************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 ilk9r.phase.inp ilk9r.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST ilk9r.phase.out_freqs : haplotype frequency estimates ilk9r.phase.out_pairs : most likely haplotype pairs for each individual ilk9r.phase.out_recom : estimates of recombination parameters ilk9r.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 60 Positions of loci: 212 246 376 458 851 914 1263 1801 2584 2606 2676 2766 2786 2825 3148 3197 3294 3383 3677 3728 3816 3990 4544 4652 4690 4821 4944 5003 5048 5126 5167 5338 5479 5813 6301 7036 7296 7313 7433 8044 8243 8580 8928 9681 9867 10068 10171 10277 10299 10762 10925 10949 11121 13403 13412 13441 13638 13647 13656 15256 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file ilk9r.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CAGGTCTGGAACCAGAGCTGCACTTATGGGCIGGACCGGGCGCTCDGCDAGGGGTCAGTG 1.000000 2 CAGGTCTGGAACCAGAGCTGCACTTATGGGCIGGACCGGGCGCTCDGCDAAGGGTCAGTG 1.000000 3 CAGGTCTGGAACCAGAGCTGCACTTGTGGGCIGGACCGGGCGCTCDGCDAGGGTCCAGTG 3.000000 4 CAGGTCTGGAACCAGAGCTGCACTTGTGGGCIGGACCGGGAGCTCDGCDAGGGGTCAGTG 4.000000 5 CAGGTCTGGAACCAGAGCTGGACTTATGGGCIGGACCGGGAGCTCDGCDAGGGTCTGACG 1.000000 6 CAGGTCTGGAACCAGAGCTACACTTGTGGGCIGGACCGGGCGCTCDGCDAGGGGTCAGTG 1.000000 7 CAGGTCTGGAACCACACCTGGGCTCACGAATDGAGACTGGCGTTCDGGDAAGGGTCAGTG 1.000000 8 CAGGTCTGGAACTACAGCTGGACTTATCGGCIGGACCGGGCTCTCDGCDAGGGTTCAGTG 1.000000 9 CAGGTCTGGATCCAGAGCTGCACTTGTGGGCIGGACCGGGAGCTCDGCDAGGGGTCAGTG 2.000000 10 CAGGTCTGGATCTAGAGCTGCACTTATCGGCIGGACCGGGCTCTCDGCDAGGGGTCAGTG 2.000000 11 CAGGTCTGGGACCACACCTGCACTCATGGGTIGGAACGGGCGTCTDGCIAAGGGTCAGCG 1.000000 12 CAGGTCTGGGACCACACCTGCACTCATGGGTIGGAACGGGCGTCTDGCIAAGGGTCAGTG 1.000000 13 CAGGTCTGGGACCACACCTGCACTCATGGGTIGGAACGGGCGTCTDGCIAAGGGTTAGCG 1.000000 14 CAGGTCTGGGACCACACCTGCACTCATGGGTIGGAACGGGCGTCTDGCIAAGGGTTAGTG 4.000000 15 CAGGTCTGGGACCGCGCTCGGGCTTATGGGCIGGAACGGACGTTCDGCDAAGGTCTGACT 1.000000 16 CAGGTCTGCGACTAGAGCTGCACTTATCGGCIGGACCGGGCGCTCDGCDAGGGGTCAGTG 1.000000 17 CAAGTCTGGAACCACAGCTGCACTTATGGACIGGAACGGGCGTTCDGGDGACAGTCAGTG 1.000000 18 CAAGTCTGCGACCACACCTGGGCTCACGAATDGAGACTGACGTTCDGCDAAGGTTTGATG 1.000000 19 CAAGTCTGCGACCACACCTGGGCTCACGAATDGAGACTGACGTTCDGGDAAGGTCTGACT 1.000000 20 CAAGTCTGCGACCACACCTGGGCTCACGAATDGAGACTGACGTTCDGGDAAGGTCTGGCT 1.000000 21 CAAGCCTGGGACCACGCCTGCACTCATGGGTIGGAACGGGCGTTCDAGDAGCGTCTGACG 1.000000 22 CAAGCCTTGGACCACACCTGCACTCATGGGTIGGAACGGGCGTCCDAGDAAGGTCTGACT 1.000000 23 CAAGCCTTGGACCGCGCCCGGGCTTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACT 1.000000 24 CAAGCCTTGGACCGCGCTCGGGCTTATGGACIGGAATGGGCGTTCDGGDAAGGTCTGACT 1.000000 25 CAAGCCTTGGACCGCGCTCGGGCTTATGGACIGGAATGGGCGTTCDAGDAAGGTCTGACT 5.000000 26 CAAGCCTTGGACCGCGCTCGGGCTTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACG 1.000000 27 CAAGCCTTGGACCGCGCTCGGGCTTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACT 7.000000 28 CAAGCCTTGGACCGCGCTCGGGCCTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACT 3.000000 29 CAAGCCTTGGACCGCGCTCGGGCCTATGGACITGAATGGGCGTTCDAGDAAGGTCTGATG 2.000000 30 CAAGCCTTGGACCGCGCTCAGGCTTATGGACITGAACGGGCGTTCDAGDAAGGGTCAGTG 1.000000 31 CAAGCCTTGGACCGCGCTCAGGCTTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACG 2.000000 32 CAAGCCTTGGACCGCGCTCAGGCTTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACT 1.000000 33 CAAGCCTTGGACCGCGCTCAGGTTTATGGACITGAATGGGCGTTCDGCDAAGGTCTGACT 1.000000 34 CAAGCCTTGGACCGCGCTCAGGTTTATGGACITGAATGGGCGTTCDGGDAAGGTCTGACT 4.000000 35 CAAGCCTTGGACCGCGCTCAGGTTTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACG 5.000000 36 CAAGCCTTGGACCGCGCTCAGGTTTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACT 2.000000 37 CAAGCCTTGGAACGCGCCCGGGCTTATGGACITGAATGGGCGTTCDGGDAAGGTCTGACG 1.000000 38 CAAGCCTTGGAACGCGCTCGGGCTTATGGACITGAATGGGCGTTCDGGDAAGGTCTGACT 3.000000 39 CAAGCCTTGGAACGCGCTCGGGCTTATGGACITGAATGGGCGTTCDGGDAAGGTTTGACT 1.000000 40 CAAGCCTTGGTCCGCGCTCGGGCCTATGGACITGAATGGGCGTTCDGGDAAGGTCTGACT 1.000000 41 CAAGCCTTGGTCCGCGCTCGGGCCTATGGACITGAATGGGCGTTCDAGDAAGGTCTGACT 1.000000 42 CAAGCTTGGGACCGCGCTCGGGCTTATGGACIGGAATGGGCGTTCDAGDAAGGTCTGACT 1.000000 