Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000099 C 0 1 1 T 20 7 27 000111 A 10 3 13 C 10 5 15 001033 T 3 15 18 C 45 31 76 001247 C 18 22 40 G 30 24 54 001400 A 1 0 1 G 47 44 91 001458 T 16 7 23 C 32 31 63 002190 T 16 24 40 C 30 22 52 002248 A 9 0 9 G 35 46 81 002918 C 9 6 15 G 39 40 79 005252 G 11 7 18 A 33 35 68 005561 C 0 6 6 T 30 34 64 006092 A 4 4 8 G 38 36 74 006152 T 3 0 3 C 39 40 79 006450 T 0 2 2 A 46 44 90 006456 T 9 2 11 C 37 42 79 006790 - 7 12 19 + 39 30 69 006845 G 21 14 35 T 25 28 53 007021 T 14 9 23 G 34 29 63 007086 A 1 0 1 G 47 42 89 009244 A 0 1 1 G 48 43 91 009314 C 22 17 39 T 26 29 55 009482 T 12 28 40 A 34 16 50 009554 C 1 5 6 T 45 37 82 009632 T 15 8 23 G 33 36 69 009696 C 0 1 1 T 48 43 91 009779 C 13 2 15 A 33 40 73 009800 A 0 3 3 G 46 41 87 010060 C 2 0 2 T 46 46 92 010127 G 2 0 2 A 44 46 90 010164 C 12 27 39 T 34 19 53 015028 G 3 4 7 A 37 34 71 015392 G 0 1 1 A 40 37 77 015691 T 1 0 1 C 43 42 85 015966 G 2 0 2 A 46 46 92 016703 T 0 3 3 C 48 41 89 016753 T 1 0 1 C 47 44 91 021225 G 8 2 10 C 38 42 80 021540 + 15 6 21 - 31 40 71 022061 G 12 13 25 A 22 15 37 022850 C 1 0 1 T 47 44 91 022911 G 0 1 1 A 48 45 93 023078 A 8 12 20 C 40 32 72 023109 T 6 4 10 A 42 40 82 026741 G 6 13 19 A 38 33 71 026805 A 1 3 4 G 45 43 88 026937 C 4 0 4 T 44 46 90 027043 G 2 0 2 C 46 46 92 027064 A 2 0 2 G 44 46 90 027138 C 3 0 3 T 37 36 73 027419 A 1 0 1 G 37 40 77 027615 T 8 0 8 G 38 46 84 028379 + 4 0 4 - 44 42 86 028389 A 4 5 9 G 42 41 83 028520 G 0 1 1 A 48 45 93 028823 - 8 7 15 + 34 39 73 031888 A 9 15 24 G 39 31 70 031961 + 13 7 20 - 33 39 72 032047 - 2 0 2 + 44 46 90 032181 C 6 4 10 T 38 42 80 033241 T 16 26 42 C 32 18 50 038873 - 1 0 1 + 47 46 93 039267 T 2 0 2 C 46 46 92 039426 G 1 0 1 A 47 40 87 039440 A 0 2 2 G 48 38 86 039534 G 0 1 1 A 48 43 91 039792 T 8 20 28 G 28 24 52 040059 + 7 4 11 - 35 42 77 040319 A 1 0 1 G 33 42 75 040528 A 12 6 18 C 22 34 56 041928 C 2 1 3 G 44 41 85 042046 A 2 0 2 G 42 42 84 042144 A 2 2 4 T 42 42 84 042389 A 3 2 5 G 43 44 87 042480 C 9 2 11 T 37 44 81 042850 T 20 16 36 C 28 30 58 043123 G 0 4 4 A 44 34 78 043536 - 1 0 1 + 35 40 75 053984 T 17 20 37 G 27 24 51 054005 G 2 0 2 T 42 44 86 054021 + 5 14 19 - 39 30 69 054058 G 18 19 37 A 28 23 51 054220 T 18 17 35 C 24 27 51 