Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000372 AA 0 0 0 AT 1 0 1 TT 21 23 44 0.012 0.000 0.006 000463 AA 7 9 16 AG 11 8 19 GG 4 6 10 0.008 1.965 0.885 000544 AA 18 21 39 AC 1 0 1 CC 0 0 0 0.014 0.000 0.006 000668 CC 13 18 31 CG 1 4 5 GG 0 1 1 0.019 1.252 1.649 001303 AA 13 7 20 AG 10 12 22 GG 1 4 5 0.296 0.087 0.084 001362 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 001589 AA 5 8 13 AG 9 5 14 GG 7 5 12 0.383 3.306 3.092 001685 CC 20 18 38 CT 1 0 1 TT 0 0 0 0.012 0.000 0.007 001758 CC 21 16 37 CG 0 2 2 GG 0 0 0 0.000 0.062 0.027 002637 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 002672 CC 0 0 0 CG 0 2 2 GG 24 21 45 0.000 0.048 0.022 002959 AA 21 20 41 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 003014 AA 22 19 41 AG 0 1 1 GG 0 0 0 0.000 0.013 0.006 003048 CC 0 0 0 CT 1 0 1 TT 21 20 41 0.012 0.000 0.006 003550 CC 0 2 2 CT 0 8 8 TT 21 12 33 0.000 0.153 2.181 003628 CC 0 0 0 CG 0 2 2 GG 24 21 45 0.000 0.048 0.022 003687 AA 24 22 46 AG 0 1 1 GG 0 0 0 0.000 0.011 0.005 003779 CC 0 0 0 CG 0 2 2 GG 24 21 45 0.000 0.048 0.022 003905 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 003996 AA 24 22 46 AG 0 1 1 GG 0 0 0 0.000 0.011 0.005 004021 AA 0 0 0 AC 3 0 3 CC 21 23 44 0.107 0.000 0.051 004257 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 004606 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 004965 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 005032 CC 7 9 16 CG 12 8 20 GG 4 5 9 0.087 1.352 0.357 005634 AA 16 23 39 AT 7 0 7 TT 1 0 1 0.044 0.000 0.919 005724 AA 24 22 46 AG 0 1 1 GG 0 0 0 0.000 0.011 0.005 005737 AA 1 0 1 AG 2 2 4 GG 21 21 42 4.959 0.048 3.895 005872 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 006181 GG 0 0 0 GT 5 5 10 TT 18 18 36 0.342 0.342 0.684 006254 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 006300 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 006391 CC 24 21 45 CT 0 2 2 TT 0 0 0 0.000 0.048 0.022 006393 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 006420 GG 0 0 0 GT 3 3 6 TT 21 20 41 0.107 0.112 0.218 006426 AA 5 6 11 AG 12 8 20 GG 7 9 16 0.001 1.965 0.911 006564 AA 0 0 0 AT 2 2 4 TT 22 21 43 0.045 0.048 0.093 006600 AA 17 15 32 AG 7 8 15 GG 0 0 0 0.700 1.019 1.694 006993 AA 16 23 39 AG 7 0 7 GG 1 0 1 0.044 0.000 0.919 007644 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 007669 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 007756 -- 23 23 46 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.005 007828 CC 19 23 42 CT 5 0 5 TT 0 0 0 0.324 0.000 0.148 007865 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 007907 AA 0 0 0 AG 4 0 4 GG 20 23 43 0.198 0.000 0.093 007925 AA 1 6 7 AT 9 8 17 TT 14 9 23 0.091 1.965 1.553 008002 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 008084 AA 1 6 7 AG 9 8 17 GG 14 9 23 0.091 1.965 1.553 008203 AA 24 21 45 AG 0 2 2 GG 0 0 0 0.000 0.048 0.022 008310 AA 16 9 25 AG 8 10 18 GG 0 4 4 0.960 0.175 0.087 008393 AA 24 20 44 AT 0 3 3 TT 0 0 0 0.000 0.112 0.051 008455 AA 23 23 46 AT 1 0 1 TT 0 0 0 0.011 0.000 0.005 008693 -- 1 0 1 +- 5 0 5 ++ 16 19 35 0.499 0.000 1.967 008849 CC 18 19 37 CT 5 0 5 TT 0 0 0 0.342 0.000 0.168 009014 GG 8 8 16 GT 11 8 19 TT 5 5 10 0.114 1.037 0.885 009620 CC 19 23 42 CT 3 0 3 TT 0 0 0 0.118 0.000 0.054 009643 GG 0 0 0 GT 0 2 2 TT 22 21 43 0.000 0.048 0.023 009717 -- 5 6 11 +- 11 8 19 ++ 7 9 16 0.030 1.965 1.238 009731 