************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 itga8.phase.inp itga8.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST itga8.phase.out_freqs : haplotype frequency estimates itga8.phase.out_pairs : most likely haplotype pairs for each individual itga8.phase.out_recom : estimates of recombination parameters itga8.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 159 Positions of loci: 108 147 1065 1511 1724 1792 1852 2099 2385 2417 2960 3381 3517 3566 8710 32314 32445 33490 33707 34234 34334 35174 35862 37470 37908 37960 42606 42642 42669 43046 43402 43431 43884 43922 44010 48532 49207 49971 50097 60125 60410 60418 60537 60975 61053 61276 61801 61843 62109 62252 62265 62360 62546 62738 62812 62836 63119 63188 66443 66507 66545 75740 76879 77071 77283 77379 77659 104484 104631 104867 104900 104983 105046 105345 105503 106190 106969 107370 107602 108218 108245 112335 112900 113058 113644 113945 114949 115400 115539 116165 116249 116459 116992 117185 128511 128801 134283 134439 134667 144589 144717 145164 146395 146460 146492 146726 146897 147094 147151 147160 147198 147797 148343 148465 148598 148609 149617 149951 149952 162909 162943 162974 162975 163375 163654 164094 164176 171676 172157 172533 172555 172668 172677 173238 173239 173274 173294 173502 173609 173610 173758 190232 190248 190276 190280 190309 190441 190596 191115 191146 201974 202103 203218 203247 204654 204828 205912 205914 206240 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file itga8.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 TTATADIGTTGAGGGCTGATDCACGCAATGGDAAGCGGGIGACGTGATACGATACCITTGICGGAIAACGIGTGTGCGCCCTGATAAACIACCITGGCGGTTCGCAAGGTCGCIACCCGG 1 CTTACTCGACCCTGATCIACAGGCGACACAGCATCGAG 1.000000 2 TTATADIGTTGAGGGCTGATDCACGCAATGGDAAGCGGGIGACGTGATACGATACCITTGICTGGIACCGIACACGCGTCTTAAGAAGCIACCICGACTGTTGATCGTGCCACDACCAGA 4 TGTATCAGACTCTGCTCIATAGGCGACACAACATCGAG 1.000000 3 TTATADIGTTGACGGCCGATDCACGCCATGGIAAGTTGAIGACGCGCTGCGGTACCITTGICTGAIACCGIACACGCGTTCTACTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATCAGACTCTGCTCIATGGGCGACACAACAGTGAG 1.000000 4 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAICTGAIAACCDACGTATGTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGGDACCCCG 2 CTCATTAAATTCTGATCIATGGCTGGCATAACATCGAG 2.000000 5 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGGGAIAACCDACGTATTTCCTAATAAACIACCDTGGCGGTTCGCAAGGTCGGDACCCCG 2 CTCATTCGACCCTGATCIACAGGCGACATAGCATCGAG 1.000000 6 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATCAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 7 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 5.000000 8 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGTGACATCGGA 1.000000 9 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGG 2 CTTCTTAGGCTTCAACTDCTAAGCGACACAACATCGAG 2.000000 10 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGACGTTTGATCAGGCCGCDAAAAGG 2 CTTCTTAGGCTTCAACTDCTAAGCGACACAACATCGAG 1.000000 11 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAGACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 2.000000 12 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAGACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGTGACATCGGA 1.000000 13 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAITACCDACGTATGTCCTGAGAAGCIACCICGACTGTTGATCGTGCCACDACCAGA 4 TGTATCAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 14 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCITCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGG 2 CTTCTTAGGCTTCAACTDCTAAGCGACACAACATCGAG 1.000000 15 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGDGGTGTGCGGGAGCACCDGTGICGTAIAACCDACGTATGTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGGDACCCCG 2 CTTATTCGACCCTGATCIACAAGCGACGCAACATTGAG 1.000000 16 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGDGGTGTGCGGGAGCACCDGTGICTTAIAACCDACGTATGTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGGDACCCCA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 3.000000 17 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGGGIGACGTGCTGCGGTACCIGTAICTGGITCCGIACACGCGTTCTGAGAAGCIGGCITGGCGGTTCGCAAGGTCGCDACCCGG 2 CTTATTAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 18 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGGAIGACGCGCTGCGGTACCITTGICTGAIAACGIGTGTGCGCCCTAAGCAGCIACCITGGCGGTTCGCAAGGTTGGDACCCCG 2 CTCATTAAATTCTGATCIATGGCTGGCATAACATCGAG 1.000000 19 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGGAIGACGTGATACGATACCITTGICGGAIAACGIGTGTGCGCCCTAAGCAGCIACCITGGCGGTTCGCAAGGTTGGDACCCCA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 20 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGGAIGACGTGATACGATACCITTGICGGAIAACGIGTGTGCGCCCTAAGCAGCIACCITGGCGGTTCGCAAGGTTGGDACCCCG 2 CTCATTAAATTCTGATCIATAAGCGACGCGACATCGGA 1.000000 21 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGGAIGACGTGCTGCGATCCCIGTGICTGADAACGIGTGTGCGCCCTGATAAACIACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 22 TTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGGAIAACTTGCTGCGATATTIGTGDGTGAIAATCDACGTATTTCCTGCTAAACDACCITGACGTTTGATCAGGCCGCDACAAGG 1 CTTACTCGACCCTGATCIACAGGCGACACAGCATCGAG 1.000000 23 TTATADIGTTGGGGGCTGATDCACGCCATGGIAAGCGGAIGACGTTCTGCGGTACCIGCAIGTGAIAACCDACGTATGTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGGDACCCCA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 24 TTATADIGTTGGGGGCCGGTDCGCGTCACGGIAAGTGGAIAACTTGCTGCGATATTIGTGDGTGGIACCGIACACGCGTCTTAAGAAGCIACCICGACGGTTCGCCAGGCCGCDACCAGA 4 TGTATCAGACTCTGCTCIATAAGCCATGCAAAGTTGAG 1.000000 25 TTATADIGTTGGGGGTCGGCDTGCACCATGGIGGGTGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 26 TTATADIGTTGGGGGTCGGCDTGCACCATGGIGGGTTGGIGACGTGATACGATACCITTGICTGADAACGIGTGTGCGCCCTGATAAACIACCICGATTGTTGATCGTGCCACDACCAGA 4 TGTATCAGACTCTGATCIATAAGCCACACAACATTGAG 1.000000 27 TTATADIGTTGGGGGTCGGCDTGCACCATGGIGGGTTGGIGACGTGATACGATACCITTGICTGADAACGIGTGTGCGCCCTGATAAACIACCICGATTGTTGATCGTGCCACDACCAGA 4 TGTCTTAGGCTTCAACTDCTAAGCGACACAACATCGAG 1.000000 28 TTATADIGTTGGGAGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 3.000000 29 TTATADIGTTGGGAGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTTGGDACCCCG 2 CTCATTAGACTCTGATCIATAAGCGACGTGACATCGGA 2.000000 30 TTATADIGTTGGGAGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAGACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 31 TTATADIGTTGGGAGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 32 TTATADIGTGGGGGGCTGATDCACGCCATGGDAAGCGGAIGACGTGATACGATACCITTGICGGAIAACGIGTGTGCGCCCTAAGAAGCIACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 2.000000 33 TTATADIATTGAGGGCTGATDCACGCCATGGDAAGCGCGDGGTGTGCGGGAGCACCDGTGICTTAIAACCDACGTATGTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGGDACCCCA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 34 TTATADIATTGAGGGCCGGTDCGCGTCACGGIAAGTGCGIGACGTGATACGATACCITTGICTGGIACCGIACACGCGTCTTAAGAAGCIACCICGACTGTTGATCGTGCCACDACCAGA 4 TGTATCAGACTCTGCTCIATAAGCCATGCAAAGTTGAG 1.000000 35 TTATADIATTGAGGGCCGGTDCGCGTCACGGIAAGTGGAIGACGCGCTGCGGTACCIGCAICTGAIAACCDACGTATGTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGGDACCCCG 2 CTCATTAAATTCTGATCIATGGCTGGCGCGACATCGGA 1.000000 36 TTATADIATTGAGGGCCGGTDCGCGTCACGGIAAGTGGAIGACGTGCTGCGGTACCIGCAIGTGAITACCDACGTATGTCCTGAGAAGCIACCICGACTGTTGATCGTGCCACDACCAGA 4 TGTATCAGACTCTGCTCIATAAGCCATGCAAAGTTGAG 1.000000 37 TTATADIATTGAGGGCCGGTDCGCGTCACGGIAAGTGGAIAACTTGCTGCGATATTIGTGDGTGGITCCGIACACGCGTCTTGATAAACIACCICGATTGTTGATCGTGCCACDACCAGG 1 CTTACTCGACCCTGATCIACAGGCGACACAGCATCGAG 1.000000 38 TTATADIATTGAGGGTCGGCDTGCACCATGGIGGGTTGADGGTGTGCGGGAGCACCDGTGICTTAITACCDACGTATTTCCTGCTAAACDACCITGACGGTCGATCGTACCACDCCCAGA 4 TGTATCAGACTCTGATCIATAAGCCACACAACAGTGAG 1.000000 39 TTATADIATTGACGGCCCGTICAGGCCGTAAIAGCTTGAIAACTTGCTGCGATATTIGTGDGTGGIACCGIACACGCGTCTTAAGAAACIACCITGACGTTTGATCAGGCCGCDAAAAGG 2 CTCATTAAATTCTGATCIATGGCTGGCATAACATCGAG 1.000000 40 TTATADIATTGACGGCCCGTICAGGCCGTAAIAGCTTGAIAACTTGCTGCGATATTIGTGDGTGGITCCGIACACGCGTCTTAAGAAGCIACCITAGCGGCTCGCAAGGTCGCDACCCGG 2 CTTCTTAGGCTTTGATCIATAAGCGACACAACATTGAG 1.000000 41 TTATADIATTGACGGTCGGCDTGCACCATGGIGGGTTGGIGACGTGATACGATACCITTGICTGADAACGIGTGTGCGCCCTAATAAACIACCITGGCGGTTCGCAAGGTCGCDACCCGG 2 CTTATTAGATTCTGATCIATGGCTGGCATAACATCAAG 1.000000 42 TTATADIATTGGGGGCCGGTDCACGCCGTAGIAGCTTGAIAACTTGCTGCGATATTIGTGDGTGAIAACCDACGTATGTCCTGAGAAGCIACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATCAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 43 TTATADIATGGAGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAICTGAIAACCDACGTATGTCCTAATAAATIACTDTGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 44 TTATAIIATTGAGGGCCGGTDCGCGTCACGGIAAGTGGAIAACTTGCTGCGATATTIGTGDGTGGITCCGIACACGCGTCTTAAGAAGCIACCICGACTGTTGATCGTGCCACDACCAGA 4 TGTATCAGACTCTGCTCIATAAGCCATGCAAAGTTGAG 1.000000 45 TTATGDIGTTGAGGGCTGATDCACGCCATGGDAAGCGGAIAACTTGCTGCGATATCIGTGDCTGGITCCGIACACGCGTTCTGATAAGCIGGCITGGCGGTCGATCGTACCACDCCCCGG 2 CTTCTTAGGCTTCAACTDCTGAGCGACACAACATCGAG 1.000000 46 TTATGDIGTTGAGGGCTGATDCACGCCATGGDAAGCTCGIGACGTGATACGATACCIGCAIGTGAIAACCDACGTATTTCCTGCTAAGCIACCICGACTGTTGATCGTGCCACDACCAGG 1 CTTACTCGACCCTGATCIACAGGCGACACAACAGTGAG 1.000000 47 TTATGDIGTTGAGGGCTGATDCACGCCATGGDAAGCTCGIAACTTGCTGCGATATTIGTGDGTGGITCCGIACACGCGTCTTAAGAAGCIACCITGACGGTCGATCGTACCACDCCCAGA 4 TGTATTAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 48 TTATGDIATTGAGGGCCGGTDCGCGCCATGGIAAGTGGAIAACTTGCTGCGATATTIGTGDGTGGITCCGIACACGCGTCTGAAGAAGCIACCITAGCGGCTCGCAAGGTCGCDACCCGG 2 CTCATTAGATTCTGATCIATGGCTGGCATAACATCAAG 1.000000 49 TTACADIATTGAGGGCCGGTDCGCGTCACGGIAAGTGCGIGACGTGATACGATACCITTGICGGAIAACGIGTGTGCGCCCTAAGAAGCIACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 50 TTACAIIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 51 TTACAIIATTCAGGACTGATDCACGCCATGGDAAGCGCGIGACGTGATACGATACCITTGICTGADAACGIGTGTGCGCCCTGATAAACIACCITGGCGGTTCGCAAGGTCGCIACCCGG 