0.17 0.29 0.22 0000 --- --- --- --- 036448 01481 3' UTR C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 036453 01486 3' UTR G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 036740 01773 3' UTR G 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 036808 01841 3' UTR A 0.31 0.98 0.64 G 0.69 0.02 0.36 0000 --- --- --- --- 036938 01971 3' UTR C 0.85 0.74 0.80 A 0.15 0.26 0.20 0000 --- --- --- --- 036960 01993 3' UTR T 0.29 0.96 0.62 C 0.71 0.04 0.38 0000 --- --- --- --- 037029 02062 3' UTR T 0.94 1.00 0.97 G 0.06 0.00 0.03 0000 --- --- --- --- 037097 02130 3' UTR C 1.00 0.76 0.88 T 0.00 0.24 0.12 0000 --- --- --- --- 037196 02229 3' UTR A 0.76 0.98 0.87 G 0.24 0.02 0.13 0000 --- --- --- --- 037276 02309 3' UTR G 0.87 0.74 0.80 A 0.13 0.26 0.20 0000 --- --- --- --- 037476 02509 3' UTR G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 037602 02635 3' UTR A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 037633 02666 3' UTR A 0.56 1.00 0.77 C 0.44 0.00 0.23 0000 --- --- --- --- 037670 02703 3' UTR T 0.56 1.00 0.77 C 0.44 0.00 0.23 0000 --- --- --- --- 037837 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 039296 00000 ------------ G 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 001776: GAGAAG 001962: C 002403: G 006081: C 008565: A 010553: C 030113: AT