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 009751 AA 0 0 0 AG 0 4 4 GG 23 19 42 0.000 0.209 0.095 009975 GG 7 9 16 GT 12 8 20 TT 5 6 11 0.001 1.965 0.911 010046 CC 8 9 17 CT 11 8 19 TT 5 6 11 0.114 1.965 1.491 010475 CC 15 23 38 CT 7 0 7 TT 1 0 1 0.025 0.000 0.875 010885 AA 0 0 0 AC 8 8 16 CC 16 15 31 0.960 1.019 1.978 010951 AA 24 21 45 AT 0 2 2 TT 0 0 0 0.000 0.048 0.022 011247 AA 23 15 38 AG 1 8 9 GG 0 0 0 0.011 1.019 0.527 012104 AA 4 6 10 AG 9 7 16 GG 6 8 14 0.034 2.249 1.473 012455 AA 1 0 1 AG 7 0 7 GG 15 23 38 0.025 0.000 0.875 012501 AA 1 1 2 AG 3 4 7 GG 20 18 38 2.617 1.252 3.666 012592 AA 22 21 43 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 012752 AA 1 0 1 AG 7 0 7 GG 16 17 33 0.044 0.000 0.654 012861 CC 23 19 42 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 012889 CC 24 12 36 CG 0 7 7 GG 0 0 0 0.000 0.969 0.338 013281 CC 20 23 43 CT 3 0 3 TT 0 0 0 0.112 0.000 0.052 013284 CC 23 11 34 CT 0 9 9 TT 0 3 3 0.000 0.277 3.687 013978 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 014010 AA 1 6 7 AG 9 8 17 GG 14 9 23 0.091 1.965 1.553 014292 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 014626 CC 5 6 11 CT 10 8 18 TT 8 9 17 0.306 1.965 1.911 014634 CC 19 20 39 CT 4 3 7 TT 0 0 0 0.209 0.112 0.312 014777 -- 0 2 2 +- 0 7 7 ++ 23 13 36 0.000 0.505 3.404 014954 GG 0 0 0 GT 1 0 1 TT 21 23 44 0.012 0.000 0.006 015107 AA 8 9 17 AC 11 8 19 CC 4 6 10 0.004 1.965 1.096 016004 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 016406 AA 21 23 44 AG 3 0 3 GG 0 0 0 0.107 0.000 0.051 016424 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.011 0.000 0.005 016444 GG 14 9 23 GT 9 8 17 TT 1 6 7 0.091 1.965 1.553 016465 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 016878 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 017080 AA 19 22 41 AC 1 0 1 CC 0 0 0 0.013 0.000 0.006 017087 CC 0 0 0 CT 3 0 3 TT 18 22 40 0.124 0.000 0.056 017183 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 017251 AA 0 1 1 AT 0 8 8 TT 24 14 38 0.000 0.011 0.516 017314 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 017323 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 017526 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 017589 GG 0 0 0 GT 8 8 16 TT 16 15 31 0.960 1.019 1.978 017937 AA 5 6 11 AG 12 8 20 GG 7 9 16 0.001 1.965 0.911 018116 CC 21 21 42 CT 3 0 3 TT 0 0 0 0.107 0.000 0.054 018139 CC 5 6 11 CT 11 8 19 TT 8 7 15 0.114 1.173 0.997 018325 AA 5 6 11 AG 11 7 18 GG 7 8 15 0.030 2.249 1.348 018696 AA 21 23 44 AG 2 0 2 GG 0 0 0 0.048 0.000 0.023 018924 CC 19 23 42 CG 3 0 3 GG 0 0 0 0.118 0.000 0.054 019556 CC 0 0 0 CT 7 7 14 TT 11 14 25 1.049 0.840 1.866 019562 CC 0 0 0 CG 0 2 2 GG 18 20 38 0.000 0.050 0.026 020088 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 027144 CC 20 21 41 CT 2 2 4 TT 1 0 1 4.707 0.048 3.784 027328 AA 0 0 0 AG 0 2 2 GG 23 21 44 0.000 0.048 0.023 027384 -- 0 0 0 +- 0 3 3 ++ 23 20 43 0.000 0.112 0.052 027511 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 027609 CC 0 0 0 CT 1 0 1 TT 22 22 44 0.011 0.000 0.006 027852 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 027911 AA 5 9 14 AG 10 7 17 GG 4 6 10 0.059 2.719 1.086 028122 -- 0 0 0 +- 1 0 1 ++ 21 21 42 0.012 0.000 0.006 029566 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 029597 AA 0 0 0 AC 0 2 2 CC 23 20 43 0.000 0.050 0.023 029642 CC 7 9 16 CT 10 7 17 TT 5 6 11 0.153 2.719 2.075 029887 AA 0 0 0 AC 0 2 2 CC 23 21 