43 CAAGCTTTGGACCGCGCTCGGGCTTATGGACIGGAATGGGCGTTCDAGDAAGGTCTGACG 1.000000 44 CAAGCTTTGGACCGCGCTCGGGCTTATGGACIGGAATGGGCGTTCDAGDAAGGTCTGACT 2.000000 45 CAAGCTTTGGACCGCGCTCGGGCTTATGGACIGGAATGGGCGTTCIAGDAAGGTCTGACT 1.000000 46 TGGATCTGGGACCGCGCTCGGGCTTATGGGCIGGAACGGACGTTCDGCDAAGGTCTGACT 1.000000 47 TGGACCTTGAACCACACCTGCGCTTACGGATITGAACGGGCGTTCDGGDAAGGTTTGACT 1.000000 48 TGGACCTTGAACCACACCTGGGCTCACGAATDGAGACTAGCGTTCDGGDGAGAGTCAGTG 2.000000 49 TGGACCTTGAACCACACCTGGGCTCACGAATDGAGACTAGCGTTCIGGDGACAGTCAGTG 3.000000 50 TGGACCTTGAACCACACCTGGGCTCACGAATDGAGACTAGCGTTCIGGDGACAGTCGGTG 1.000000 51 TGGACCTTGATCCAGAGCTGCACTTGTGGGCIGGACCGGGAGTTCDGCDAAGGTTTAATG 1.000000 52 TGGACCTTGATCCGCGCCCGGGCTTATGGGCIGGAACGGGCGTTCDAGDAAGGTCTGACT 1.000000 53 TGGACCTTGGTCCGCGCTCGGGCTTATGGGCIGGAACGGACGTTCDGCDAAGGTCTGACT 1.000000 54 TGGACCATGAACCACACCTGCGCTCATGGGTIGGAACGGACGTTCDGGDAAGGTCTGACT 1.000000 55 TGGACCATGAACCACACCTGGGCTCATGGACIGGAATGGGCGTTCDGGDAAGGTCTGACT 2.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (3,10) D002: (17,42) D003: (27,45) D004: (28,49) D005: (18,48) D006: (7,51) D007: (1,4) D008: (20,43) D009: (9,54) D010: (25,55) D011: (2,14) D012: (24,47) D013: (50,52) D014: (30,46) D015: (44,49) D016: (16,49) D033: (8,15) D034: (5,39) D035: (19,44) D036: (25,29) D037: (10,48) D038: (4,9) D039: (53,55) D040: (4,4) E001: (14,38) E002: (14,38) E003: (3,35) E004: (3,36) E005: (26,27) E006: (25,35) E007: (25,27) E008: (27,36) E009: (27,41) E010: (31,38) E011: (27,31) E012: (12,25) E013: (21,34) E014: (28,34) E015: (27,34) E016: (11,28) E017: (35,40) E018: (13,37) E019: (6,32) E020: (34,35) E021: (23,29) E022: (14,22) E023: (33,35) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 C A G G T C T G G A A C C A G A G C T G C A C T T G T G G G C I G G A C C G G G C G C T C D G C D A G G G [T] C C A G T G C A G G T C T G G A T C T A G A G C T G C A C T T A T C G G C I G [G] A C C G G G C T C T C D G C D A G G G G T C A G T G 0 D002 C A A G (T) (C) T G G (A) A C C (A) C (A) (G) (C) (T) G (C) (A) C T T A T G G A C I G G A A (C) G G G C G [T] T C D G G D G A C A G T C A G T G C A A G (C) (T) T G G (G) A C C (G) C (G) (C) (T) (C) G (G) (G) C T T A T G G A C I G G A A (T) G G G C G T T C D A G D A A G G T C T G A C T 0 D003 C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C (D) A G D A A G G T C T G A C T C A A G C T T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C (I) A G D A A G G T C T G A C T 0 D004 C A A G C C T T G G A C C G C G C T C G G G C C T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T T G G A C C T T G A A C C A C A C C T G G G C T C A C G A A T D G A G A C T A G C G T T C I G G D G A C A G T C A G T G 0 D005 C A A G T C T G C G A C C A C A C C T G G G C T C A C G A A T D G A G A C T G A C G T T C D G C D A A G G T T T G A T G T G G A C C T T G A A C C A C A C C T G G G C T C A C G A A T D G A G A C T A G C G T T C D G G D G A G A G T C A G T G 0 D006 C A G G T C T G G A A C C A C A C C T G G G C T C A C G A A T D G A G A C T G G C G T T C D G G D A A G G G T C A G T G T G G A C C T T G A T C C A G A G C T G C A C T T G T G G G C I G G A C C G G G A G T T C D G C D A A G G T T T A A T G 0 D007 C A G G T C T G G A A C C A G A G C T G C A C T T A T G G G C I G G A C C G G G C G C T C D G C D A G G G G T C A G T G C A G G T C T G G A A C C A G A G C T G C A C T T G T G G G C I G G A C C G G G A G C T C D G C D A G G G G T C A G T G 0 D008 C A A G T (C) T G C G A C C A C A C C T G G G C T C A C G A A T D G A G A C T G A C G T T C D G G D A A G G T C T G (G) C (T) C A A G C (T) T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C D A G D A A G G T C T G (A) C (G) 0 D009 C A G G T C T G G A T C C A G A G C T G C A C T T G T G G G C I G G A C C G G G A G C T C D G C D A G G G G T C A G T G T G G A C C A T G A A C C A C A C C T G C G C T C A T G G G T I G G A A C G G A C G T T C D G G D A A G G T C T G A C T 0 D010 C A A G C [C] T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C D A G D A A G G T C T G A C T T G G A C C A T G A A C C A C A C C T G G G C T C A T G G A C I G G A A T G G