Site CDNA-Pos Description Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Protein-Pos Codon1 Codon2 Amino1 Amino2 000395 00000 ------------ T 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 000452 00000 ------------ T 1.00 0.98 0.99 C 0.00 0.02 0.01 0000 --- --- --- --- 002147 00575 NON-SYN T 0.74 1.00 0.88 C 0.26 0.00 0.12 0100 TAC CAC TYR(Y) HIS(H) 002230 00658 NON-SYN G 0.95 1.00 0.97 C 0.05 0.00 0.03 0127 CAG CAC GLN(Q) HIS(H) 002285 00713 NON-SYN C 0.95 1.00 0.97 T 0.05 0.00 0.03 0146 CCA TCA PRO(P) SER(S) 002378 00806 NON-SYN T 0.82 1.00 0.91 A 0.17 0.00 0.09 0177 TCC ACC SER(S) THR(T) 002430 00858 NON-SYN C 1.00 0.97 0.99 T 0.00 0.03 0.01 0194 GCC GTC ALA(A) VAL(V) 002499 00927 NON-SYN G 0.86 1.00 0.93 A 0.14 0.00 0.07 0217 CGA CAA ARG(R) GLN(Q) 002863* 003210 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 003477 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 003559 00000 ------------ A 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 003649 00000 ------------ G 0.95 1.00 0.98 C 0.05 0.00 0.02 0000 --- --- --- --- 003897 00000 ------------ C 0.88 1.00 0.94 T 0.12 0.00 0.06 0000 --- --- --- --- 004167 00000 ------------ - 0.15 0.00 0.07 + 0.85 1.00 0.93 0000 --- --- --- --- 004536 00000 ------------ - 0.02 0.02 0.02 + 0.98 0.98 0.98 0000 --- --- --- --- 004699 00000 ------------ A 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 004744 00000 ------------ G 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 005177 00000 ------------ A 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 005213 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 005419 00000 ------------ - 0.12 0.00 0.06 + 0.88 1.00 0.94 0000 --- --- --- --- 005435 00000 ------------ G 0.83 1.00 0.91 C 0.17 0.00 0.09 0000 --- --- --- --- 005439 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 005630 00000 ------------ A 0.66 0.98 0.82 G 0.34 0.02 0.18 0000 --- --- --- --- 005789 00000 ------------ A 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 006086 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 006655 00000 ------------ C 0.81 1.00 0.90 T 0.19 0.00 0.10 0000 --- --- --- --- 006684 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 006745 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 007515 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 007574 00000 ------------ C 0.71 1.00 0.85 T 0.29 0.00 0.15 0000 --- --- --- --- 007692 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 007698 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 007813 00000 ------------ C 0.71 1.00 0.85 T 0.29 0.00 0.15 0000 --- --- --- --- 009031 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 009318 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 009365 00000 ------------ A 0.85 1.00 0.93 G 0.15 0.00 0.07 0000 --- --- --- --- 009579 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 009764 00000 ------------ T 0.72 1.00 0.86 C 0.28 0.00 0.14 0000 --- --- --- --- 009781 00000 ------------ G 0.87 1.00 0.93 A 0.13 0.00 0.07 0000 --- --- --- --- 010199 00000 ------------ A 0.71 1.00 0.84 G 0.29 0.00 0.16 0000 --- --- --- --- 010219 00000 ------------ G 0.89 1.00 0.94 A 0.11 0.00 0.06 0000 --- --- --- --- 010220 00000 ------------ T 0.77 1.00 0.88 C 0.23 0.00 0.12 0000 --- --- --- --- 012596 