44 0.000 0.048 0.023 030647 AA 19 23 42 AC 4 0 4 CC 0 0 0 0.209 0.000 0.095 030783 CC 21 23 44 CG 2 0 2 GG 0 0 0 0.048 0.000 0.023 030826 AA 0 0 0 AC 0 1 1 CC 23 22 45 0.000 0.011 0.006 030875 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 031008 -- 0 0 0 +- 1 0 1 ++ 23 22 45 0.011 0.000 0.006 031422 CC 21 21 42 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 031680 -- 1 5 6 +- 3 6 9 ++ 19 11 30 2.457 3.711 8.751 032125 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 032126 AA 0 0 0 AG 4 0 4 GG 20 23 43 0.198 0.000 0.093 032221 AA 7 7 14 AC 11 9 20 CC 6 7 13 0.160 1.087 1.037 032282 AA 24 21 45 AG 0 1 1 GG 0 0 0 0.000 0.012 0.006 032691 CC 23 21 44 CT 1 1 2 TT 0 0 0 0.011 0.012 0.023 032957 AA 2 6 8 AG 8 8 16 GG 14 9 23 0.296 1.965 2.751 033193 CC 0 0 0 CG 0 2 2 GG 23 19 42 0.000 0.053 0.024 033645 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 033891 GG 0 0 0 GT 0 2 2 TT 24 21 45 0.000 0.048 0.022 033953 CC 0 4 4 CT 8 10 18 TT 16 9 25 0.960 0.175 0.087 034035 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 034492 CC 1 1 2 CG 3 2 5 GG 19 18 37 2.457 4.203 6.392 034563 CC 20 20 40 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 034844 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 034997 CC 21 23 44 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 035468 CC 0 0 0 CT 0 8 8 TT 22 15 37 0.000 1.019 0.428 036023 GG 19 16 35 GT 3 0 3 TT 0 0 0 0.118 0.000 0.064 036057 AA 22 14 36 AG 0 2 2 GG 0 0 0 0.000 0.071 0.028 036063 AA 2 5 7 AG 9 6 15 GG 11 5 16 0.007 1.000 1.017 036502 GG 16 10 26 GT 8 7 15 TT 0 0 0 0.960 1.143 2.055 036871 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 037106 CC 16 15 31 CT 8 8 16 TT 0 0 0 0.960 1.019 1.978 037316 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 037344 AA 24 22 46 AC 0 1 1 CC 0 0 0 0.000 0.011 0.005 037456 AA 13 9 22 AG 9 8 17 GG 2 6 8 0.061 1.965 1.998 037896 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 038130 AA 0 1 1 AG 0 8 8 GG 22 14 36 0.000 0.011 0.450 038668 AA 3 6 9 AG 9 8 17 GG 11 9 20 0.277 1.965 2.147 039497 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 039986 CC 20 22 42 CT 4 0 4 TT 0 0 0 0.198 0.000 0.095 040399 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 040400 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 041263 CC 24 21 45 CT 0 2 2 TT 0 0 0 0.000 0.048 0.022 041825 AA 0 4 4 AG 8 4 12 GG 16 6 22 0.960 2.431 1.311 041991 CC 20 14 34 CT 4 0 4 TT 0 0 0 0.198 0.000 0.117 042250 CC 24 13 37 CG 0 2 2 GG 0 0 0 0.000 0.077 0.027 042791 AA 0 1 1 AG 0 8 8 GG 24 14 38 0.000 0.011 0.516 042887 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 042951 AA 0 0 0 AC 0 1 1 CC 24 22 46 0.000 0.011 0.005 043723 AA 22 21 43 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 044117 CC 6 6 12 CT 10 8 18 TT 8 9 17 0.621 1.965 2.385 044138 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 044655 CC 0 0 0 CT 0 1 1 TT 24 22 46 0.000 0.011 0.005 045095 GG 0 0 0 GT 0 2 2 TT 24 17 41 0.000 0.059 0.024 046343 -- 1 0 1 +- 0 0 0 ++ 22 22 44 23.000 0.000 45.000 046403 AA 21 19 40 AG 0 1 1 GG 0 0 0 0.000 0.013 0.006 046532 AA 0 0 0 AG 8 0 8 GG 16 22 38 0.960 0.000 0.417 046566 AA 0 0 0 AG 2 0 2 GG 22 22 44 0.045 0.000 0.023 046777 CC 19 21 40 CG 4 2 6 GG 1 0 1 1.361 0.048 1.527 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 007756: C 008693: CTCT 009717: A 014777: A 027384: g 028122: A 031008: t 031680: tt 046343: t