G C G T T C D G G D A A G G T C T G A C T 0 D011 C A G G T C T G G A A C C A G A G C T G C A C T T A T G G G C I G G A C C G G G C G C T C D G [C] D A A G G G T C A G T G C A G G T C T G G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C T D G C I A A G G G T T A G T G 0 D012 C A A G C C T T G G A C C G C G C T C G G G C T T A (T) G G A (C) I (G) G A A (T) G G G C G T T C D G G D A A G G T (C) T G A C T T G G A C C T T G A A C C A C A C C T G C G C T T A (C) G G A (T) I (T) G A A (C) G G G C G T T C D G G D A A G G T (T) T G A C T 0 D013 T G G A C C T T G A A C C A C A C C T G G G C T C A C G A A T D G A G A C T A G C G T T C I G G D G A C A G T C G G T G T G G A C C T T G A T C C G C G C C C G G G C T T A T G G G C I G G A A C G G G C G T T C D A G D A A G G T C T G A C T 0 D014 C A A G C C T T G G A C C G C G C T C A G G C T T A T G G A C I T G A A C G G G C G T T C D A G D A A G G (G) (T) (C) (A) (G) (T) (G) T G G A T C T G G G A C C G C G C T C G G G C T T A T G G G C I G G A A C G G A C G T T C D G C D A A G G (T) (C) (T) (G) (A) (C) (T) 0 D015 C A A G C T T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C D A G D A A G G T C T G A C T T G G A C C T T G A A C C A C A C C T G G G C T C A C G A A T D G A G A C T A G C G T T C I G G D G A C A G T C A G T G 0 D016 C A G G T C T G C G A C T A G A G C T G C A C T T A T C G G C I G G A C C G G G C G C T C D G C D A G G G G T C A G T G T G G A C C T T G A A C C A C A C C T G G G C T C A C G A A T D G A G A C T A G C G T T C I G G D G A C A G T C A G T G 0 D033 C A G G T C T G G A A C T A C A G C T G G A C T T A T C G G C I G [G] A C C G G G C T C T C D G C D A G G G T T C A G T G C A G G T C T G G G A C C G C G C T C G G G C T T A T G G G C I G G A A C G G A C G T T C D G C D A A G G T C T G A C T 0 D034 C A G G T C T G G A A C C A G A G C T G G A C T T A T G G G C I G G A C C G G G A G C T C D G C D A G G G T C T G A C G C A A G C C T T G G A A C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D G G D A A G G T T T G A C T 0 D035 C A A G T (C) T G C G A C C A C A C C T G G G C T C A C G A A T D G A G A C T G A C G T T C D G G D A A G G T C T G A C T C A A G C (T) T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C D A G D A A G G T C T G A C T 0 D036 C A A G C C T T G G A C C G C G C T C G G G C (T) T A T G G A C I (G) G A A T G G G C G T T C D A G D A A G G T C T G A C (T) C A A G C C T T G G A C C G C G C T C G G G C (C) T A T G G A C I (T) G A A T G G G C G T T C D A G D A A G G [T] C [T] [G] A [T] (G) 0 D037 C A G G T C T G G A T C T A G A G C T G C A C T T A T C G G C I G [G] A C C G G G C T C T C D G C D A G G G G T C A G T G T G G A C C T T G A A C C A C A C C T G G G C T C A C G A A T D G A G A C T A G C G T T C D G G D G A G A G T C A G T G 0 D038 C A G G T C T G G A A C C A G A G C T G C A C T T G T G G G C I G G A C C G G G A G C T C D G C D A G G G G T C A G T G C A G G T C T G G A T C C A G A G C T G C A C T T G T G G G C I G G A C C G G G A G C T C D G C D A G G G G T C A G T G 0 D039 T G G A C C T T G G T C C G C G C T C G G G C T T A T G G G C I G G A A C G G A C G T T C D G C D A A G G T C T G A C T T G G A C C A T G A A C C A C A C C T G G G C T C A T G G A C I G G A A T G G G C G T T C D G G D A A G G T C T G A C T 0 D040 C A G G T C T G G A A C C A G A G C T G C A C T T G T G G G C I G G A C C G G G A G C T C D G C D A G G G G T C A G T G C A G G T C T G G A A C C A G A G C T G C A C T T G T G G G C I G G A C C G G G A G C T C D G C D A G G G G T C A G T G 0 E001 C A G G T C T G G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C T D G C I A A G G G T [T] A G [T] G C A A G C C T T G G A A C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D G G D A A G G T C T G A C [T] 0 E002 C A G G T C T G G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C T D G C I A A G G G T T A G T G C A A G C C T T G G A A C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D G G D A A G G T C T G A C T 0 E003 C A G G T C T G G A A C C A G A G C T G C A C T T G T G G G C I G G A C C G G G C G C T C D G C D A G