1 CTTACTCGACCCTGATCIACAGGCCACACAGCATCGAG 1.000000 52 TTACAIDATTCAGGACTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAICTGAIAACCDACGTATGTCCTAATAAATIACTDTGACGGTCGATCGTACCACDCCCAGG 2 CTCATTAGATTCTGATCIATGGCTGGCATAACATCAAG 2.000000 53 TTACAIDATTCAGGACTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGGGAIAACCDACGTATTTCCTAATAAACIACCDTGGCGGTTCGCAAGGTCGGDACCCCG 2 CTCATTCGACCCTGATCIACAAGCGACATAGCATCGAG 1.000000 54 TTACAIDATTCAGGACTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGGGAIAACCDACGTATTTCCTAATAAACIACCDTGGCGGTTCGCAAGGTCGGDACCCCG 2 CTCATTCGACCCTGATCIACAGGCGACATAGCATCGAG 1.000000 55 TTACAIDATTCAGGACTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGGGAIAACCDACGTATTTCCTAAGAAGCIACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 56 TTACAIDATTCAGGACTGATDCACGCCATGGDAAGCGCGDGGTGTGCGGGGGCACCDGTGICTGAIAACCDACGTATGTCCTAATAAATIACCDTGGCGGTTCGCAAGGTCGGDACCCCG 2 CTCATTAAATTCTGATCIATGGCTGGCATAACATCGAG 1.000000 57 TTACAIDATTCAGGATCGGCDTGCACCATGGIGGGTTGGIGACGTGATACGATACCITCAICTGAIAACCDACGTATGTCCTGCTAAACIACCITAGCGGCTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 58 TTACAIDATTCAGGATCGGCDTGCACCATGGIGGGTTGAIGACGTTCTGCGATCCCIGTGICTGGITCCGIACACGCGTTCTGATAAGCIGGCITGGCGGTCGATCGTACCACDCCCCGG 2 CTTCTTAGGCTTCAACTDCTAAGCGACACAACATCGAG 1.000000 59 TTACAIDACTCAGGATCGGCDTGCACCATGGIGGGTGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 2.000000 60 TTTTADIATTGAGGGCCGGTDCGCGTCACGGIAAGTGGAIAACTTGCTGCGATATTIGTGDGTGGITCCGIACACGCGTCTGAAGAAGCIACCITGGCGGTTCGCAAGGTCGCIACCCGG 1 CTTACTCGACCCTGATCIACAGGCGACATAGCATCGAG 1.000000 61 TTTTADIATTGAGGGCCGGTDCGCGTCACGGIAAGTGGAIAACTTGCTGCGATATTIGTGDGTGGITCCGIACACGCGTCTGAAGAAGCIACCICGACTGTTGATCGTGCCACDACCAGA 4 TGTATTAGACTCTGATCIATAAGCGACACAACATTGAG 1.000000 62 TTTTAIIGTTGAGGGCTGATDCACGCAATGGDAAGCGGAIGACGTGCTGCGGTACCITTGICTGGIACCGIACACGCGTTCTAATAAACIGGCITGACGGTTGATCAGGCCGCDACCAGA 4 TGTATCAGACTCTGATCIATAAGCCACACAACAGTGAG 1.000000 63 TTTTAIIATTGAGGACCCGTICAGGCCGTAAIAGCTTGAIGACGTGCTGCGATCCCIGTGICTGADAACGIGTGTGCGCCCTGATAAACIACCITGGCGGTTCGCAAGGTCGCDACCCGG 2 CTTCTTAGGCTTCAACTDCTAAGCGACACAACATCGAG 1.000000 64 TCATADIATTGGGGGTCGGCDTGCACCATGGIGGGTGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 65 TCATADIATGGAGGGCTGATDCACGCCATGGIAAGCGGAIGACGTTCTGCGGTACCIGCAIGGGAIAACCDACGTATGTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 2.000000 66 TCATADIATGGAGGGCTGATDCACGCCATGGIAAGCGGAIGACGTTCTGCGGTACCIGCAIGGGAIAACCDACGTATGTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGGDACCCCG 2 CTCATTCGACCCTGATCIACAGGCGACACAGCATCGAG 1.000000 67 TCATADIATGGAGGGCTGATDCACGCCATGGIAAGCGGAIGACGTTCTGCGGTACCIGCAIGTGAIAACCIGTGTGCGCCCTAAGAAACIACCITGGCGTTTCGCCAGGCCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 2.000000 68 TCATADIATGGAGGGCTGGTDCACGCCATGGIAAGCGGAIGACGTTCTGCGGTACCIGCAIGTGAIAACCDACGTATGTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 69 TCATADIACGGAGGGCTGATDCACGCCATGGIAAGCGGAIGACGTTCTGCGGTACCIGCAIGGGAIAACCDACGTATGTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 70 TCATADDATTCAGGACTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAICTGAIAACCDACGTATGTCCTAATAAATIACTDTGACGGTCGATCGTACCACDCCCAGG 2 CTCATTAGATTCTGATCIATGGCTGGCATAACATCAAG 1.000000 71 GTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGCGCTGCGGTACCIGCAIGTGAIAATCDACGTATTTCCTGCTAAACDACCITGGCGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 72 GTATADIGTTGGGGGCTGATDCACGCCATGGDAAGCGCGIGACGTGATACGATACCITTGICTGADAACGIGTGTGCGCCCTGATAAACIACCITGGCGGTTCGCAAGGTCGCIACCCGG 1 CTTACTCGACCCTGATCIACAGGCCACACAGCATCGAG 1.000000 73 GTATADIATTGAGGGCCGGTDCGCGCAATGGDAAGCGGGIGACGTGATACGATACCITTGICTGGIAACCDACGTATGTCCTGCTAAACIACCITGACGTTTGATCAGGCCGCDAAAAGG 2 CTTATTAGACTCTGATCIATAAGCGACACAACATCGAG 1.000000 74 GTACAIDATTCAGGATCGGCDTGCACCATGGIGGGTGGAIGACGTGATACGATACCITTGICGGAIAACGIGTGTGCGCCCTAATAAGCIACCITGACGGTTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 2.000000 75 GTACAIDATTCAGGATCGGCDTGCACCATGGIGGGTTGGIGACGTGATACGATACCITTGICTGADAACGIGTGTGCGCCCTAAGAAGCIACCITAGCGGCTCGCAAGGTCGCDACCCGA 4 TGTATTAGACTCTGATCIATAAGCGACGCGACATCGGA 1.000000 76 GTACAIDATTCAGGATCGGCDTGCACCATGGIGGGTTGGIGACGTGATACGATACCITTGICTGADAACGIGTGTGCGCCCTAAGAAGCIACCITAGCGGCTCGCAAGGTCGCDACCCGG 2 CTCATTAGATTCTGATCIATGGCTGGCATAACATCAAG 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (1,6) D002: (62,72) D003: (11,76) D004: (37,74) D005: (24,17) D006: (44,40) D007: (15,75) D008: (51,73) D009: (2,21) D010: (3,46) D011: (16,49) D012: (13,39) D013: (9,35) D014: (7,28) D015: (9,45) D016: (26,38) D033: (10,22) D034: (7,27) D035: (57,63) D036: (60,61) D037: (36,42) D038: (14,41) D039: (34,48) D040: (47,58) E001: (25,43) E002: (29,68) E003: (52,59) E004: (4,59) E005: (8,28) E006: (11,65) E007: (50,70) E008: (7,66) E009: (30,69) E010: (12,31) E011: (32,33) E012: (5,64) E013: (7,54) E014: (19,56) E015: (16,29) E016: (20,67) E017: (4,65) E018: (55,67) E019: (32,74) E020: (28,71) E021: (16,52) E022: (7,23) E023: (18,53) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 T T A T A D I G T T G A G G G C T G A T D C A C G C A A T G G D A A G C G G G I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T G A T A A A C I A C C I T G G C G G T T C G C A A G G T C G C I A C C C G G 1 C T T A C T C G A C C C T G A T C I A C A G G C G A C A C A G C A T C G A G T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T C A G A C T C T G A T C I A T A A G C G A C A C A A C A T T G A G 0 D002 (T) T (T) T A (I) I G T T G A G G G C T G A T D C A C G C A A T G G D A A G C G G A I G A C G T G C T G C G G T A C C I T T G I C T G G I A C C G I A C A C G C G T T C T A A T A A A C I G G C I T G A C G G T T G A T C A G G C C G C D A C C A G A 4 T G T A T C A G A C T C T G A T C I A T A A G C C A C [A] C A A C A G T G A G (G) T (A) T A (D) I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G T G A T A C G A T A C C I T T G I C T G A D A A C G I G T G T G C G C C C T G A T A A A C I A C C I T G G C G G T T C G C A A G G T C G C I A C C C G G 1 C T T A C T C G A C C C T G A T C I A C A G G C C A C A C A G C A T C G A G 0 D003 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A G A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G [C] G A C A T C G G A G T A C A I D A T T C A G G A T C G G C D T G C A C C A T G G I G G G T T G G I G A C G T G A T A C G A T A C C I T T G I C T G A D A A C G I G T G T G C G C C C T A A G A A G C I A C C I T A G C G G C T C G C A A G G T C G C D A C C C G G 2 C T C A T T A G A T T C T G A T C I A T G G C T G G C A T A A C A T C A A G 0 D004 T T A T A D I A T T G A G G G C C G G T D C G C G T C A C G G I A A G T G G A I A A C T T G C T G C G A T A T T I G T G D G T G G I T C C G I A C A C G C G T C T T G A T A A A C I A C C I C G A T T G T T G A T C G T G C C A C D A C C A G G 1 C T T A C T C G A C C C T G A T C I A C A G G C G A C A C A G C A T C G A G G T A C A I D A T T C A G G A T C G G C D T G C A C C A T G G I G G G T G G A I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T A A T A A G C I A C C I T G A C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 D005 T T A T A D I G T T G G G G G C (C) G (G) T D C (G) C G (T) C A (C) G G (I) A A G (T) G G (A) I (A) A C (T) T G C T G C G (A) T A (T) (T) I G T (G) (D) (G) T G G I (A) C C G I A C A C G C G T C T T A A G A A G C I A C C I C G A C G G T T C G C C A G G C C G C D A C C A G A 4 T G T A T C A G A C T C T G C T C I A T A A G C C A T G C A A A G T T G A G T T A T A D I G T T G G G G G C (T) G (A) T D C (A) C G (C) C A (T) G G (D) A A G (C) G G (G) I (G) A C (G) T G C T G C G (G) T A (C) (C) I G T (A) (I) (C) T G G I (T) C C G I A C A C G C G T T C T G A G A A G C I G G C I T G G C G G T T C G C A A G G T C G C D A C C C G G 2 C T T A T T A G A C T C T G A T C I A T A A G C G A C A C A A C A T T G A G 0 D006 T T A T A (I) I A T T G A (G) G G C C (G) G T (D) C (G) (C) G (T) C (A) (C) (G) (G) I A (A) (G) T (G) G A I A A C T T G C T G C G A T A T T I G T G D G T G G I T C C G I A C A C G C G T C T T [A] A G A A G C I A C C I C G A C T G T T G A T C G T G C C A C D A C C A G A 4 T G T A T C A G A C T C T G C T C I A T A A G C C A T G C A A A G T T G A G T T A T A (D) I A T T G A (C) G G C C (C) G T (I) C (A) (G) G (C) C (G) (T) (A) (A) I A (G) (C) T (T) G A I A A C T T G C T G C G A T A T T I G T G D G T G G I T C C G I A C A C G C G T C T T A A G A A G C I A C C I T A G C G G C T C G C A A G G T C G C D A C C C G G 2 C T T C T T A G G C T T T G A T C I A T A A G C G A C A C A A C A T T G A G 0 D007 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G D G G T G T G C G G G A G C A C C D G T G I C G T A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T T A T T C G A C C C T G A T C I A C A A G C G A C G C A A C A T T G A G G T A C A I D A T T C A G G A T C G G C D T G C A C C A T G G I G G G T T G G I G A C G T G A T A C G A T A C C I T T G I C T G A D A A C G I G T G T G C G C C C T A A G A A G C I A C C I T A G C G G C T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 D008 (T) T A (C) A (I) [I] A T T (C) A G G (A) C (T) G (A) T D C (A) C G C C A T G G D A A G C G C G I G A C G T G A T A C G A T A C C I T T G I C T G A D A A C G I G T G T G C G C C C T G A T A A A C I A C C I T G G C G G T T C G C A A G G T C G C I A C C C G G 1 C T T A C T C G A C C C T G A T C I A C A G G C C A C A C A G C A T C G A G (G) T A (T) A (D) [I] A T T (G) A G G (G) C (C) G (G) T D C (G) C G C A A T G G D A A G C G G G I G A C G T G A T A C G A T A C C I T T G I C T G G I A A C C D A C G T A T G T C C T G C T A A A C I A C C I T G A C G T T T G A T C A G G C C G C D A A A A G G 2 C T T A T T A G A C T C T G A T C I A T A A G C G A C A C A A C A T C G A G 0 D009 T T A T A D I G T T G (A) G G G C T G A T D C A C G C (A) A T G G D