054231 T 11 16 27 C 29 26 55 054332 C 14 16 30 T 24 22 46 054402 T 7 13 20 G 33 25 58 054479 C 19 17 36 G 21 21 42 054498 T 3 2 5 C 37 38 75 054832 G 9 7 16 A 39 39 78 054859 C 9 7 16 T 39 39 78 054958 T 2 0 2 G 46 46 92 054984 T 9 7 16 C 39 39 78 055159 G 9 7 16 T 39 39 78 055289 G 1 0 1 A 47 46 93 055317 A 6 14 20 G 42 30 72 055352 C 8 7 15 T 40 37 77 055427 C 1 0 1 T 41 42 83 055743 T 2 0 2 G 42 42 84 055753 T 6 5 11 C 38 35 73 055756 + 9 6 15 - 37 32 69 055883 A 20 19 39 C 28 27 55 056153 - 0 6 6 + 48 40 88 056191 C 10 18 28 T 38 28 66 056311 C 0 1 1 A 48 45 93 056447 T 2 0 2 G 46 46 92 056522 G 1 0 1 A 47 46 93 056585 A 1 0 1 G 47 46 93 056920 A 0 3 3 G 48 43 91 056993 A 9 7 16 G 39 39 78 057035 G 2 0 2 A 46 46 92 057050 T 16 18 34 C 32 28 60 057106 T 0 1 1 C 48 45 93 057107 A 9 7 16 G 39 39 78 057114 G 3 2 5 A 45 44 89 057137 A 0 1 1 G 48 45 93 057156 C 9 7 16 T 39 39 78 057351 A 1 0 1 T 47 46 93 057361 G 0 1 1 C 48 45 93 057389 T 9 7 16 C 39 39 78 057410 A 0 9 9 G 48 37 85 057412 G 9 7 16 T 39 39 78 057444 A 1 0 1 G 47 46 93 057683 + 0 1 1 - 48 43 91 057701 G 0 1 1 A 48 43 91 057752 T 3 2 5 C 45 42 87 058142 G 8 6 14 A 36 36 72 058188 G 7 6 13 T 37 36 73 058437 T 2 2 4 C 44 40 84 058472 A 1 0 1 T 45 42 87 058590 G 9 7 16 A 39 37 76 058821 T 8 11 19 G 38 29 67 058824 T 7 1 8 C 39 35 74 059160 T 8 3 11 C 24 19 43 059185 A 6 1 7 G 30 31 61 059189 T 13 11 24 C 27 21 48 059317 T 1 0 1 C 41 42 83 059349 C 1 0 1 G 41 42 83 059403 A 0 1 1 G 44 41 85 059486 T 9 7 16 G 39 39 78 059497 G 1 0 1 T 47 46 93 059514 T 2 0 2 C 46 46 92 059562 C 0 1 1 T 48 45 93 059575 A 8 9 17 G 40 37 77 059837 T 11 9 20 A 37 37 74 059875 C 1 0 1 T 47 46 93 060265 G 1 1 2 T 47 45 92 060266 A 1 1 2 G 47 45 92 060433 C 14 14 28 G 32 30 62 060528 T 3 2 5 C 45 44 89 060638 G 8 7 15 A 38 39 77 060705 G 1 0 1 A 45 46 91 060870 A 9 7 16 G 39 39 78 060879 T 9 7 16 C 39 39 78 060949 G 1 0 1 C 47 46 93 060978 T 6 13 19 C 42 31 73 061017 G 1 0 1 C 47 46 93 061057 A 2 0 2 C 46 44 90 061123 A 9 7 16 G 39 39 78 061687 A 9 14 23 G 39 26 65 061857 A 11 5 16 G 37 37 74 061912 A 1 0 1 G 41 42 83 061914 T 21 12 33 C 21 14 35 062112 G 6 10 16 T 42 36 78 062144 - 11 4 15 + 31 28 59 062150 T 10 2 12 C 36 40 76 062297 A 12 13 25 G 36 33 69 062324 G 10 4 14 A 38 42 80 