G G T C (C) (A) (G) (T) G C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C (T) (G) (A) (C) [G] 0 E004 C A G G T C T G G A A C C A G A G C T G C A C T T G T G G G C I G G A C C G G G C G C T C D G C D A G G G [T] C C A [G] [T] (G) C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C (T) 0 E005 C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C G C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T 0 E006 C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C D A G D A A G G T C T G A C (T) C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C (G) 0 E007 C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C D A G D A A G G T C T G A C T C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T 0 E008 C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T 0 E009 C A A G C C T T G G (A) C C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T C A A G C C T T G G (T) C C G C G C T C G G G C C T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T 0 E010 C A A G C C T T G G A C C G C G C T C A G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C (G) C A A G C C T T G G A A C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D G G D A A G G T C T G A C (T) 0 E011 C A A G C C T T G G A C C G C G C T C (G) G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C T C A A G C C T T G G A C C G C G C T C (A) G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C G 0 E012 C A G G T C T G G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C T D G C I A A G G (G) (T) (C) (A) (G) (T) (G) C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I G G A A T G G G C G T T C D A G D A A G G (T) (C) (T) (G) (A) (C) (T) 0 E013 C A A G C C T G G G A C C A C G C C T G C A C T C A T G G G T I G G A A C G G G C G T T C D (A) G D A (G) (C) G T C T G A C (G) C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D (G) G D A (A) (G) G T C T G A C (T) 0 E014 C A A G C C T T G G A C C G C G C T C G G G C C T A T G G A C I T G A A T G G G C G T T C D (A) G D A A G G T C T G A C [T] C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D (G) G D A A G G T C T G A C [T] 0 E015 C A A G C C T T G G A C C G C G C T C G G G C T T A T G G A C I T G A A T G G G C G T T C D (A) G D A A G G T C T G A C T C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D (G) G D A A G G T C T G A C T 0 E016 C A G G T C T G G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C T D G C I A A G G G T (C) A G C G C A A G C C T T G G A C C G C G C T C G G G C C T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C (T) G A C T 0 E017 C A A G C C T T G G A C C G C G C T C A G G [T] T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C (G) C A A G C C T T G G T C C G C G C T C G G G C C T A T G G A C I T G A A T G G G C G T T C D G G D A A G G T C T G A C (T) 0 E018 C A G G T C T G G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C T D G C I A A G G G T T A G C G C A A G C C T T G G A A C G C G C C C G G G C T T A T G G A C I T G A A T G G G C G T T C D G G D A A G G T C T G A C G 0 E019 C A G G T C T G G A A C C A G A G C T A C A C T T G T G G G C I G G A C C G G G C G C T C D G C D A G G G (G) (T) (C) (A) (G) (T) (G) C A A G C C T T G G A C C G C G C T C A G G C T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G (T) (C) (T) (G) (A) (C) (T) 0 E020 C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D (G) G D A A G G T C T G A C T C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D (A) G D A A G G T C T G A C G 0 E021 C A A G C C T T G G A C C G C G C (C) C G G G C (T) T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C (T) C A A G C C T T G G A C C G C G C (T) C G G G C (C) T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A T (G) 0 E022 C A (G) G (T) C T (G) G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C T D G C I A A G G G T T A G T G C A (A) G (C) C T (T) G G A C C A C A C C T G C A C T C A T G G G T I G G A A C G G G C G T C C D A G D A A G G T C T G A C T 0 E023 C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D G C D A A G G T C T G A C (T) C A A G C C T T G G A C C G