A A G C G G (G) I G A C G T G A T A C G A T A C C I T T G I C T G [G] I A C C G I A C A C G C G T C T T A A G A A G C I A C C I C G A C T G T T G A T C G T G C C A C D A C C A G A 4 T G T A T C A G A C T C T G C T C I A T A G G C G A C A C A A C A T C G A G T T A T A D I G T T G (G) G G G C T G A T D C A C G C (C) A T G G D A A G C G G (A) I G A C G T G C T G C G A T C C C I G T G I C T G A D A A C G I G T G T G C G C C C T G A T A A A C I A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C A C A A C A T T G A G 0 D010 T T A T A D I G T T G A C G G C C G A T D C A C G C C A T G G I A A G T T G A I G A C G C G C T G C G G T A C C I T T G I C T G A I A C C G I A C A C G C G T T C T A C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T C A G A C T C T G C T C I A T G G G C G A C A C A A C A G T G A G T T A T G D I G T T G A G G G C T G A T D C A C G C C A T G G D A A G C T C G I G A C G T G A T A C G A T A C C I G C A I G T G A I A A C C D A C G T A T T T C C T G C T A A G C I A C C I C G A [C] T G T T G A T C G T G C C A C D A C C A G G 1 C T T A C T C G A C C C T G A T C I A C A G G C G A C A C A A C A G T G A G 0 D011 T T A (T) A D I (G) T T G (G) G G G C T G (A) T D C (A) C G (C) C A (T) G G (D) A A G (C) G C G D G G T G T G C G G G A G C A C C D G T G I C T T A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C (G) C (G) A C A T (C) G (G) (A) T T A (C) A D I (A) T T G (A) G G G C [C] G (G) T D C (G) C G (T) C A (C) G G (I) A A G (T) G C G I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T A A G A A G C I A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C (A) C (A) A C A T (T) G (A) (G) 0 D012 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G [C] G C T G C G G T A C C I G C A I G T G A I T A C C D A C G T A T G T C C T G A G A A G C I A C C I C G A C T G T T G A T C G T G C C A C D A C C A G A 4 T G T A T C A G A C T C T G A T C I A T A A G C G A C A C A A C A T T G A G T T A T A D I A T T G A C G G C C C G T I C A G G C C G T A A I A G C T T G A I A A C T T G C T G C G A T A T T I G T G D G T G G I A C C G I A C A C G C G T C T T A A G A A A C I A C C I T G A C G T T T G A T C A G G C C G C D A A A A G G 2 C T C A T T A A A T T C T G A T C I A T G G C T G G C A T A A C A T C G A G 0 D013 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G G 2 C T T C T T A G G C T T C A A C T D C T A A G C G A C A C A A C A T C G A G T T A T A D I A T T G A G G G C C G G T D C G C G T C A C G G I A A G T G G A I G A C G C G C T G C G G T A C C I G C A I C T G A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T C A T T A A A T T C T G A T C I A T G G C T G G C G C G A C A T C G G A 0 D014 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T T A T A D I G T T G G G A G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 D015 T T A T (A) D I G T T G (G) G G G C T G A T D C A C G C C A T G G D A A G C G (C) (G) I (G) A C (G) (C) G C T G C G (G) T A (C) C I G (C) (A) (I) G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G G 2 C T T C T T A G G C T T C A A C T D C T (A) A G C G A C A C A A C A T C G A G T T A T (G) D I G T T G (A) G G G C T G A T D C A C G C C A T G G D A A G C G (G) (A) I (A) A C (T) (T) G C T G C G (A) T A (T) C I G (T) (G) (D) C T G G I T C C G I A C A C G C G T T C T G A T A A G C I G G C I T G G C G G T C G A T C G T A C C A C D C C C C G G 2 C T T C T T A G G C T T C A A C T D C T (G) A G C G A C A C A A C A T C G A G 0 D016 T T A T A D I G T T G G G G G T C G G C D T G C A C C A T G G I G G G T T G G I G A C G T G A T A C G A T A C C I T T G I C T G A D A A C G I G T G T G C G C C C T G A T A A A C I A C C I C G A T T G T T G A T C G T G C C A C D A C C A G A 4 T G T A T C A G A C T C T G A T C I A T A A G C C A C A C A A C A T T G A G T T A T A D I A T T G A G G G T C G G C D T G C A C C A T G G I G G G T T G A D G G T G T G C G G G A G C A C C D G T G I C T [T] A I T A C C D A C G T A T T T C C T G C T A A A C D A C C I T G A C G G T C G A T C G T A C C A C D C C C A G A 4 T G T A T C A G A C T C T G A T C I A T A A G C C A C [A] C A A C A G T G A G 0 D033 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G A C G T T T G A T C A G G C C G C D A A A A G G 2 C T T C T T A G G C T T C A A C T D C T A A G C G A C A C A A C A T C G A G T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G G A I A A C T T G C T G C G A T A T T I G T G D G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G A C G T T T G A T C A G G C C G C D A C A A G G 1 C T T A C T C G A C C C T G A T C I A C A G G C G A C A C A G C A T C G A G 0 D034 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T (A) T T A G (A) C T (C) (T) (G) A (T) (C) (I) (A) T A A G C G A C (G) C (G) A C A T C G (G) (A) T T A T A D I G T T G G G G G T C G G C D T G C A C C A T G G I G G G T T G G I G A C G T G A T A C G A T A C C I T T G I C T G A D A A C G I G T G T G C G C C C T G A T A A A C I A C C I C G A T T G T T G A T C G T G C C A C D A C C A G A 4 T G T (C) T T A G (G) C T (T) (C) (A) A (C) (T) (D) (C) T A A G C G A C (A) C (A) A C A T C G (A) (G) 0 D035 T T (A) C A I D A T T C A G G A T C G G C D T G C A C C A T G G I G G G T T G G I G A C G T G A T A C G A T A C C I T C A I C T G A I A A C C D A C G T A T G T C C T G C T A A A C I A C C I T (A) G C G G (C) T C G C A A G G T C G C D A C C C G (A) (4) (T) (G) T (A) T T A G (A) C T (C) (T) (G) A (T) (C) (I) (A) T A A G C G A C (G) C (G) A C A T C G (G) (A) T T (T) T A I I A T T G A [G] G A C C C G T I C A G G C C G T A A I A G C T T G A I G A C G T G C T G C G A T C C C I G T G I C T G A D A A C G I G T G T G C G C C C T G A T A A A C I A C C I T (G) G C G G (T) T C G C A A G G T C G C D A C C C G (G) (2) (C) (T) T (C) T T A G (G) C T (T) (C) (A) A (C) (T) (D) (C) T A A G C G A C (A) C (A) A C A T C G (A) (G) 0 D036 T T T T A [D] I A T T G A G G G C C G G T D C G C G T C A C G G I A A G T G G A I A A C T T G C T G C G A T A T T I G T G D G T G G I T C C G I A C A C G C G T C T G A A G A A G C I A C C I T G G C G G T T C G C A A G G T C G C I A C C C G G 1 C T T A C T C G A C C C T G A T C I A C A G G C G A C A (T) A G C A T C G A G T T T T A [D] I A T T G A G G G C C G G T D C G C G T C A C G G I A A G T G G A I A A C T T G C T G C G A T A T T I G T G D G T G G I T C C G I A C A C G C G T C T G A A G A A G C I A C C I C G A C T G T T G A T C G T G C C A C D A C C A G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C A (C) A A C A T T G A G 0 D037 T T A T A D I A T T G A G G G C C G G T D C G C G T C A C G G I A A G T G G A I G A C G T G C T G C G G T A C C I G C A I G T G A I T A C C D A C G T A T G T C C T G A G A A G C I A C C I C G A C T G T T G A T C G T G C C A C D A C C A G A 4 T G T A T C A G A C T C T G C T C I A T A A G C C A T G C A A A G T T G A G T T A T A D I A T T G G G G G C C G G T D C A C G C C G T A G I A G C T T G A I A A C T T G C T G C G A T A T T I G T G D G T G A I A A C C D A C G T A T G T C C T G A G A A G C I A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T C A G A C T C T G A T C I A T A A G C G A C A C A A C A T T G A G 0 D038 T T A T A D I (G) T T G (G) (G) G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I T C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G [G] [2] C [T] [T] (C) T T A G (G) (C) T (T) (C) (A) A (C) (T) (D) (C) T (A) (A) (G) (C) G (A) C A (C) A A C A T C (G) A G T T A T A D I (A) T T G (A) (C) G G T C G G C D T G C A C C A T G G I G G G T T G G I G A C G T G A T A C G A T A C C I T T G I C T G A D A A C G I G T G T G C G C C C T A A T A A A C I A C C I T G G C G G T T C G C A A G G T C G C D A C C C G G 2 C T [T] (A) T T A G (A) (T) T (C) (T) (G) A (T) (C) (I) (A) T (G) (G) (C) (T) G (G) C A (T) A A C A T C (A) A G 0 D039 T T A T (A) D I A T T G A G G G C C G G T D C G C G (T) C A (C) G G I A A G T G (C) (G) I (G) A C (G) T G (A) T (A) C G A T A (C) (C) I (T) T G (I) (C) T G G I (A) C C G I A C A C G C G T C T (T) A A G A A G C I A C C I C G A C T G T T G A T C G T G C C A C D A C C A G A 4 T G T A T C A G A C T C T G C T C I A T A A G C C A T G C A A A G T T G A G T T A T (G) D I A T T G A G G G C C G G T D C G C G (C) C A (T) G G I A A G T G (G) (A) I (A) A C (T) T G (C) T (G) C G A T A (T) (T) I (G) T G (D) (G) T G G I (T) C C G I A C A C G C G T C T (G) A A G A A G C I A C C I T A G C G G C T C G C A A G G T C G C D A C C C G G 2 C T C A T T A G A T T C T G A T C I A T G G C T G G C A T A A C A T C A A G 0 D040 T T A [T] [G] [D] [I] (G) T T (G) A G G (G) (C) (T) G (A) (T) D (C) (A) C (G) C C A T G G (D) (A) (A) G (C) T (C) (G) I A A C T T (G) C T G C G A T A T T I G T G D G T G G I T C C G I A C A C G C G T C T T A A G A A G C I A C C I T G A C G G T C G A T C G T A C C A C D C C C A G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C A C A A C A T T G A G T T A [C] [A] [I] [D] (A) T T (C) A G G (A) (T) (C) G (G) (C) D (T) (G) C (A) C C A T G G (I) (G) (G) G (T) T (G) (A) I G A C G T (T) C T G C G A T C C C I G T G I C T G G I T C C G I A C A C G C G T T C T G A T A A G C I G G C I T G G C G G T C G A T C G T A C C A C D C C C C G G 2 C T T C T T A G G C T T C A A C T D C T A A G C G A C A C A A C A T C G A G 0 E001 T T A T A D I (G) T (T) G (G) G G G T C G G C D T G C A C C A T G G I G G G T G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T T A T A D I (A) T (G) G (A) G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I C T G A I A A C C D A C G T A T G T C C T A A T A A A T I A C T D T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E002 T T A T A D I G T T G G G A G C T G (A) T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T T G G D A C C C C G 2 C T C A T T A G A C T C T G A T C I A T A A G C G A C G T G A C A T C G G