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 013092 00000 ------------ T 0.98 1.00 0.99 C 0.02 0.00 0.01 0000 --- --- --- --- 013256 00000 ------------ C 0.91 1.00 0.95 T 0.09 0.00 0.05 0000 --- --- --- --- 013329 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 013417 00000 ------------ C 0.87 1.00 0.93 T 0.13 0.00 0.07 0000 --- --- --- --- 013593 00000 ------------ C 1.00 0.97 0.99 T 0.00 0.03 0.01 0000 --- --- --- --- 013758 00000 ------------ T 0.85 1.00 0.92 C 0.15 0.00 0.08 0000 --- --- --- --- 014253 00000 ------------ A 0.85 1.00 0.92 G 0.15 0.00 0.08 0000 --- --- --- --- 014708 00000 ------------ - 0.71 1.00 0.84 + 0.29 0.00 0.16 0000 --- --- --- --- 014916 00000 ------------ G 0.71 1.00 0.85 C 0.29 0.00 0.15 0000 --- --- --- --- 015140 00000 ------------ C 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 015255 00000 ------------ T 0.96 1.00 0.98 C 0.04 0.00 0.02 0000 --- --- --- --- 015291 00000 ------------ G 0.85 1.00 0.92 C 0.15 0.00 0.08 0000 --- --- --- --- 015391 00000 ------------ C 0.83 1.00 0.91 T 0.17 0.00 0.09 0000 --- --- --- --- 015417 00000 ------------ G 0.96 1.00 0.98 A 0.04 0.00 0.02 0000 --- --- --- --- 015618 00000 ------------ C 0.85 1.00 0.92 T 0.15 0.00 0.08 0000 --- --- --- --- 015619 00000 ------------ A 0.65 0.98 0.80 G 0.35 0.02 0.20 0000 --- --- --- --- 016062 00000 ------------ G 0.85 1.00 0.93 A 0.15 0.00 0.07 0000 --- --- --- --- 016323 00000 ------------ G 0.88 1.00 0.94 A 0.12 0.00 0.06 0000 --- --- --- --- 016446 00000 ------------ G 1.00 0.98 0.99 T 0.00 0.02 0.01 0000 --- --- --- --- 016534 00000 ------------ C 0.92 0.98 0.95 G 0.08 0.02 0.05 0000 --- --- --- --- 016616 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 016664 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 016818 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 017136 00000 ------------ A 1.00 0.96 0.98 G 0.00 0.04 0.02 0000 --- --- --- --- 017392 00000 ------------ T 0.74 1.00 0.87 C 0.26 0.00 0.13 0000 --- --- --- --- 017554 00000 ------------ A 0.87 1.00 0.93 G 0.13 0.00 0.07 0000 --- --- --- --- 018054 00000 ------------ G 0.97 1.00 0.99 A 0.03 0.00 0.01 0000 --- --- --- --- 018399 01390 SYNON C 1.00 0.98 0.99 T 0.00 0.02 0.01 0371 AAC AAT ASN(N) ASN(N) 018555 01546 SYNON C 0.85 1.00 0.92 T 0.15 0.00 0.08 0423 CGC CGT ARG(R) ARG(R) 018805 00000 ------------ A 1.00 0.98 0.99 G 0.00 0.02 0.01 0000 --- --- --- --- 019245 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 019394 00000 ------------ C 1.00 0.95 0.98 T 0.00 0.05 0.02 0000 --- --- --- --- 019433 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 019585 00000 ------------ A 0.83 1.00 0.91 G 0.17 0.00 0.09 0000 --- --- --- --- 019798 00000 ------------ C 0.90 1.00 0.95 T 0.10 0.00 0.05 0000 --- --- --- --- 019810 00000 ------------ C 1.00 0.74 0.88 T 0.00 0.26 0.12 0000 --- --- --- --- 019871 00000 ------------ T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 020012 00000 ------------ C 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 020018 00000 ------------ G 0.90 1.00 0.95 A 0.10 0.00 0.05 0000 --- --- --- --- 020659 00000 ------------ C 0.98 1.00 0.99 T 0.02 0.00 0.01 0000 --- --- --- --- 020761 01768 NON-SYN A 0.98 1.00 0.99 T 0.02 0.00 0.01 0497 AAA AAT LYS(K) ASN(N) 020765 01772 NON-SYN A 0.98 1.00 0.99 C 0.02 0.00 0.01 0499 AAC