C G C T C A G G T T T A T G G A C I T G A A T G G G C G T T C D A G D A A G G T C T G A C (G) END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = = = = = = = = = = A = C = = = = = = = = = = = = G = G = = = = = ? ? = = = = = = G = = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = T = T = = = = = = = = = = = = A = C = = = = = ? ? = = = = = = T = = = = = = = = = = = ? ? ? ? ? ? = 0 D002 = = = = (T) (C) = = = (A) = = = (A) = (A) (G) (C) (T) = (C) (A) = = = = = = = = = = = = = = (C) = = = = = ? = = = G = = G = C A G T C A G T G = = = = (C) (T) = = = (G) = = = (G) = (G) (C) (T) (C) = (G) (G) = = = = = = = = = = = = = = (T) = = = = = ? = = = A = = A = G G T C T G A C T 0 D003 = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = T ? = = = = = = = = = = = (D) = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = G ? = = = = = = = = = = = (I) = = = = = = = = = = = = = = 0 D004 C A A G = = = = = G = = = G = G = T C = = = = C T = T = G = C I T ? ? = T G G = = = = ? = D A = = A = G G T C T G A C T T G G A = = = = = A = = = A = A = C T = = = = T C = C = A = T D G ? ? = C T A = = = = ? = I G = = G = C A G T C A G T G 0 D005 C A A G T = = G C G = = = = = = = = = = = = = = = = = = = = = = = = = = = = G A = = = ? = = = C = A = = G T = T G A = = T G G A C = = T G A = = = = = = = = = = = = = = = = = = = = = = = = = = = = A G = = = ? = = = G = G = = A G = C A G = = 0 D006 C A = G T = = G = = A = = = C = C = = = G G = = C A C = A A T D = A G A = T = = C = = = ? ? = G = = = = = G = C = G = = T G = A C = = T = = T = = = G = G = = = C A = = T G T = G G C I = G A C = G = = A = = = ? ? = C = = = = = T = T = A = = 0 D007 = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = C = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = A = = = = = = ? ? = = = = = = = = = = = 0 D008 = = = = T (C) = G C = = = = A = A = C T = = = = = C = C = A = T D = A G = C T = A = = = = = = G = = = = = = = = = = (G) = (T) = = = = C (T) = T G = = = = G = G = T C = = = = = T = T = G = C I = G A = T G = G = = = = = = A = = = = = = = = = = (A) = (G) 0 D009 C A = G T ? T G = = T = = = G = G = = = = A = = T G = = = = C = = = = C = = = G A = C = = = = C = = G = = ? ? ? ? ? ? G T G = A C ? A T = = A = = = C = C = = = = G = = C A = = = = T = = = = A = = = A C = T = = = = G = = A = = ? ? ? ? ? ? T 0 D010 C A A G ? ? T = = G = = = G = G = T C = = = = = T = = = = = = = = = = = ? ? ? = = = = = = = A ? ? = ? ? ? = = = = = = = T G G A ? ? A = = A = = = A = A = C T = = = = = C = = = = = = = = = = = ? ? ? = = = = = = = G ? ? = ? ? ? = = = = = = = 0 D011 = = = = = = = = = A = = = = G = G = = = = = = = T = = = = = C = = = = C = = = = = = C T C = = ? D = = = = = = C = = = = = = = = = = = = = G = = = = C = C = = = = = = = C = = = = = T = = = = A = = = = = = T C T = = ? I = = = = = = T = = = = 0 D012 C A A G = = = ? = G = = = G = G = T C = G = = = = = (T) = = = (C) = (G) = = = (T) = = = = = = = = = = = = = = = = = (C) = = = = = T G G A = = = ? = A = = = A = A = C T = C = = = = = (C) = = = (T) = (T) = = = (C) = = = = = = = = = = = = = = = = = (T) = = = = = 0 D013 = = = = = = = = = = A = = A = A = = T = = = = = C = C = A A T D = A G = = T A = = = = = = I G = = G = C A G T C = G T G = = = = = = = = = = T = = G = G = = C = = = = = T = T = G G C I = G A = = G G = = = = = = D A = = A = G G T C T = A C T 0 D014 C A A G C ? = T = = = = = = = = = = = A = = = = = = = = = A = = T = = = = = = G = = = = = = A G = = = = = (G) (T) (C) (A) (G) (T) (G) T G G A T ? = G = = = = = = = = = = = G = = = = = = = = = G = = G = = = = = = A = = = = = = G C = = = = = (T) (C) (T) (G) (A) (C) (T) 0 D015 C A A G = T = = = G = = = G = G = T C = = = = = T = T = G = C I = G A = T G G = = = = = = D A = = A = G G T C T G A C T T G G A = C = = = A = = = A = A = C T = = = = = C = C = A = T D = A G = C T A = = = = = = I G = = G = C A G T C A G T G 0 D016 C A = G ? ? = G C G = = T = G = G = = = C A = = T = T C G G C I = G ? ? = G G = = = C = = D = C = A G G G = = = = = = = T G = A ? ? = T G A = = C = C = C = = = G G = = C = C G A A T D = A ? ? = T A = = = T = = I = G = G A C A = = = = = = = 0 D033 = = = = = = = = = A = = T A = A G C T = = A ? = = = = C = = = = ? ? = C = = = G = T C = = = = = = = G = = = T C A G T G = = = = = = = = = G = = C G = G C T C = = G ? = = = = G = = = = ? ? = A = = = A = G T = = = = = = = A = = = C T G A C T 0 D034 = = G = T = = G = A = C = A G A G C T = = A ? ? = = = = = G = = G ? = ? C = = = A = C = = = = C = = G = = = C = ? ? ? G = = A = C = = T = G = A = G C G C T C = = G ? ? = = = = = A = = T ? = ? T = = = C = T = = = = G = = A = = = T = ? ? ? T 0 D035 = = = = T (C) = G C = = = = A = A = ? T = = = = = C = C = A = T D = ? G = C T = A = = = = = = G = = = = = = = = = = = = = = = = = C (T) = T G = = = = G = G = ? C = = = = = T = T = G = C I = ? A = T G = G = = = = = = A = = = = = = = = = = = = = 0 D036 = = = = = = = = = = ? = = = = = = = = = = = = (T) = = = = = = = = (G) = ? ? = = = = = = = = = = = = = = = = = ? ? ? ? ? ? (T) = = = = = = = = = = ? = = = = = = = = = = = = (C) = = = = = = = = (T) = ? ? = = = = = = = = = = = = = = = = = ? ? ? ? ? ? (G) 0 D037 C A = G T = = G = = T = T = G = G = = = C ? = = T = T C G G C I = ? ? C ? ? G = = T C = = = = C = A G = G = = = = = = = T G = A C = = T = = A = C = C = C = = = G ? = = C = C G A A T D = ? ? A ? ? A = = G T = = = = G = G A = A = = = = = = = 0 D038 = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = 0 D039 = = = = ? ? T = = G T = = G = G = T C = = = = = T = = = = G = = = = = ? ? ? = A = = = ? = = = ? ? = = = = = = = = = = = = = = = ? ? A = = A A = = A = A = C T = = = = = C = = = = A = = = = = ? ? ? = G = = = ? = = = ? ? = = = = = = = = = = = 0 D040 = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = 0 E001 = = G = ? ? = G = = = C = A = A = C T = C A = = C = = = = G T = G = = = C = = = = = = C T = = ? I = = = ? ? ? ? ? ? ? ? = = A = ? ? = T = = = A = G = G = T C = G G = = T = = = = A C = T = = = T = = = = = = T C = = ? D = = = ? ? ? ? ? ? ? ? 0 E002 = = G = T = = G = = = C = A = A = C T = C A = = C = = = = G T = G = = = C = = = = = = C T = = ? I = = = = G T = A G T G = = A = C = = T = = = A = G = G = T C = G G = = T = = = = A C = T = = = T = = = = = = T C = = ? D = = = = T C = G A C T 0 E003 = = G = T = = G = A = = = A G A G C T G C A C = = G = = = G = = G = = C C = = = = = C = = = G C = = G = = = = (C) (A) (G) (T) ? = = A = C = = T = G = = = G C G C T C A G G T = = A = = = A = = T = = A T = = = = = T = = = A G = = A = = = = (T) (G) (A) (C) ? 0 E004 = = G = T = = G = A = = = A G A G C T G C A C = = G = = = G = = G = = C C = = = = = C = = = G C = = G = = ? ? ? ? ? ? (G) = = A = C = = T = G = = = G C G C T C A G G T = = A = = = A = = T = = A T = = = = = T = = = A G = = A = = ? ? ? ? ? ? (T) 0 E005 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T 0 E006 = = = = = = = = = = = = = = = = = = = G = = C = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = A = = T = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = (G) 0 E007 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E008 = = = = = = = = = = = = = = = = = = = G = ? C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = ? T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E009 = = = = = = = = = = (A) = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E010 = = = = = = = = = = = C = = = = = = = A = = = = = = = = = = = = = = = = ? ? = = = ? = = = = A = = = = = = = = = = = = (G) = = = = = = = = = = = A = = = = = = = G = = = = = = = = = = = = = = = = ? ? = = = ? = = = = G = = = = = = = = = = = = (T) 0 E011 = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G 0 E012 = = G = ? = = G = = = = = A = A = C T = C A = = C = = = = G T = = = ? = C = = = = = = C T = G ? I = = = = (G) (T) (C) (A) (G) (T) (G) = = A = ? = = T = = = = = G = G = T C = G G = = T = = = = A C = = = ? = T = = = = = = T C = A ? D = = = = (T) (C) (T) (G) (A) (C) (T) 0 E013 = = = = = = = G = = = = = A = = = ? T G C A C = C = = = = G T = G = = ? C = = = = = = = = = (A) = = = (G) (C) = = = = = = = (G) = = = = = = = T = = = = = G = = = ? C A G G T = T = = = = A C = T = = ? T = = = = = = = = = (G) = = = (A) (G) = = = = = = = (T) 0 E014 = = = = = = = = = = = = = = = = = = = G = = C C = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = A = = T T = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = ? 