IL9 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
AAGAAAAATN NTCTTTGTAA TATAAAACCG CCAGTGTTAG TGTTGCCATT
50
GCTGTAATTC TCTTGTCCAT TTCTTCAT
A
G TTATAATATT GCTGCTGAAG
100 |
var(79):[C:0.04]
CTCCTGCCAT CACACCCAAA TTGGAATTAA GGGGAAAGAC AGGGTTCAGC
150
CACTTTTGTC TCC
T
ATTACC AGGAAAGCAA AATAATTTTA CATACTTTGC
200 |
var(164):[-:0.07]
ATTGATC
G
AA ACATGCTGCA TGGCTACA
T
G TAGCAGCAAA AGAGGCTGAA
250 |
var(208):[A:0.02]
|
var(229):[G:0.01]
AATGTGGGTG TTTGGCTGGA TACATTGGTA CCCCAAACTA ATCAGAATTC
300
TACCATCAAG AAAAAGGCAT ACATCCAGTG CTTTGTAACA AAAGTGTTTG
350
CCACAGGCTG GGAATCCTTT GAGTTTTCTC TTCAGTGTCT GCAAAGAGCA
400
GGGATGGAAG TCAGAGATGT GGGATGGCTT AAGGGAATTT AGCAAAA
C
AC
450 |
var(448):[T:0.11]
CTGTTTCTCT TTACCTTGTT TACCACCAAG ACACTCCCTT CCCCATAGTG
500
CAGTGGAACA CTGACGAGCC ATCATCACTC CTAAGAAACA ATACAAAATG
550
AAAAAAAAAC AGTATTGCCA TACTCTTACA GTGGAGGCGA GGAAATCTTA
600
TGAGTTTGTC CCCACTGGCT ATTATAGTTC AGAGTGCTAA GCTAAAGAAC
650
CCCTCACCTT TTCAATCTAC TGTGTAGAAG CTATATTTAC TTACCTGCAC
700
ATACCTCCAA ATATGTATCC TAGAAATCAG ATTTGAAATC TTATAAATCC
750
CAGAAGTAGG AAGTTCGTAT TTCAAGAACT ACTTTTCAAA TTAGTGTT
T
T
800 |
REPEAT
A
A
T
T
C
A
A
C
A
A
G
C
A
T
T
T
A
G
T
G
A
G
T
G
C
C
C
A
C
A
G
T
T
C
C
C
C
A
G
G
C
A
C
C
T
C
C
T
T
A
850
A
G
T
G
C
T
G
A
G
A
A
T
A
T
A
G
G
G
G
T
G
A
A
C
T
G
G
A
C
C
C
A
T
A
A
A
G
C
C
C
T
G
G
A
G
T
A
T
A
T
900
A
T
C
C
T
G
G
T
G
G
G
A
G
A
G
G
C
A
G
A
T
A
A
A
AGATCT GCAGAAAAA
C
AGGAGTTCAG
950 |
var(940):[T:0.01]
GAG
G
A
T
T
A
A
G
A
G
C
T
G
A
A
A
T
C
A
G
G
A
G
G
C
A
G
A
C
T
T
C
T
G
G
G
C
T
T
G
A
A
T
A
C
A
A
A
1000 |
REPEAT
T
T
C
T
G
C
G
G
C
T
T
C
C
T
G
G
C
T
T
T
G
T
G
G
T
T
T
T
G
G
G
C
A
A
A
T
T
A
C
C
T
G
C
C
T
C
T
C
T
A
1050 |
var(1007):[A:0.01]
T
G
C
C
T
C
A
G
T
T
T
C
T
C
C
A
T
C
T
G
T
A
A
G
A
T
A
A
T
A
A
G
A
A
T
A
A
T
T
A
T
A
G
T
A
C
T
T
C
A
1100
T
A
G
A
G
T
T
ACA CTGAGATTGC TTTTTTGACT CATAGTGATT AAACACAGCC
1150
ATACTGAAGG GCCAGGAAGC TAAGATGTAG ACAGTGTTTT AAAGGGTAA
A
1200 |
REPEAT
A
A
A
T
G
G
T
G
A
T
G
A
C
A
A
A
T
T
A
C
T
C
C
C
C
A
C
C
T
C
A
T
T
T
G
G
C
A
G
C
C
G
A
G
T
G
T
A
T
T
1250 |
var(1245):[C:0.22]
A
C
A
T
G
G
C
T
T
A
A
T
G
C
A
T
G
T
A
A
A
G
T
A
C
T
T
A
G
A
A
A
T
G
T
T
G
C
T
A
G
T
A
T
G
G
T
C
A
G
1300 |
REPEAT
G
C
C
C
A
G
T
G
G
C
T
C
A
T
G