A T C A T A D I A T G G A G G G C T G (G) T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G T G A I A A C C D A C G T A T G T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E003 T T A C A I D A T T C A G G A C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I C T G A I A A C C D A C G T A T G T C C T A A T A A A T I A C T D T G A C G G T C G A T C G T A C C A C D C C C A G G 2 C T C A T T A G A T T C T G A T C I A T G G C T G G C A T A A C A T C A A G T T A C A I D A C T C A G G A T C G G C D T G C A C C A T G G I G G G T G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E004 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I C T G A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T C A T T A A A T T C T G A T C I A T G G C T G G C A T A A C A T C G A G T T A C A I D A C T C A G G A T C G G C D T G C A C C A T G G I G G G T G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E005 T T A T A D I G T T G G G (G) G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G T G A C A T C G G A T T A T A D I G T T G G G (A) G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E006 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A (G) A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T C A T A D I A T G G A G G G C T G A T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G [G] G A I A A C C D A C G T A T G T C C T G C T A (A) A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E007 T T A C A I I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T C A T A D D A T T C A G G A C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I C T G A I A A C C D A C G T A T G T C C T A A T A A A T I A C T D T G A C G G T C G A T C G T A C C A C D C C C A G G 2 C T C A T T A G A T T C T G A T C I A T G G C T G G C A T A A C A T C A A G 0 E008 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T C A T A D I A T G G A G G G C T G A T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G [G] G A I A A C C D A C G T A T G T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T C A T T C G A C C C T G A T C I A C A G G C G A C A C A G C A T C G A G 0 E009 T T A T A D I G (T) T G G G A G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A (G) A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T C A T A D I A (C) G G A G G G C T G A T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G [G] G A I A A C C D A C G T A T G T C C T G C T A (A) A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E010 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A G A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G T G A C A T C G G A T T A T A D I G T T G G G A G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E011 T T A T A D I (G) T G G (G) G G G C T G A T D C A C G C C A T G G D A A G C G G A I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T A A G A A G C I A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T T A T A D I (A) T T G (A) G G G C T G A T D C A C G C C A T G G D A A G C G C G D G G T G T G C G G G A G C A C C D G T G I C T T A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E012 T (T) A T A D I (G) T T G G G G G (C) (T) G (A) (T) D (C) (A) C (G) C C A T G G (D) (A) (A) G (C) G C G I G A C G C G C T G C G G T A C C I G C A I G G G A I A A C C D A C G T A T T T C C T A A T A A A C I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T C A T T C G A C C C T G A T C I A C A G G C G A C A T A G C A T C G A G T (C) A T A D I (A) T [T] G G G G G (T) (C) G (G) (C) D (T) (G) C (A) C C A T G G (I) (G) (G) G (T) G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E013 T T A (T) A (D) (I) (G) T T (G) (G) G G (G) C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T T A (C) A (I) (D) (A) T T (C) (A) G G (A) C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G G G A I A A C C D A C G T A T T T C C T A A T A A A C I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T C A T T C G A C C C T G A T C I A C A G G C G A C A T A G C A T C G A G 0 E014 T T A (T) A (D) (I) (G) T T (G) (G) G G (G) C T G A T D C A C G C C A T G G D A A G C G G A I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T A A G C A G C I A C C I T G G C G G T T C G C A A G G T T G G D A C C C C (A) (4) (T) (G) (T) A T T A (G) A (C) T C T G A T C I A T (A) (A) (G) (C) G (A) C (G) (C) (G) A C A T C G (G) (A) T T A (C) A (I) (D) (A) T T (C) (A) G G (A) C T G A T D C A C G C C A T G G D A A G C G C G D G G T G T G C G G G G G C A C C D G T G I C T G A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C (G) (2) (C) (T) (C) A T T A (A) A (T) T C T G A T C I A T (G) (G) (C) (T) G (G) C (A) (T) (A) A C A T C G (A) (G) 0 E015 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G D G G T G T G C G G G A G C A C C D G T G I C T T A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T T A T A D I G T T G G G A G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T T G G D A C C C C G 2 C T C A T T A G A C T C T G A T C I A T A A G C G A C G T G A C A T C G G A 0 E016 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G G A I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T A A G C A G C I A C C I T G G C G G T T C G C A A G G T T G G D A C C C C G 2 C T C A T T A A A T T C T G A T C I A T A A G C G A C G C G A C A T C G G A T C A T A D I A T G G A G G G C T G A T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G T G A I A A C C I G T G T G C G C C C T A A G A A A C I A C C I T G G C G T T T C G C C A G G C C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E017 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I C (T) G A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T C A T T A A A T T C T G A T C I A T G G C T G G C A T A A C A T C G A G T C A T A D I A T G G A G G G C T G A T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G (G) G A I A A C C D A C G T A T G T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E018 T T A C A I D A T T C A G G A C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G G G A I A A C C D A C G T A T T T C C T A A G A A G C I A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T C A T A D I A T G G A G G G C T G A T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G T G A I A A C C I G T G T G C G C C C T A A G A A A C I A C C I T G G C G T T T C G C C A G G C C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E019 T T A T A D I G T (G) G G G G G C T G A T D C A C G C C A T G G D A A G C G G A I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T A A G A A G C I A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A G T A C A I D A T (T) C A G G A T C G G C D T G C A C C A T G G I G G G T G G A I G A C G T G A T A C G A T A C C I T T G I C G G A I A A C G I G T G T G C G C C C T A A T A A G C I A C C I T G A C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E020 (T) T A T A D I G T T G G G A G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A (G) T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E021 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G D G G T G T G C G G G A G C A C C D G T G I C T T A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T T A C A I D A T T C A G G A C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I C T G A I A A C C D A C G T A T G T C C T A A T A A A T I A C T D T G A C G G T C G A T C G T A C C A C D C C C A G G 2 C T C A T T A G A T T C T G A T C I A T G G C T G G C A T A A C A T C A A G 0 E022 T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G T G A I A A T C D A C G T A T T T C C T G C T A A A C D A C C I T G G C G G T T C G C A A G G T C G C D A C C C G A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A T T A T A D I G T T G G G G G C T G A T D C A C G C C A T G G I A A G C G G A I G A C G T T C T G C G G T A C C I G C A I G [T] G A I A A C C D A C G T A T G T C C T A A T A A A T I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C A 4 T G T A T T A G A C T C T G A T C I A T A A G C G A C G C G A C A T C G G A 0 E023 T T A (T) A (D) (I) (G) T T (G) (G) G G (G) C T G A T D C A C G C C A T G G D A A G C G G A I G A C G C G C T G C G G T A C C I T T G I C (T) G A I A A C G I G T G T G C G C C C T A A G C A G C I A C C I T G G C G G T T C G C A A G G T T G G D A C C C C G 2 C T C A T T A A A T T C T G A T C I A T G G C T G G C A T A A C A T C G A G T T A (C) A (I) (D) (A) T T (C) (A) G G (A) C T G A T D C A C G C C A T G G D A A G C G C G I G A C G C G C T G C G G T A C C I G C A I G (G) G A I A A C C D A C G T A T T T C C T A A T A A A C I A C C D T G G C G G T T C G C A A G G T C G G D A C C C C G 2 C T C A T T C G A C C C T G A T C I A C A A G C G A C A T A G C A T C G A G END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = = = = = = = = = = = A = = = = = = = ? ? = = = = = A = = = = = = = = = = G = ? = = = = T = A = A = = A = = = = = T T G = C G = = ? = = C G I G T = = G C G C = = = = A ? ? = = = I = = = = = = = = ? = = = = = = = = = = = = = ? I = = = = = ? ? ? ? ? = C T C = = = C = ? ? ? ? ? ? ? ? = G = = = = = = = = G = = = C = = = = = = = = = = = = = = G = = = = = = = ? ? = = = = = C = = = = = = = = = = C = ? = = = = C = C = G = = G = = = = = G C A = G T = = ? = = T C D A C = = A T T T = = = = C ? ? = = = D = = = = = = = = ? = = = = = = = = = = = = = ? D = = = = = ? ? ? ? ? = T C A = = = T = ? ? ? ? ? ? ? ? = A = = = = = = = = A = = = T = = = 0 D002 (T) = (T) = = (I) ? = = = = A = = = = = = = = = = = = = = A = = = = = = = = = ? G A = = = = = = = C = G = = G = = = = = = = = = = = = G I = C = = = A C A C = = = T T = = A = = = = = = = G G = = = = A = = = = = G A T C = = = C = = = D = = = A = A 4 T G = = T C A = = = T = = = = = = = = ? = A = = = = = ? ? = A = = G T = = = (G) = (A) = = (D) ? = = = = G = = = = = = = = = = = = = = C = = = = = = = = = ? C G = = = = = = = A = A = = A = = = = = = = = = = = = A D = A = = = G T G T = = = C C = = G = = = = = = = A C = = = = G = = = = = C G C A = = = T = = = I = = = C = G 1 C T = = C T C = = = C = = = = = = = = ? = G = = = = = ? ? = G = = T C = = = 0 D003 T = = T = D ? G ? ? G G = = G ? ? = A T = C A = G = = = = = = D A A = C G C = = = = = = C = C = G = = G = = = = = G C A = G = = = I = = T C D A C = = A T T T = = = ? C T = G A = D = = = = = G = = = = T = = = = = = = = = = = = = = = = = = A 4 T G T = = = = = = C = = = = = = = = = = A A G C = A = G ? G = = = = = G G A G = = C = I ? A ? ? C A = = A ? ? = G C = T G = A = = = = = = I G G = T T G = = = = = = T = A = A = = A = = = = = T T G = C = = = D = = C G I G T = = G C G C = = = ? A G = A G = I = = = = = A = = = = C = = = = = = = = = = = = = = = = = = G 2 C T C = = = = = = T = = = = = = = = = = G G C T = G = A ? A = = = = = A A G 0 D004 T = = T = D ? = = = G = = = G C = = = T = C = = G T = = C = = = A A = = = = = = A = = T = = C = G = = = = = T T = G = = D G T = G = T C = = = A C A C = = = T = T = ? = = = = A = = = = = = C = = T T = = = G A T C G T = C = A = = = = = A = G 1 C T = = C = C = = = C = = = = = = = = C = G = = = = = A = A G = = = = = A G G = = C = I ? = = = C = = = A T = = = C = T = = A C = = T = = = G G = = = = = = G = = G = = A = A = = = = = C C = T = = I C G = A = A A = = = G T G T = = = C = C = ? = = = = G = = = = = = T = = C G = = = C G C A A G = T = G = = = = = C = A 4 T G = = T = A = = = T = = = = = = = = T = A = = = = = G = G A = = = = = G A 0 D005 = = = = = = = = = = = = = = = = (C) = (G) = = = (G) = = (T) = = (C) = ? (I) = = = (T) = = (A) = (A) = = (T) = = = = = = = (A) = = (T) (T) = = = (G) (D) (G) = = = = (A) = = = = = = = = = = = = C T = A = = = = = = = A C = = C = A = = = = = = = = C = = = C = = = = = = = A = A 4 T G = = = C = = = = = = = = C = = = = = = = = = C = T ? ? = = A G = = = = = = = = = = = = = = = = = = = = = (T) = (A) = = = (A) = = (C) = = (T) = ? (D) = = = (C) = = (G) = (G) = = (G) = = = = = = = (G) = = (C) (C) = = = (A) (I) (C) = = = = (T) = = = = = = = = = = = = T C = G = = = = = = = G G = = T = G = = = = = = = = A = = = T = = = = = = = C = G 2 C T = = = T = = = = = = = = A = = = = = = = = = G = C ? ? = = C A = = = = = 0 D006 = = = = = (I) ? = = = = = (G) = = = = (G) = = (D) = (G) (C) = (T) = (A) (C) (G) (G) = = (A) (G) = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = C G A = T = T = G A T C G T = C = A = = = = = A = A 4 T G = A = C = ? A = = C = = C = = = = = = = ? = C = T ? ? = = A G = = = = = = = = = = (D) ? = = = = = (C) = = = = (C) = = (I) = (A) (G) = (C) = (G) (T) (A) (A) = = (G) (C) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = T A G = G = C = C G C A A G = T = G = = = = = C = G 2 C T = C = T = ? G = = T = = A = = = = = = = ? = G = C ? ? = = C A = = = = = 0 D007 T = = T = D ? G = = G G = = G C T = A T = C A = G = = = = = ? D A A = C G C = D = G T = = = C G G G A G C = = = D G = = = = G T = I = = = C D A C = = A T = T = = = ? = T = = A T = = = = D = G = = = = T = = = = = = = = = = = G = = = = = C G 2 C T = = = = C ? = = C = = = = = = = = C ? ? ? ? ? ? ? = = A = = = = T = A G G = = C = I ? A = = C A = = A T C = G C = T G = A = = = = = ? I G G = T T G = I = A C = = = A T A C G A T = = = I T = = = = T G = D = = = G I G T = = G C = C = = = ? = G = = G C = = = = I = A = = = = C = = = = = = = = = = = C = = = = = G A 4 T G = = = = A ? = = T = = = = = = = = T ? ? ? ? ? ? ? = = G = = = = C = G A 0 D008 (T) = = (C) = (I) ? = = = (C) = = = (A) = (T) = (A) = ? = (A) = ? ? C = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = A D = = = G I G T = = G C = C = = = ? A = = = = = = = = ? ? = = G = ? G = = C G C A = = = T = = ? I = C C C = = 1 = = = = C = C = = = C = = = = = = = = C ? ? ? ? ? = = = = = G = = = = = = = (G) = = (T) = (D) ? = = = (G) = = = (G) = (C) = (G) = ? = (G) = ? ? A = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = G I = = = C D A C = = A T = T = = = ? C = = = = = = = = ? ? = = A = ? T = = G A T C = = = C = = ? D = A A A = = 2 = = = = T = A = = = T = = = = = = = = T ? ? ? ? ? = = = = = A = = = = = = = 0 D009 = = = = = = = = = = = (A) = = = = = = = = = = = = = = (A) = = = = = = = = = = = (G) = = = = = = = A = A = = = = A = = = T = = = = = ? ? I = C = = = A C A C = = = T = T = A = G = = G = = = = = = C = A = T = = = G A T C G T = C = A = = = = = A = = = = = = = = C = = = = = = = = C = = = = = = G = = = = = = = = = = = = C ? ? = = = = = = = = = = = = (G) = = = = = = = = = = = = = = (C) = = = = = = = = = = = (A) = = = = = = = C = G = = = = C = = = G = = = = = ? ? D = A = = = G T G T = = = C = C = G = T = = A = = = = = = T = G = G = = = C G C A A G = T = G = = = = = C = = = = = = = = T = = = = = = = = A = = = = = = A = = = = = = = = = = = = T ? ? = 0 D010 = = = = A = = = = = = = C = = = C = = = = = = = = = = = = = = I = = = T = G A = = = = = C = C = G = = G = = = = = T T G = C = = = = = C = G I = = A C G C G = T = = A = = = = A = D = = = = T ? ? ? ? = = = C G C A A G = T = G = = = = = C = ? ? ? ? ? = T C A = = = T = = = C = = = = T G = ? = = = = = = = = = = = = = = = = = = = G = = = = = = = G = = = T = = = = = = = = = = = = = = D = = = C = C G = = = = = T = A = A = = A = = = = = G C A = G = = = = = A = C D = = G T A T T = C = = G = = = = G = I = = = = C ? ? ? ? = = = G A T C G T = C = A = = = = = A = ? ? ? ? ? = C T C = = = C = = = A = = = = C A = ? = = = = = = = = = = = = = = = 0 D011 = = = (T) = = = (G) = = = (G) = = = ? ? = (A) = ? = (A) = = (C) = = (T) = = (D) ? ? ? (C) = = = D = G T = = = C G G G A G C = = = D G = = = = T T = = = = = C D A C = = A T = T = = = = = T = = A T = = = = D = = = = = = = = = = = = = = = = = = G = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = (G) = = = = (C) = (G) (A) = = = (C) = = = (A) = = = (A) = = = ? ? = (G) = ? = (G) = = (T) = = (C) = = (I) ? ? ? (T) = = = I = A C = = = A T A C G A T = = = I T = = = = G G = = = = = G I G T = = G C = C = = = = = G = = G C = = = = I = = = = = = = = = = = = = = = = = = C = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = (A) = = = = (T) = (A) (G) 0 D012 = = = = = = = G = = = G G = = = T G A = D = = C = = = A = G G D = A G C G C G = G = = ? ? = = = = = = G = = C C = = C A I = = = ? = T A = C D = = G T A T = = = C = G = = = = G = = = = = = C = = = T G = = = = = = G T = = = A = = = C C = = A 4 T G T = = C = ? = C = = = = = = = = = = A A G C = A = ? C = = = = = T = = = = = = = = = = A = = = A C = = = C C G = I = = G = = = G = A A I = G C T T G A = A = = ? ? = = = = = = A = = T T = = T G D = = = ? = A C = G I = = A C G C = = = T = A = = = = A = = = = = = T = = = G T = = = = = = A G = = = G = = = A A = = G 2 C T C = = T = ? = T = = = = = = = = = = G G C T = G = ? T = = = = = C = = = 0 D013 = = = = = = = G = = = G = = = = T = A = ? = A = ? ? = = T = = D = = = C = C G = = = ? = = = = = = = = = = = = = = = = = = G ? = = = = = T = = = = = = = = T = = = = G C = = = = C D = = = I = = = = = = = = = = = = = = = = = ? C = = = = = G = = = = T C = = = G G C = T C A = C T D C = A A G C = A = A = A = = = = = = A G = = = = = = = A = = = A = = = = C = G = ? = G = ? ? = = C = = I = = = T = G A = = = ? = = = = = = = = = = = = = = = = = = C ? = = = = = C = = = = = = = = G = = = = A A = = = = T I = = = D = = = = = = = = = = = = = = = = = ? G = = = = = C = = = = C A = = = A A T = C T G = T C I A = G G C T = G = G = G = = = = = = G A 0 D014 = = = = = = = = = = ? = = G = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = A = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 D015 = = = = (A) = = = = = = (G) = = = = = = = = = = = ? = = = = = = = = = = = = = (C) (G) = (G) = = (G) (C) = = = = = = (G) = = (C) = = = (C) (A) (I) G ? = A = A A T C D = = G T A T T = C = = = C = = = A = D A C = = = = = = ? = = T C G C A A G G T = G = = A = = = = = = = = = = = = = ? = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = (A) = = = = = = = = = = = ? = = = = = = = = = = = = = (G) (A) = (A) = = (T) (T) = = = = = = (A) = = (T) = = = (T) (G) (D) C ? = G = T C C G I = = A C G C G = T = = = A = = = G = I G G = = = = = = ? = = C G A T C G T A C = A = = C = = = = = = = = = = = = = ? = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = 0 D016 = = = = = = = G = = ? G = = = = = = = = ? = = = = = = = = = = = = = = = = = G I = A C = = = A T A C G A T = = = I T = = = = = ? ? D A = = G I G T = = G C G C = = = = A = = = = = I = = = = C = = T T = = ? = = = = = = G = = = = = A = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = ? ? = = = = T = = = = = = = = = = = A = = ? A = = = = = = = = ? = = = = = = = = = = = = = = = = = A D = G T = = = C G G G A G C = = = D G = = = = = ? ? I T = = C D A C = = A T T T = = = = C = = = = = D = = = = T = = C G = = ? = = = = = = A = = = = = C = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = ? ? = = = = G = = = = 0 D033 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C G = G = = G C = = = = = = G = = C C = = C A I = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = A = = = = 2 = = = C T = A = G = T T C A = C T D C T = A = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G A = A = = T T = = = = = = A = = T T = = T G D = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = C = = = = 1 = = = A C = C = A = C C T G = T C I A C = G = = = = = = = = G = = = = = = = 0 D034 = = = = = = = = = = = = = = = C T = A T = C A = G = = = = = ? D A A = C G C = = = = = = C = C = G = = G = = = = = G C A = G = = = I = = T C D A C = = A T T T = = = = C = = = = = D = = = = T = G C G = = = C G C A A G = T = G = = = = = C = = = = = = (A) = = = = (A) = = (C) (T) (G) = (T) (C) (I) (A) = = = = = = = = (G) = (G) = = = = = = (G) (A) = = = = = = = = = = = = = = = T C = G