062407 T 24 16 40 C 24 30 54 062409 C 24 16 40 G 24 30 54 062410 A 10 4 14 C 38 42 80 062615 + 1 0 1 - 43 22 65 062855 C 2 0 2 T 46 42 88 062882 T 2 0 2 C 46 42 88 062946 T 12 5 17 C 36 39 75 063092 C 10 5 15 T 36 41 77 063127 T 2 2 4 C 44 42 86 063181 T 7 0 7 C 41 46 87 063191 C 7 0 7 T 41 46 87 063274 A 24 18 42 G 24 28 52 063459 + 2 0 2 - 42 44 86 063606 A 2 5 7 G 44 41 85 063682 C 11 5 16 T 35 41 76 063756 G 7 5 12 C 37 39 76 063938 T 2 0 2 C 44 44 88 063966 A 2 0 2 G 44 44 88 064448 T 12 12 24 C 36 26 62 064640 A 12 13 25 G 36 27 63 064693 T 2 0 2 C 46 44 90 064696 G 0 1 1 A 48 43 91 064771 C 0 1 1 T 48 43 91 065203 G 12 13 25 T 36 33 69 065335 C 11 12 23 T 37 24 61 065446 G 12 3 15 C 34 37 71 065565 C 24 17 41 T 24 25 49 065730 T 2 0 2 C 46 42 88 065777 C 10 4 14 G 38 38 76 065900 T 0 5 5 C 42 33 75 066062 T 7 0 7 G 41 44 85 066144 A 25 18 43 G 23 28 51 066151 A 2 0 2 G 46 46 92 066167 C 25 18 43 G 23 28 51 066740 T 8 8 16 A 40 38 78 066745 A 1 0 1 G 47 46 93 066947 A 24 19 43 G 24 27 51 067072 A 10 5 15 G 38 41 79 067163 T 7 0 7 C 41 46 87 067466 G 24 18 42 T 24 28 52 067517 C 10 5 15 T 38 41 79 067600 A 12 13 25 G 36 33 69 067690 T 1 0 1 G 47 46 93 067798 C 2 2 4 T 46 44 90 068222 A 1 0 1 G 47 46 93 068261 G 3 2 5 A 45 42 87 068315 T 0 2 2 C 48 44 92 068321 G 24 19 43 A 24 25 49 068456 C 10 5 15 T 38 35 73 068492 A 14 12 26 G 34 32 66 068516 T 7 0 7 C 41 46 87 068825 A 23 18 41 G 21 28 49 068955 G 10 5 15 A 38 41 79 069069 + 1 0 1 - 41 44 85 069455 T 20 16 36 G 24 26 50 069457 T 12 11 23 A 32 31 63 069766 C 8 5 13 G 36 37 73 069767 C 8 5 13 T 36 37 73 069912 G 21 18 39 A 21 28 49 070078 G 0 3 3 A 32 41 73 070293 A 10 5 15 G 36 39 75 070692 A 21 24 45 G 27 18 45 070817 T 0 1 1 C 46 37 83 071038 C 9 4 13 T 39 36 75 071182 A 8 6 14 T 40 36 76 071393 G 5 16 21 T 35 22 57 071503 C 1 1 2 G 39 37 76 071553 G 2 0 2 T 40 38 78 071689 G 24 14 38 A 22 26 48 072007 G 2 2 4 A 42 42 84 072271 C 2 0 2 G 42 46 88 072595 A 0 3 3 G 46 39 85 072645 G 10 4 14 A 36 34 70 072933 C 12 14 26 T 36 30 66 073085 T 6 8 14 C 40 34 74 073771 C 2 2 4 T 46 40 86 073780 G 10 4 14 T 38 36 74 074245 G 1 0 1 A 45 44 89 074554 T 3 2 5 C 45 44 89 074721 T 2 0 2 G 46 46 92 074995 G 0 1 1 T 48 45 93 075341 G 10 5 15 A 38 41 79 075966 T 7 5 12 A 41 41 