C
C
T
G
T
A
A
T
C
C
C
A
G
A
A
C
T
T
T
G
G
G
A
G
G
C
C
A
A
G
G
C
G
G
G
1350 |
var(1303):[A:0.01]
|
var(1314):[C:0.02]
|
var(1324):[T:0.01]
C
G
G
A
T
C
A
C
G
A
G
G
T
C
A
G
G
A
G
T
T
C
A
A
G
A
C
C
A
G
C
C
T
G
G
C
C
A
A
C
A
T
A
G
T
G
A
A
A
C
1400 |
var(1386):[T:0.01]
C
T
C
G
T
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
A
T
T
A
G
C
C
G
G
G
C
G
T
G
G
T
G
G
A
G
G
G
T
G
C
1450
C
T
G
T
A
A
T
T
C
T
A
G
C
T
A
C
T
C
G
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
C
G
C
T
T
G
A
A
C
C
C
1500
G
G
G
A
G
G
C
A
G
A
G
G
T
T
G
C
A
G
C
G
A
A
C
C
T
G
G
A
T
T
G
T
G
C
C
A
C
C
G
C
A
C
T
C
C
A
G
C
C
T
1550 |
var(1539):[A:0.01]
G
G
T
G
A
C
A
G
A
G
G
G
A
G
A
C
T
C
T
G
T
C
T
C
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
G
A
A
A
T
1600 |
REPEAT
G
T
T
A
C
T
A
G
T
A
T
G
T
A
G
T
A
A
G
T
T
C
T
C
A
G
T
A
A
A
T
G
T
T
A
G
C
T
A
C
T
A
T
ACTCTTT
1650
CAAGTGCTGG GTTTTTACTT GATGTCATAC AGTGTTATAT AAGATCTCCA
1700
AAGATACTGA GGAGTCCTCA AGGCCAATTT TAACAAGCAT GGTTGCCGCA
1750
TTCTTGTGCT TATAGTTGAA CATTTCTTCT TTCAGACACT TGCACAAAGG
1800
GATACTTCTA AGATGCATTT GCATTAGGTG GCAAACTTCA TCCTGGGTAT
1850
GAAAAACATT GAGATTTGGG AATAAAGCAT AGTAAGACTG AGGTTGCAAT
1900
TACTAAAGGA AAACCCCAAC AGAGATAAGT GAAGTTCTGC AATATCATGC
1950
ACCCTCCCCC AACCCGCTCT GTCTCCCCAG GCCCCCCTTC GTTAGAACAC
2000
CCATGACTGG CTATATTATA TCAGCATTTC CCATAATGTA AAAAGGGA
A
A
2050 |
var(2049):[G:0.07]
ATACAGACCT GGGCGTTCAT GGAAAGTATT CTAACTCTCA CAACCAGAAT
2100
CCCTGTCTTT GAATTTTTTT TCTTGGTTTT TAGATCTTTA ACTTTTCCTT
2150
CAGCATTTCA GTACTCAACT TTTTGAAAAT CATCTTTTCT GAGGAATGAT
2200
ATTTCCTGGC ACAGCATCAT CTCTGTCAAG TGACTCAGTT TGATTTTTTT
2250
GTTTGTTAGT ATAAAGTGGC CCCAACTTAC AGAGAAAAAG TGGGCTCTTG
2300
GTATCAGTTT GATGTCAGGG TTTTTCCGTG TTTGAGAGGG AGCTTTAAAT
2350
ACCACTCGAT TTGAAGGTGT CTGCAAGCGA GCTCCAGT
C
C
G
C
T
G
T
C
A
A
G
A
2400 | Exon 1 |
UTR
T
G
C
T
T
C
T
G
G
C
C
A
T
G
G
T
C
C
T
T
A
C
C
T
C
T
G
C
C
C
T
G
C
T
C
C
T
G
T
G
C
T
C
C
G
T
G
G
C
A
2450
M L L A M V L T S A L L L C S V A 17
G
G
C
C
A
G
G
G
G
T
G
T
C
C
A
A
C
C
T
T
G
G
C
G
G
G
G
A
T
C
C
T
G
G
A
C
A
T
C
A
A
C
T
T
C
C
T
C
A
T
2500
G Q G C P T L A G I L D I N F L I 34
C
A
A
C
A
A
G
A
T
G
C
A
G
GTAGGCT GCAGGGGGAG CCCATGGGAA AGACAGCTAC
2550
N K M Q 38