CAC ASN(N) HIS(H) 020829 00000 ------------ - 0.96 1.00 0.98 + 0.04 0.00 0.02 0000 --- --- --- --- 021607 02182 SYNON G 0.93 1.00 0.97 A 0.07 0.00 0.03 0635 CCG CCA PRO(P) PRO(P) 021944 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 022066 00000 ------------ G 1.00 0.98 0.99 A 0.00 0.02 0.01 0000 --- --- --- --- 022077 00000 ------------ C 0.71 1.00 0.85 T 0.29 0.00 0.15 0000 --- --- --- --- 022242 00000 ------------ T 0.68 1.00 0.85 C 0.33 0.00 0.15 0000 --- --- --- --- 022749 02539 SYNON G 0.90 1.00 0.95 A 0.10 0.00 0.05 0754 CCG CCA PRO(P) PRO(P) 022973 00000 ------------ A 0.95 1.00 0.98 G 0.05 0.00 0.02 0000 --- --- --- --- 023687 00000 ------------ A 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- 023811 00000 ------------ C 0.91 1.00 0.96 T 0.09 0.00 0.04 0000 --- --- --- --- 024002 00000 ------------ G 0.84 1.00 0.92 A 0.16 0.00 0.08 0000 --- --- --- --- 024052 00000 ------------ G 0.89 1.00 0.95 A 0.11 0.00 0.05 0000 --- --- --- --- 025036 00000 ------------ G 0.96 0.98 0.97 A 0.04 0.02 0.03 0000 --- --- --- --- 025091 00000 ------------ C 0.85 1.00 0.93 T 0.15 0.00 0.07 0000 --- --- --- --- 025314 00000 ------------ G 0.95 1.00 0.98 A 0.05 0.00 0.02 0000 --- --- --- --- 025346 00000 ------------ C 0.86 1.00 0.93 T 0.14 0.00 0.07 0000 --- --- --- --- 026251 03089 NON-SYN C 0.90 1.00 0.95 A 0.10 0.00 0.05 0938 CGT AGT ARG(R) SER(S) 026423 00000 ------------ - 0.04 0.00 0.02 + 0.96 1.00 0.98 0000 --- --- --- --- 026424 00000 ------------ C 0.96 1.00 0.98 T 0.04 0.00 0.02 0000 --- --- --- --- 026440 00000 ------------ T 0.93 1.00 0.97 C 0.07 0.00 0.03 0000 --- --- --- --- 026782 00000 ------------ C 0.92 1.00 0.96 T 0.08 0.00 0.04 0000 --- --- --- --- 026892 00000 ------------ G 0.96 0.91 0.93 C 0.04 0.09 0.07 0000 --- --- --- --- 026894 00000 ------------ C 0.91 0.91 0.91 G 0.09 0.09 0.09 0000 --- --- --- --- 026898 00000 ------------ C 0.93 1.00 0.97 A 0.07 0.00 0.03 0000 --- --- --- --- 027141 03448 SYNON C 1.00 0.97 0.99 T 0.00 0.03 0.01 1057 GCC GCT ALA(A) ALA(A) 027335 03642 3' UTR T 0.90 1.00 0.95 C 0.10 0.00 0.05 0000 --- --- --- --- 027383 03690 3' UTR G 1.00 0.96 0.98 A 0.00 0.04 0.02 0000 --- --- --- --- 027520 00000 ------------ G 0.96 0.98 0.97 C 0.04 0.02 0.03 0000 --- --- --- --- 028011 00000 ------------ T 0.96 1.00 0.98 G 0.04 0.00 0.02 0000 --- --- --- --- 028330 00000 ------------ G 0.78 1.00 0.89 A 0.22 0.00 0.11 0000 --- --- --- --- 028512 00000 ------------ C 0.92 1.00 0.96 G 0.08 0.00 0.04 0000 --- --- --- --- 028631 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 028777 00000 ------------ G 0.98 1.00 0.99 A 0.02 0.00 0.01 0000 --- --- --- --- 028927 00000 ------------ C 0.98 1.00 0.99 G 0.02 0.00 0.01 0000 --- --- --- --- NOTE: AD-freq: African Descent frequency ED-freq: European Descent frequency NOTE: Diallelic insertion/deletion polymorphisms are represented as: + : allele insertion - : allele deletion The + (inserted) allele for each site is listed below: 004167: G 004536: CA 005419: C 014708: CCTTCCTTTCCTT 020829: T 026423: G The following site(s) was observed to have three alleles. The frequency for each allele is given below: Site Allele1 AD-freq ED-freq Total-freq Allele2 AD-freq ED-freq Total-freq Allele3 AD-freq ED-freq Total-freq 002863 A 0.11 0.00 0.05 C 0.00 0.02 0.01 T 0.89 0.98 0.94