82 076116 A 10 5 15 G 34 41 75 076182 T 10 4 14 G 36 40 76 076313 C 1 0 1 A 45 44 89 076377 - 0 1 1 + 44 43 87 076386 G 10 4 14 A 36 40 76 076441 - 7 5 12 + 37 39 76 076596 G 2 0 2 A 46 46 92 076599 + 0 3 3 - 46 41 87 076894 G 7 0 7 A 37 32 69 077014 G 19 11 30 A 25 21 46 077307 T 1 0 1 C 47 44 91 077516 A 0 1 1 G 48 43 91 077740 T 1 0 1 C 47 42 89 078143 T 1 0 1 C 45 46 91 078299 A 6 9 15 G 42 37 79 078745 C 1 0 1 T 47 38 85 079845 T 5 4 9 A 23 14 37 080157 A 1 0 1 C 33 28 61 080557 G 10 6 16 A 38 40 78 080559 T 1 0 1 G 47 46 93 080579 C 10 18 28 T 38 28 66 080580 A 0 2 2 G 48 44 92 080706 T 0 1 1 A 46 41 87 080839 G 1 1 2 A 45 39 84 081041 C 0 1 1 T 48 43 91 081241 G 1 0 1 T 45 40 85 081383 A 6 0 6 G 38 40 78 081397 C 1 0 1 T 45 40 85 082326 A 1 0 1 G 47 46 93 082451 G 10 5 15 A 36 41 77 082721 - 6 0 6 + 38 46 84 083004 - 10 5 15 + 34 41 75 083218 G 9 18 27 A 39 28 67 083253 C 2 0 2 A 44 46 90 083364 A 10 4 14 G 36 40 76 083416 C 10 4 14 T 38 40 78 083461 G 10 4 14 A 36 40 76 083475 C 7 4 11 G 39 40 79 083714 A 7 0 7 G 41 46 87 083801 + 7 5 12 - 41 39 80 083839 G 10 5 15 A 38 41 79 083860 A 5 8 13 G 43 38 81 083977 C 7 0 7 T 39 46 85 083986 G 1 9 10 A 45 37 82 084171 + 2 0 2 - 44 42 86 084227 T 3 1 4 C 43 41 84 084259 T 10 5 15 C 36 37 73 084524 G 0 1 1 A 42 33 75 084630 C 9 4 13 T 31 32 63 084747 A 5 9 14 T 37 29 66 084787 C 20 15 35 T 22 23 45 084796 C 9 4 13 T 33 34 67 085037 T 7 0 7 G 37 46 83 085447 C 10 5 15 A 36 31 67 085553 T 12 5 17 C 34 31 65 085627 C 10 5 15 T 36 31 67 085646 T 7 5 12 A 39 31 70 085675 T 10 5 15 C 36 35 71 085998 A 2 0 2 G 44 44 88 086003 A 11 13 24 T 35 31 66 086083 A 9 4 13 G 37 40 77 086576 T 7 5 12 C 41 41 82 086701 C 1 0 1 T 47 46 93 086745 A 0 1 1 G 48 45 93 086948 G 1 0 1 A 47 46 93 087158 T 0 1 1 C 48 45 93 087255 A 21 18 39 G 27 28 55 087513 C 9 5 14 G 39 37 76 087602 C 0 1 1 T 48 45 93 087713 G 1 0 1 A 47 44 91 087813 T 9 6 15 G 39 38 77 088025 A 3 0 3 G 43 42 85 088790 + 10 4 14 - 38 38 76 088889 C 5 0 5 T 39 44 83 089969 - 10 5 15 + 32 39 71 090029 - 1 0 1 + 47 42 89 090294 + 2 3 5 - 42 41 83 090319 A 13 12 25 G 35 32 67 090510 C 13 13 26 T 35 33 68 090777 T 2 2 4 C 46 44 90 090891 T 6 10 16 C 42 36 78 091169 C 19 12 31 T 27 34 61 091308 C 8 12 20 A 40 34 74 091533 G 1 1 2 T 47 