0 E015 = = = = = = = = = = = = = = = = = = = G = = C = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = T = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = 0 E016 = = G = T = = G = = = = = A = A = C T = C A = T C = = = = G T = G = = = C = = = = = = C T = G C I = = = = G T (C) A G = G = = A = C = = T = = = = = G = G = T C = G G = C T = = = = A C = T = = = T = = = = = = T C = A G D = = = = T C (T) G A = T 0 E017 = = = = = = ? = = = A = = = = = = = = A = = ? T = = = = ? ? ? ? ? ? = = = = = = = = = = = = A = = = = = = = = = = = = (G) = = = = = = ? = = = T = = = = = = = = G = = ? C = = = = ? ? ? ? ? ? = = = = = = = = = = = = G = = = = = = = = = = = = (T) 0 E018 = = G = T = = G = = = C = A = A = = T = C A ? ? ? ? = = = G T = G ? = ? C = = = = = = C T = = ? I = = = = G T = A G = = = = A = C = = T = = = A = G = G = = C = G G ? ? ? ? = = = A C = T ? = ? T = = = = = = T C = = ? D = = = = T C = G A = = 0 E019 = = G = T = = G = A = = = A G A G ? T = C A = = = G = = = G = = G ? ? C C = = = = = C = = = G C = = G = = (G) (T) (C) (A) (G) (T) (G) = = A = C = = T = G = = = G C G C ? C = G G = = = A = = = A = = T ? ? A T = = = = = T = = = A G = = A = = (T) (C) (T) (G) (A) (C) (T) 0 E020 = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = (G) = = = = = = = = = = = = T = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = (A) = = = = = = = = = = = = G 0 E021 = = = = = = = = = = = = = = = = = (C) = = = = ? (T) = = = = = = = = = ? = = = = = = = ? = = = = = = = = = = = = = = = = C (T) = = = = = = = = = = = = = = = = = (T) = = = = ? (C) = = = = = = = = = ? = = = = = = = ? = = = = = = = = = = = = = = = = T (G) 0 E022 = = (G) = (T) = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = G ? I = = = = G T = A G T G = = (A) = (C) = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = A ? D = = = = T C = G A C T 0 E023 = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = ? = = G C = = = = = = = = = = = (T) = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = ? = = A G = = = = = = = = = = = (G) END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = 1.00 = 1.00 = = = = = ? ? = = = = = = 1.00 = = = = = = = = = = = ? ? ? ? ? ? = = = = = 0.56 0.63 = = = 0.65 = = = 0.65 = 0.65 0.65 0.65 0.65 = 0.65 0.65 = = = = = = = = = = = = = = 0.72 = = = = = ? = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = 0.99 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.98 ? = = = = = = = = = = = 0.52 = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = = = = = 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 ? ? = 1.00 1.00 1.00 = = = = ? = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 0.99 1.00 0.94 = = 0.95 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = ? = = = 1.00 = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 = = 1.00 = = 1.00 = = = 1.00 = 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 = = = ? ? = 1.00 = = = = = 1.00 = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.94 = = = = = = = = = = = = = = 1.00 = = = = = = ? ? = = = = = = = = = = = = = = = 0.91 0.86 = 0.91 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = 1.00 = = = = = = = = = = 0.54 = 0.52 1.00 1.00 = 1.00 1.00 ? 1.00 1.00 = = 0.92 = = = 1.00 = 1.00 = = = = 0.95 = = 1.00 1.00 = = = = 1.00 = = = = 1.00 = = = 1.00 1.00 = 1.00 = = = = 1.00 = = 1.00 = = ? ? ? ? ? ? 1.00 1.00 1.00 1.00 1.00 ? ? 1.00 = = 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = = = = = 1.00 = = = = = = = = = = = ? ? ? = = = = = = = 1.00 ? ? = ? ? ? = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = 1.00 = = = = = = = 1.00 = = = = = 1.00 = = = = 1.00 = = = = = = 1.00 1.00 1.00 = = ? 