C = T G = A = = = = = ? I G G = T T G = = = = = = T = A = A = = A = = = = = T T G = C = = = D = = C G I G T = = G C G C = = = = A = = = = = I = = = = C = A T T = = = G A T C G T = C = A = = = = = A = = = = = = (C) = = = = (G) = = (T) (C) (A) = (C) (T) (D) (C) = = = = = = = = (A) = (A) = = = = = = (A) (G) 0 D035 = = (A) C = = D = = = C = ? ? = T = G = C D T G C A = = A = G G = G = G = = = G = = = = = = = A = A = = = = A = = = T C A = = = = = I = = = C D A C = = A T = T = = = = C = = = = = = = = = = = (A) = = = = (C) = = = = = = = = = = = = = = = = = = (A) (4) (T) (G) = (A) = = = = (A) = = (C) (T) (G) = (T) (C) (I) (A) = = = = = = = = (G) = (G) = = = = = = (G) (A) = = (T) T = = I = = = G = ? ? = C = C = T I C A G G = = G = A A = A = C = = = A = = = = = = = C = G = = = = C = = = G T G = = = = = D = = = G I G T = = G C = C = = = = A = = = = = = = = = = = (G) = = = = (T) = = = = = = = = = = = = = = = = = = (G) (2) (C) (T) = (C) = = = = (G) = = (T) (C) (A) = (C) (T) (D) (C) = = = = = = = = (A) = (A) = = = = = = (A) (G) 0 D036 = = = ? = ? ? = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = G = G = = = C G C A A G = T = G = I = = = C = G 1 C T = = C = C = = = C = = = = = = = = C = G = = = = = = (T) = G = = = C = = = = = = ? = ? ? = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = A = T = = = G A T C G T = C = A = D = = = A = A 4 T G = = T = A = = = T = = = = = = = = T = A = = = = = = (C) = A = = = T = = = 0 D037 = = = = = = = = = = = A ? ? = = = = = = = = G = = T = A C G = = = A G = G = = = G = = G = = = = = = = G = = C C = = C A I = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = C = ? ? ? = = = G A T C ? ? ? ? ? A = = = = ? A = = = = = = = = = = = = = = = = = C = = = = = ? ? ? ? ? ? ? G = = = A G = = = = = = = = = = = = = = = = G ? ? = = = = = = = = A = = C = G T A = = = G C = T = = = A = = T = = = = = = = A = = T T = = T G D = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = T = ? ? ? = = = C G C A ? ? ? ? ? G = = = = ? C = = = = = = = = = = = = = = = = = A = = = = = ? ? ? ? ? ? ? A = = = C A = = = = = 0 D038 = = = ? ? ? ? (G) = = = (G) (G) = = C T = A T = C A = G = = = = = = D A A = C G C = = = = = = C = C = G = = G = = = = = = C A = G = = = I = = T C D A C = = A T T T = = = G C = = = = = D = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? (C) = = = = (G) (C) = (T) (C) (A) = (C) (T) (D) (C) = (A) (A) (G) (C) = (A) = ? (C) = = = = = = (G) = = = = = ? ? ? ? (A) = = = (A) (C) = = T C = G C = T G = A = = = = = = I G G = T T G = = = = = = T = A = A = = A = = = = = = T G = C = = = D = = C G I G T = = G C G C = = = A A = = = = = I = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? (A) = = = = (A) (T) = (C) (T) (G) = (T) (C) (I) (A) = (G) (G) (C) (T) = (G) = ? (T) = = = = = = (A) = = 0 D039 = = = = (A) = = = = = = = = = = = = = = = = = = = = (T) = = (C) = = = = = = = = (C) (G) = (G) = = (G) = = (A) = (A) = = = = = (C) (C) = (T) = = (I) (C) = = = = (A) = = = = = = = = = = = = = = (T) = = = = = = = = = = = = C G A = T = T = G A T C G T = C = A = = = = = A = A 4 T G T = = C = = = C = = = = C = = = = = A A G C C A T ? ? = = A G = T ? ? ? = = = = (G) = = = = = = = = = = = = = = = = = = = = (C) = = (T) = = = = = = = = (G) (A) = (A) = = (T) = = (C) = (G) = = = = = (T) (T) = (G) = = (D) (G) = = = = (T) = = = = = = = = = = = = = = (G) = = = = = = = = = = = = T A G = G = C = C G C A A G = T = G = = = = = C = G 2 C T C = = T = = = T = = = = A = = = = = G G C T G G C ? ? = = C A = C ? ? ? 0 D040 = = = ? ? ? ? (G) = = (G) = = = (G) (C) (T) = (A) (T) ? (C) (A) = (G) = = = = = = (D) (A) (A) = (C) = (C) (G) = A = = T = (G) = = = = = = = A T T = = = = D G = = = = = = = = = = = = = = = = = C T = A = G = = = = = A C ? ? = = A = = = = ? = = = = = = = = = = = = = = = A = A 4 T G = A = = = = A = = C T G = T C I A = = = = = = = = = = ? ? = = = T ? ? ? = = = ? ? ? ? (A) = = (C) = = = (A) (T) (C) = (G) (C) ? (T) (G) = (A) = = = = = = (I) (G) (G) = (T) = (G) (A) = G = = G = (T) = = = = = = = C C C = = = = I C = = = = = = = = = = = = = = = = = T C = G = T = = = = = G G ? ? = = G = = = = ? = = = = = = = = = = = = = = = C = G 2 C T = C = = = = G = = T C A = C T D C = = = = = = = = = = ? ? = = = C ? ? ? 0 E001 = = = = = = = (G) = (T) = (G) = = = T C = G C ? T G = A = = = = = ? I G G = T = = = = = = = = = = = = = = = = = = = = = = = = = G = = = ? = = T = = = = = = = = T = = = = G C = = = = C D = = C I = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = (G) = (A) = = = C T = A T ? C A = G = = = = = ? D A A = C = = = = = = = = = = = = = = = = = = = = = = = = = C = = = ? = = C = = = = = = = = G = = = = A A = = = = T I = = T D = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E002 = T = = = = = G = T = G = A = = = = (A) = = = = = = = = = = = ? D = = = = = C G = = = = = C G = = = = = = = = = = = = = = = ? = = = ? = = T = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = G = = = = = C G 2 C T C = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = C = = = = = A = G = A = G = = = = (G) = = = = = = = = = = = ? I = = = = = G A = = = = = T T = = = = = = = = = = = = = = = ? = = = ? = = C = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = C = = = = = G A 4 T G T = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = 0 E003 = = = = = = = = T = = = = = = C T = A T = C A = G = = = = = = D A A = C = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = C = = = = = = = = G = = = = A A = = = = T I = = T D = = A = = = = C G A T C G T A C = A = = C = = A = G 2 C T C = = = = = = T = = = = = = = = = = G G C T = G = A ? A = = = = = A A G = = = = = = = = C = = = = = = T C = G C = T G = A = = = = = = I G G = T = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = T = = = = = = = = T = = = = G C = = = = C D = = C I = = G = = = = T C G C A A G G T = G = = A = = C = A 4 T G T = = = = = = C = = = = = = = = = = A A G C = A = G ? G = = = = = G G A 0 E004 = = = T = D I G T = G G = = G C T = A T = C A = G = = = = = = D A A = C = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = C = = = = = = = = G = = = = A A = = = = T I = = = D = = = = = ? ? = = = = = = = = = = = G = = = = = C G 2 C T C = = = = A = T = = = = = = = = = = G G C T = G = ? ? A = = = = = = A G = = = C = I D A C = C A = = A T C = G C = T G = A = = = = = = I G G = T = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = T = = = = = = = = T = = = = G C = = = = C D = = = I = = = = = ? ? = = = = = = = = = = = C = = = = = G A 4 T G T = = = = G = C = = = = = = = = = = A A G C = A = ? ? G = = = = = = G A 0 E005 = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = 0 E006 = T = = = = = G = T = G = = = = = = = = ? = = = = = = = = = ? D = = = = = C G = = = = = C G = = = = = = = = = = = = = = = = ? = = = = = T = = = = = = = = T = = = ? ? = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = A = G = A = = = = = = = = ? = = = = = = = = = ? I = = = = = G A = = = = = T T = = = = = = = = = = = = = = = = ? = = = = = C = = = = = = = = G = = = ? ? = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E007 = T = C = I I G ? ? G G = = G = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = G ? = = = = = T = = = = = = = = T = = = ? ? C = = = = C D = = C I = ? G = = = = T C G C A A G G T = ? = = A = = C = A 4 T G T = = = = = = C = = ? ? ? ? ? ? ? ? A A G C = A = G C G = = = = = G G A = C = T = D D A ? ? C A = = A = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = C ? = = = = = C = = = = = = = = G = = = ? ? A = = = = T I = = T D = ? A = = = = C G A T C G T A C = ? = = C = = A = G 2 C T C = = = = = = T = = ? ? ? ? ? ? ? ? G G C T = G = A T A = = = = = A A G 0 E008 = T = = = = = G = T = G ? ? = = = = = = ? = = = = = = = = = = D = = = = = C G = = = = = C G = = = = = = = = = = = = = = = = ? = ? = = = T = = = = = = = = T = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = C = = = = = G A 4 T G T = = = A = = = T = = = = = = = = T = A = = = = = G = G A = = = = = G A = C = = = = = A = G = A ? ? = = = = = = ? = = = = = = = = = = I = = = = = G A = = = = = T T = = = = = = = = = = = = = = = = ? = ? = = = C = = = = = = = = G = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = G = = = = = C G 2 C T C = = = C = = = C = = = = = = = = C = G = = = = = A = A G = = = = = A G 0 E009 = T = = = = = G (T) T = G = A = = = = = = = = = = = = = = = = ? D = = = = = C G = = = = = C G = = = = = = = = = = = = = = = = ? = = = = = T = = = = = = = = T = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = A (C) G = A = G = = = = = = = = = = = = = = = = ? I = = = = = G A = = = = = T T = = = = = = = = = = = = = = = = ? = = = = = C = = = = = = = = G = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E010 = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G C = = G = C D = = = I = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A A = = A = T I = = = D = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = C = = = = = = = = = 0 E011 = = = = = = = (G) = G = (G) = = = = = = = = = = = = = = = = = = = = = = = = = G A I = A C = = = A T A C G A T = = = I T = = = = G G = = = = = G I G T = = G C = C = = = = = G = = G C = = = = I = = = = = = = = = = = = = = = = = = C = = = = = G = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = T = (A) = = = = = = = = = = = = = = = = = = = = = = = = = C G D = G T = = = C G G G A G C = = = D G = = = = T T = = = = = C D A C = = A T = T = = = = = T = = A T = = = = D = = = = = = = = = = = = = = = = = = G = = = = = C = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E012 = (T) = = = = = (G) ? ? = = = = = (C) (T) = (A) (T) = (C) (A) = (G) = = = = = = (D) (A) (A) = (C) = = = = = = = ? ? = = = = = = = = = = = = = = = = = G = = = = = C = = = = = = = = = = = = = A A = = = = = I = = = D = = = = = ? ? = = = = = = = = = = = G = = = = = C G 2 C T C = = = C = = = C = = = = = ? = = C = G = = = = = A T A G = = = = = A G = (C) = = = = = (A) ? ? = = = = = (T) (C) = (G) (C) = (T) (G) = (A) = = = = = = (I) (G) (G) = (T) = = = = = = = ? ? = = = = = = = = = = = = = = = = = T = = = = = T = = = = = = = = = = = = = G C = = = = = D = = = I = = = = = ? ? = = = = = = = = = = = C = = = = = G A 4 T G T = = = A = = = T = = = = = ? = = T = A = = = = = G C G A = = = = = G A 0 E013 = = = (T) = (D) (I) (G) = = (G) (G) = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = T = = = = = = = = = = = = = G C = = = = = D = = ? ? = = = = = = = = = = = = = = = = = = C = = = = = G A 4 T G T = = = A = = = T = = = = = = = = T = A = = = = = G C G A = = = = = G A = = = (C) = (I) (D) (A) = = (C) (A) = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = C = = = = = = = = = = = = = A A = = = = = I = = ? ? = = = = = = = = = = = = = = = = = = G = = = = = C G 2 C T C = = = C = = = C = = = = = = = = C = G = = = = = A T A G = = = = = A G 0 E014 = = = (T) = (D) (I) (G) = = (G) (G) = = (G) = = = = = = = = = = = = = = = = = = = = = = G A I = A C = = = A T A C = A T = = = I T = = = = G = = = = = = G I G T = = G C = C = = = = = G C = G C = = = = I = = = = = = = = = = = = = = = = T = = = = = = = = (A) (4) (T) (G) (T) = = = = (G) = (C) = = = = = = = = = = (A) (A) (G) (C) = (A) = (G) (C) (G) = = = = = = (G) (A) = = = (C) = (I) (D) (A) = = (C) (A) = = (A) = = = = = = = = = = = = = = = = = = = = = = C G D = G T = = = C G G G = G C = = = D G = = = = T = = = = = = C D A C = = A T = T = = = = = T A = A T = = = = D = = = = = = = = = = = = = = = = C = = = = = = = = (G) (2) (C) (T) (C) = = = = (A) = (T) = = = = = = = = = = (G) (G) (C) (T) = (G) = (A) (T) (A) = = = = = = (A) (G) 0 E015 = = ? = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = D = G T = T = = G = G A = C = = = D = T G = ? = T = = = = C = = = = = = = = G = = = = A A ? = = = T I = = = D = = = = = = = = = = = = = = = = C = = = = = = = = A 4 T G T = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = ? = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = I = A C = C = = T = C G = T = = = I = C A = ? = G = = = = T = = = = = = = = T = = = = G C ? = = = C D = = = I = = = = = = = = = = = = = = = = T = = = = = = = = G 2 C T C = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = 0 E016 = T = = = ? ? G = T = G = = = = = = = = = = = = = = = = = = = D = = = = = = = = = = = = = G A = A = = A = = = = = T T G = C G = = = = = = G = = = = = = = = = = = = = = = C = G = = = = ? ? = ? = = = G = = = = = A = = = T T = G = = = = = C G 2 C T C = = = = A = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = ? ? A = G = A = = = = = = = = = = = = = = = = = = = I = = = = = = = = = = = = = T C = G = = G = = = = = G C A = G T = = = = = = C = = = = = = = = = = = = = = = A = A = = = = ? ? = ? = = = T = = = = = C = = = C C = C = = = = = G A 4 T G T = = = = G = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E017 = T = = = = = G ? ? = G = = = = = = = = ? = = = = = = = = = = D = = = = = C G = = = = = C G = = = = = = = = = = = = = = = C (T) = = ? = = = = = = = = = = = = = = = = A A = = = = T I = = = D = = = = = = = = = = = = = = = = = ? G = = = = = C G 2 C T C = = = = A = T = = = = = = = = = = G G C T = G = A T A = = = = = = A G = C = = = = = A ? ? = A = = = = = = = = ? = = = = = = = = = = I = = = = = G A = = = = = T T = = = = = = = = = = = = = = = G (G) = = ? = = = = = = = = = = = = = = = = G C = = = = C D = = = I = = = = = = = = = = = = = = = = = ? C = = = = = G A 4 T G T = = = = G = C = = = = = = = = = = A A G C = A = G C G = = = = = = G A 0 E018 = T = C = I D = = T C = = = A = = = = = = = = = = = = = = = ? D = = = = = C G = = = = = C G = = = = = = = = = = = = = = = = G = = = = = = = D A C = = A T T T = = = = = = = = G = = = = = = = = = = = G = = = = = A = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = T = D I = = G G = = = G = = = = = = = = = = = = = = = ? I = = = = = G A = = = = = T T = = = = = = = = = = = = = = = = T = = = = = = = I G T = = G C G C = = = = = = = = A = = = = = = = = = = = T = = = = = C = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E019 T = = T = D I G = (G) G G = = G C T = A ? ? C A = G = = = = = ? D A A = C = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = ? G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = C = I D A = (T) C A = = A T C = G ? ? T G = A = = = = = ? I G G = T = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = ? A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E020 (T) = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = ? ? ? ? ? ? ? = = = = = = = = = = = (G) = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = ? ? ? ? ? ? ? = = = = = = = = = = = 0 E021 = = = T = D I G = = G G = = G = = = = = = = = = = = = = = = = = = = = = = = = D = G T = T = = G = G A = C = = = D = T G = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = G = = = = T C G C ? A G G T = G G = A = = C C A 4 T G T = = = = = = C = = = = = = = = = = A A G C = A = G C G = = = = = G G A = = = C = I D A = = C A = = A = = = = = = = = = = = = = = = = = = = = = = = = I = A C = C = = T = C G = T = = = I = C A = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = A = = = = C G A T ? G T A C = A C = C = = A G G 2 C T C = = = = = = T = = = = = = = = = = G G C T = G = A T A = = = = = A A G 0 E022 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? D = = = = = C G = = = = = C G = = = = = = = = = = = = = = = ? ? = = = = = T = = = = = = = = T = = = = G C = = = = C D = = = I = = = = = = = = = = = = = = = = = = C = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? I = = = = = G A = = = = = T T = = = = = = = = = = = = = = = ? ? = = = = = C = = = = = = = = G = = = = A A = = = = T I = = = D = = = = = = = = = = = = = = = = = = G = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E023 = = ? (T) = (D) (I) (G) = = (G) (G) = = (G) = = = = = = = = = = = = = = = = = = = = = = G A = = = = = = = = = = = = = = = = = = T T G = ? (T) = = = = = = G I G T = = G C G C = = = = = G C = G = = = = = I = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = A A = T T = = = = = = = = T G G C T = G = = ? = A = = = = = = = = = ? (C) = (I) (D) (A) = = (C) (A) = = (A) = = = = = = = = = = = = = = = = = = = = = = C G = = = = = = = = = = = = = = = = = = G C A = ? (G) = = = = = = C D A C = = A T T T = = = = = T A = A = = = = = D = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = C G = C C = = = = = = = = C A A G C = A = = ? = G = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = = = = = = = 1.00 = = = = = = = ? ? = = = = = 1.00 = = = = = = = = = = 1.00 = ? = = = = 1.00 = 1.00 = 1.00 = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 1.00 = = ? = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 ? ? = = = 1.00 = = = = = = = = ? = = = = = = = = = = = = = ? 1.00 = = = = = ? ? ? ? ? = 1.00 1.00 1.00 = = = 1.00 = ? ? ? ? ? ? ? ? = 1.00 = = = = = = = = 1.00 = = = 1.00 = = = 0.72 = 0.67 = = 0.67 ? = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = = ? 1.00 1.00 = = = = = = = 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = 1.00 = = = = = = = 1.00 1.00 = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = ? = 1.00 = = = = = ? ? = 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 = 1.00 ? 1.00 ? ? 1.00 1.00 = = 1.00 ? ? = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 = 1.00 = 1.00 = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = ? 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 ? 1.00 = = = = = 1.00 1.00 1.00 0.99 = = 1.00 = 1.00 ? = = = 1.00 = = = 1.00 1.00 = = = 1.00 = 1.00 = = 1.00 1.00 = = 1.00 = = = 1.00 1.00 = = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = ? = = = = 1.00 = = = = = = 1.00 = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = = = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = 0.57 = 0.57 = = = 0.57 = = 0.57 = = 0.57 = ? 0.57 = = = 0.57 = = 0.57 = 0.56 = = 0.56 = = = = = = = 0.56 = = 0.56 0.56 = = = 0.55 0.56 0.56 = = = = 0.69 = = = = = = = = = = = = 1.00 1.00 = 1.00 = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = = 1.00 = = = 1.00 = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = 1.00 = 1.00 ? ? = = 1.00 1.00 = = = = = = = = = = 0.51 ? = = = = = 0.59 = = = = 0.59 = = 0.59 = 0.59 0.59 = 0.59 = 0.59 0.59 0.59 0.59 = = 0.59 0.59 = 0.59 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = ? 1.00 = = 1.00 = = 1.00 = = = = = = = ? = 1.00 = 1.00 ? ? = = 1.00 1.00 = = = = = 1.00 = = 1.00 = 1.00 ? 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = ? 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = ? = 1.00 = = 1.00 1.00 = = = = 1.00 = 1.00 = = = = 1.00 = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 ? = = 1.00 = = = = = = = = 1.00 ? ? ? ? ? ? ? = = 1.00 = = = = 1.00 = 1.00 1.00 0.51 = = 0.51 = 0.51 ? = = = 0.51 = = = 0.51 = 0.51 = 0.51 = ? = 0.51 = ? ? 1.00 = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = ? 1.00 = = = = = = = = ? ? = = 1.00 = ? 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 = = ? 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = 1.00 = = = 1.00 = = = = = = = = 1.00 ? ? ? ? ? = = = = = 1.00 = = = = = = = = = = = = = = = = = = 0.81 = = = = = = = = = = = = = = 0.82 = = = = = = = = = = = 0.85 = = = = = = = 1.00 = 1.00 = = = = 1.00 = = = 1.00 = = = = = ? ? 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 = = 1.00 = = = = = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = 1.00 = = = = = = = = = = = = 1.00 ? ? = = = = = 0.98 = = = = = = = 1.00 = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 1.00 = = = = = 1.00 = 1.00 = 1.00 = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 = 1.00 = = = = 1.00 ? ? ? ? = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 = ? ? ? ? ? = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = = = = 1.00 1.00 = ? = = = = = = = = = = = = = = = = = = 0.54 = = = 0.69 = = = 0.69 = = = ? ? = 0.76 = ? = 0.76 = = 0.76 = = 0.76 = = 0.76 ? ? ? 