45 92 091609 - 3 3 6 + 45 41 86 092280 A 0 1 1 C 46 45 91 092440 A 9 5 14 G 37 41 78 092463 G 9 5 14 A 37 41 78 092617 * 092638 C 2 0 2 T 46 46 92 092664 T 2 0 2 C 46 44 90 092679 A 5 6 11 C 41 38 79 093008 T 10 5 15 C 38 39 77 093200 A 9 5 14 G 39 41 80 093605 A 2 0 2 G 42 46 88 093901 A 10 5 15 G 38 41 79 093997 G 7 4 11 T 33 32 65 094262 A 2 5 7 T 38 31 69 094729 G 1 0 1 A 47 44 91 095376 A 14 12 26 G 34 34 68 095502 G 1 0 1 T 47 46 93 095517 T 5 8 13 C 43 38 81 095753 A 2 0 2 C 46 46 92 095754 T 3 2 5 C 45 44 89 095816 A 1 0 1 G 47 46 93 095933 - 14 10 24 + 34 26 60 096038 A 5 11 16 G 43 35 78 096101 A 24 17 41 G 24 29 53 096359 T 14 12 26 C 34 34 68 097707 - 7 5 12 + 39 35 74 097793 A 0 1 1 G 46 39 85 098006 T 5 7 12 A 43 39 82 098184 C 10 5 15 T 38 41 79 098204 C 10 5 15 G 38 41 79 098245 C 10 5 15 A 38 41 79 098247 G 7 0 7 C 41 46 87 098299 C 3 2 5 T 45 44 89 099016 C 6 4 10 T 24 40 64 099689 T 0 1 1 C 48 37 85 099738 C 9 4 13 T 39 34 73 099786 C 0 3 3 T 48 43 91 099831 T 10 5 15 A 38 41 79 099987 G 6 0 6 A 40 46 86 100008 T 10 5 15 C 36 41 77 100045 G 1 0 1 A 45 46 91 100148 T 5 0 5 C 35 44 79 100721 T 4 2 6 C 44 44 88 100801 G 20 17 37 C 28 29 57 100915 C 22 17 39 T 24 29 53 101070 A 3 2 5 G 41 38 79 101088 T 3 0 3 A 41 40 81 101325 G 8 5 13 A 36 35 71 101746 G 7 16 23 C 33 26 59 101843 G 1 0 1 T 43 46 89 102395 T 0 3 3 C 48 43 91 102889 C 2 0 2 A 44 46 90 103138 T 2 0 2 C 46 46 92 103314 T 10 5 15 C 36 41 77 103744 - 2 0 2 + 44 42 86 103973 C 1 0 1 A 43 44 87 103985 - 13 12 25 + 29 30 59 104194 G 2 0 2 A 46 46 92 104233 A 7 9 16 C 41 37 78 104271 + 7 5 12 - 35 39 74 104410 C 7 18 25 T 41 28 69 105140 G 1 0 1 C 47 44 91 105280 - 2 2 4 + 44 34 78 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 006790: AA 021540: TC 028379: A 028823: T 031961: AAAT 032047: A 038873: TAAAA 040059: ATAG 043536: AA 054021: A 055756: A 056153: AGTG 057683: C 062144: CCT 062615: C 063459: C 069069: T 076377: A 076441: T 076599: A 082721: T 083004: TT 083801: T 084171: A 088790: T 089969: AT 090029: CATAAT 090294: A 091609: TAAA 095933: T 097707: TG 103744: G 103985: AAC 104271: ATTT 105280: A Tri-allelic sites: Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop Allele3 AD-pop ED-pop Total-pop 092617 A 1 0 1 C 2 2 4 G 45 44 89