1.00 = = = = = = 1.00 = = = = 1.00 1.00 1.00 1.00 = = = ? = 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = = = 0.63 = = = 0.50 = 0.52 = = = 0.51 = = = = = = = = = = = = = = = = = 0.61 = = = = = = = = = = = = = = = 0.99 = = 1.00 = 1.00 = = 1.00 = = = = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 0.96 0.96 0.96 0.96 0.95 ? = 0.95 = = = = = = = = = = = 0.98 = = = = = = = = = 0.98 = = 0.98 = = = = = = 0.98 = = = = = = 0.98 0.98 = = = = = 0.69 0.69 0.69 0.69 0.69 0.69 0.69 1.00 1.00 1.00 1.00 = 0.98 = = = 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 ? ? = 1.00 0.97 0.97 = = 1.00 = 1.00 = 1.00 = = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 ? ? = 1.00 1.00 = = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 ? = = = = 1.00 = = = = ? ? = 1.00 = = = 1.00 = 1.00 1.00 = = = = = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 = 1.00 = 0.96 = 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 ? ? = = = = = 1.00 = = 1.00 ? = ? 1.00 = = = 1.00 = 1.00 = = = = 1.00 = = 1.00 = = = 1.00 = ? ? ? 1.00 = = = = 0.91 0.87 = 0.91 1.00 = = = = 1.00 = 1.00 = ? 1.00 = = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = ? 1.00 = 1.00 1.00 = 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = 0.87 = = = = = = = = 0.87 = ? ? = = = = = = = = = = = = = = = = = ? ? ? ? ? ? 0.73 1.00 1.00 = 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = 1.00 = 1.00 = = = 1.00 ? = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = ? ? 1.00 ? ? 1.00 = = 1.00 1.00 = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = ? ? 1.00 = = 1.00 0.94 = = 1.00 = 1.00 = 1.00 1.00 = = = = = 1.00 = = = = 1.00 = = = = = ? ? ? = 1.00 = = = ? = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = ? ? = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = 1.00 1.00 = = ? 1.00 = = = ? ? ? ? ? ? ? ? = = 1.00 = 1.00 = = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = 1.00 1.00 = = ? 1.00 = = = = 1.00 1.00 = 1.00 1.00 1.00 0.98 = = 1.00 = 1.00 = = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = 1.00 = = 1.00 = = 1.00 1.00 = = = = = 1.00 = = = 1.00 1.00 = = 1.00 = = = = 0.88 0.88 0.88 0.88 ? = = 1.00 = 1.00 = = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = 1.00 = = 1.00 = = 1.00 1.00 = = = = = 1.00 = = = 1.00 1.00 = = 1.00 = = ? ? ? ? ? ? 0.86 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = 0.87 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = ? 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.83 = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = 1.00 = = = = = = = = = = = = = = = = ? ? = = = ? = = = = 1.00 = = = = = = = = = = = = 0.76 = = = = = = = = = = = = = = = = = = = 0.69 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = ? = = 1.00 = = = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 = = = = 1.00 1.00 = = = ? = 1.00 = = = = = = 1.00 1.00 = 1.00 ? 1.00 = = = = 0.86 0.86 0.86 0.86 0.86 0.86 0.86 = = = = = = = 0.94 = = = = = 1.00 = = = ? 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 = = ? 1.00 = = = = = = = = = 0.82 = = = 0.70 0.83 = = = = = = = 0.58 = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = 0.87 = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = 0.89 = = = = = = = = = = = = = = = 1.00 = 1.00 = = 1.00 = = = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = 1.00 = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 0.74 1.00 1.00 = 1.00 = = = = = = ? = = = 1.00 = = = = = = = = 1.00 = = ? 1.00 = = = = ? ? ? ? ? ? = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 0.81 = = 1.00 = 1.00 = = 1.00 = = = 0.97 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 ? ? ? ? = = = 1.00 1.00 = 1.00 ? = ? 1.00 = = = = = = 1.00 1.00 = = ? 1.00 = = = = 1.00 1.00 = 1.00 1.00 = = = = 1.00 = 1.00 = = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 ? 1.00 = 1.00 1.00 = = = 1.00 = = = 1.00 = = 1.00 ? ? 1.00 1.00 = = = = = 1.00 = = = 1.00 1.00 = = 1.00 = = 0.83 0.83 0.83 0.83 0.83 0.83 0.83 = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = 0.84 = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = 0.59 = = = = ? 0.59 = = = = = = = = = ? = = = = = = = ? = = = = = = = = = = = = = = = = 1.00 0.87 = = 0.50 = 0.50 = = 0.50 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 ? 1.00 = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = ? = = 0.97 1.00 = = = = = = = = = = = 0.89 END PHASEPROBS