0.76 = = = 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = = = 1.00 = = 1.00 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.76 = 0.76 = = = = 0.76 = 0.76 0.76 = = = = = = = 0.96 = = = 0.96 0.96 = = = 0.96 0.96 0.96 = 0.96 = = 0.96 = = = 0.96 = 0.96 0.96 0.96 = 0.96 0.96 0.96 0.96 0.96 0.96 = 0.96 = = ? ? = = = = = = 0.96 = = 0.96 0.96 = = 0.96 0.96 0.96 = = = ? = 0.96 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = = = = 1.00 = = = = = = 1.00 = = = 1.00 1.00 = = = = = = 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = ? = 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = ? 1.00 = = = = = 1.00 = = = = = = = = = = 1.00 = = = 1.00 = = = = 1.00 = 1.00 = ? = 1.00 = ? ? = = 1.00 = = 1.00 = = = 1.00 = 1.00 1.00 = = = ? = = = = = = = = = = = = = = = = = = 1.00 ? = = = = = 1.00 = = = = = = = = 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = ? 1.00 = = = = = 1.00 = = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 = = = = = = 1.00 1.00 = = = = = = = = = = ? = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.56 = = = = = = 0.56 = = = = = = = = = = = ? = = = = = = = = = = = = = 0.90 0.90 = 0.90 = = 0.90 0.90 = = = = = = 0.90 = = 0.90 = = = 0.90 0.90 0.90 1.00 ? = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = = ? = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = ? = = = = = = = = = = = = 0.56 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = ? 1.00 = = = = = = = = ? = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = = ? ? 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 = = = = = 1.00 = = = = 1.00 = = 1.00 1.00 = = ? = = = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = ? ? = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 = = = = = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = ? = = = 1.00 = = = = 1.00 = = = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = ? 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 = 1.00 = 1.00 = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 = = = = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 = = = = = = 0.85 = = = = 0.85 = = 0.85 0.85 0.85 = 0.85 0.85 0.85 0.85 = = = = = = = = 0.85 = 0.85 = = = = = = 0.85 0.85 = = 0.85 1.00 = = 1.00 = = = 1.00 = ? ? = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = 1.00 = = = = = = = 1.00 = 1.00 = = = = 1.00 = = = 1.00 0.97 0.97 = = = = = 0.97 = = = 0.97 0.97 0.97 0.97 = = 0.97 0.97 = 0.97 = = = = 0.97 = = = = = = = = = = = 0.83 = = = = 0.83 = = = = = = = = = = = = = = = = = = 0.56 0.56 0.56 0.56 = 0.56 = = = = 0.56 = = 0.56 0.56 0.56 = 0.56 0.56 0.56 0.56 = = = = = = = = 0.56 = 0.56 = = = = = = 0.56 0.56 = = = ? = ? ? = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = = = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = = 0.77 = 1.00 = = = 1.00 = = = = = = = = = = = = = = 1.00 ? ? = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 = = = 1.00 = = 1.00 = = = = = = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = ? ? ? = = = 1.00 1.00 1.00 1.00 ? ? ? ? ? 1.00 = = = = ? 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = ? ? ? ? ? ? ? 1.00 = = = 1.00 1.00 = = = = = = = = ? ? ? ? 0.70 = = = 0.70 0.70 = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 = 1.00 = 1.00 = = 1.00 = = = = = = 1.00 1.00 = 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? 0.60 = = = = 0.60 0.60 = 0.60 0.60 0.60 = 0.60 0.60 0.60 0.60 = 0.60 0.60 0.60 0.60 = 0.60 = ? 0.60 = = = = = = 0.60 = = = = = = 0.51 = = = = = = = = = = = = = = = = = = = = 0.52 = = 0.52 = = = = = = = = 0.50 0.50 = 0.50 = = 0.50 = = 0.50 = 0.50 = = = = = 0.50 0.50 = 0.50 = = 0.50 0.50 = = = = 0.50 = = = = = = = = = = = = = = 0.61 = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = 1.00 = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 ? ? = = 1.00 1.00 = 1.00 ? ? ? = = = ? ? ? ? 0.60 = = 0.60 = = = 0.60 0.60 0.60 = 0.60 0.60 ? 0.60 0.60 = 0.60 = = = = = = 0.60 0.60 0.60 = 0.60 = 0.60 0.60 = 1.00 = = 1.00 = 0.60 = = = = = = = 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 = 1.00 = = = = = 1.00 1.00 ? ? = = 1.00 = = = = ? = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = = ? ? = = = 1.00 ? ? ? = = = = = = = 0.51 = 0.60 = 0.60 = = = 0.92 0.92 = 0.92 0.92 ? 0.92 0.92 = 0.92 = = = = = ? 0.92 0.92 0.92 = 0.92 = = = = = = = = = = = = = = = = = = = = = = = = = 0.96 = = = ? = = 0.96 = = = = = = = = 0.96 = = = = 0.96 0.96 = = = = 0.96 0.96 = = 0.96 0.96 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 = 1.00 = 1.00 = = = = 0.54 = = = = = = = = = = = ? 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = ? = = = ? = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.93 = 0.93 = = = = = 0.93 0.93 0.93 0.93 0.93 0.93 = = = = = = = = = = = = = = = = = = = = = = = = = 0.93 = = = = = = = = = = = = = = = = = 0.98 = = = = = = 0.98 0.98 = 0.98 0.98 = 0.98 0.98 = 0.98 = = = = = = 0.98 0.98 0.98 = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = 1.00 = = = = = = = = 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 = = 1.00 1.00 = = 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 ? 1.00 = = = = = 1.00 1.00 1.00 = = = 0.92 = 0.92 0.92 0.92 0.92 = 0.92 0.92 = = 0.92 0.92 0.92 = 0.92 0.92 = 0.92 0.92 = 0.92 = = = = = = 0.92 0.92 0.92 = 0.92 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = 1.00 = = = = = = = = 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 = = = 1.00 = = = = = ? ? = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = ? ? 1.00 = = = = = = 1.00 1.00 = = = = = = = = = = = = = 0.52 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 = 1.00 = = = = = = = = ? = = = = = = = = = ? 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = ? = = = = = 1.00 = = = = = = = = 1.00 = = = ? ? = = = 0.81 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 1.00 1.00 ? ? 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = 1.00 ? = = = = = 1.00 = = = = = = = = 1.00 = = = ? ? 1.00 = = = = 1.00 1.00 = = 1.00 1.00 = ? 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = ? = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = ? ? ? ? ? ? ? ? 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = = = = 1.00 = 1.00 = 1.00 ? ? = = = = = = ? = = = = = = = = = = 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = ? = ? = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 = = = = = 1.00 1.00 = 1.00 = = = = = 1.00 0.61 1.00 = 1.00 = 0.97 = = = = = = = = = = = = = = = = ? 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = ? = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = 0.74 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 0.80 = 0.92 = 0.80 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = = = 1.00 = = 1.00 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.55 = = = = = 0.57 ? ? = = = = = 0.87 0.87 = 0.87 0.87 = 0.87 0.87 = 0.87 = = = = = = 0.87 0.87 0.87 = 0.87 = = = = = = = ? ? = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = = = = = 1.00 = = = 1.00 = = = = = ? ? = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = = = = = ? = = 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = 0.60 = 0.60 0.60 0.60 = = 0.60 0.60 = = 0.60 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = = = = = 1.00 = = ? ? = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = = = = = = = = 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = 0.62 = 0.62 0.62 0.62 = = 0.62 0.62 = = 0.62 = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 1.00 = = = = 1.00 = = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = = = = = 1.00 1.00 = 1.00 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 0.69 0.69 0.69 0.69 0.69 = = = = 0.69 = 0.69 = = = = = = = = = = 0.69 0.69 0.69 0.69 = 0.69 = 0.69 0.69 0.69 = = = = = = 0.69 0.69 = = ? = = = = = = = = = = 0.93 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 = ? = 1.00 = = = = 1.00 = = = = = = = = 1.00 = = = = 1.00 1.00 ? = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = 0.99 = = = ? ? 0.99 = 0.99 = 0.99 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = 1.00 = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = 1.00 = 1.00 = = = = ? ? = ? = = = 1.00 = = = = = 1.00 = = = 1.00 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 ? ? = 1.00 = = = = = = = = ? = = = = = = = = = = 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = 1.00 0.82 = = ? = = = = = = = = = = = = = = = = 1.00 1.00 = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = ? 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = ? 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = = = = = 1.00 = = = = = = = = = = = 1.00 = = = = = 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 = 0.87 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 ? ? 1.00 1.00 = 1.00 = = = = = ? 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = ? 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.59 = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = ? ? ? ? ? ? ? = = = = = = = = = = = = = = 0.98 = 0.98 0.98 0.98 = = 0.98 0.98 = = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 = = = = 1.00 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = = = ? ? = = = = = 1.00 = = = = = = = = 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 0.60 = 0.60 0.60 0.60 = = 0.60 0.60 = = 0.60 = = = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = ? 0.88 = = = = = = 1.00 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = = 1.00 1.00 = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = ? = 1.00 = = = = = = = END PHASEPROBS