TGACAAAGTG AAATATGTAT GAGGATGAAA AAACTCGGGG CTGACTAAAG
2600
GTTCTTATCT CTCTATCTAC TTTAG
G
A
A
G
A
T
C
C
A
G
C
T
T
C
C
A
A
G
T
G
C
C
A
C
T
2650 | Exon 2
E D P A S K C H 46
G
C
A
G
T
G
C
T
A
A
T
GTGAGTGAA TGCTCTTTAA GAACTTTCCA AATTAATTTT
2700
C S A N 50
AATTTTCAC
A
TCTGGAATCT TCACTCTGAA ATTTCCCTTG CAG
G
T
G
A
C
C
A
2750 |
var(2710):[G:0.04]
| Exon 3
V T 52
G
T
T
G
T
C
T
C
T
G
T
T
T
G
G
G
C
A
T
T
C
C
C
T
C
T
GTAA GTATAGTGAA ATAACATAAT
2800
S C L C L G I P S 61
GTTGACCTTG GATTTTTTTG GTTTGTT
T
TT AAGTAAAAAT AAGTTGCTTT
2850 |
var(2828):[A:0.02]
ATTTAATATT TAATGTTATA CATTGTTGCT TAATTTAATT GTTACAGATT
2900
AGTATTCCCT GTTAAAACCA CATTGTTACA AATTATTCCC TTTTAAAACT
2950
A
C
GATCTTGA AATCCTATAT TATGAACATT TCTTTGTATT TAATTAACTT
3000 |
var(2952):[T:0.02]
TATGCCTCTT GAGAAGTTTG AACACTTTTC AACATTAAAA AAAGAATCCT
3050
GAATATCTTT TTAGATAGGT GGCCATGTGC ACAATTAAAT AAAACTGGAA
3100
CTAAGGATAT AATAATTGCT GTAGCTCATA TCATATTGCT TTCTAACTCA
3150
TTTACTGATA ACTCTAGAGT TGTGAAACAA TGTAAATAAA ATGACAACTC
3200
CTTATCTTTC ATCTGTCATG AATGATCTAT GCGCTATACC TCCCCCTCCC
3250
TGCCTCCTCC CTTCCTCCCC ACCACCCTGT TGTCTGTCTA GCTGATTAGA
3300
GTGACTGTTG GTTTGAATGC TGCCCTCTGG GCAGGTAGAG GATCTGAGGT
3350
TGTGAGTGGA AGGAGGGCTT CCAGAGGGCC ACTGCCCACT A
C
GGCAGGAA
3400 |
var(3392):[T:0.18]
GGATGGGTGG CAGGAAAGTT CTGATTCCTA ATTCAAACTC CTGGTTAGGG
3450
TGAGGAGGAG GCACTTCTCC AAGGTGCAGT GCTTTATTCT TTCTCATGCA
3500
AGGCCTGGGA GAATCTGAAG AATCTGAGCT TCTTGCCCTG GCTAGGGTAA
3550
GACATCGCAC CCATCGCGGT CCATCCATTA GATGAGAAGA GGATAGAGTG
3600
CCTTCTGGGC AG
G
AACCAGG CAGACAGCAC AGCCCCTGTC CCTTGGAGTA
3650 |
var(3613):[T:0.01]
C
A
GTCCATGT TTTTAGCTGC TGCTGAAATA CCAGCTGCAT TCAATTGTCA
3700 |
var(3652):[C:0.32]
CATCCCATTA GCTGGTGTGA AAAGGCTTTT CCTCACTCTG CACTTTCAGA
3750
CTTACAAGCC TTGAAGCCGG GAAGCACCC
G
TTGAAAAGAA CATTCAGAGC
3800 |
var(3780):[A:0.02]
CGACTATTTC AGGGCCCA
G
A GCCCTCATGT TTCCTGGATG TAACATACAG
3850 |
var(3819):[C:0.18]
GAAGTCTCCT CCAGGGGATG TCACTGTGGA AAAATGGCAT CCCCTTTAAA
3900
TACGGGAGAT CACTTCCTAC ATTG
G
CAAGG GACCTGTCTA AAAATAATGC
3950 |
var(3925):[A:0.01]
AAGTTTGAGT AATG
G
TGATT AAATAAAAAT CATCTCTATT ATATTGCTCT
4000 |
var(3965):[T:0.02]
TTGTGATATA TTTCCAAAGC TGTCCTCAGA ATATTTCTTT GAATAAATCC
4050
TTACTATTTA CCAG
G
A
C
A
A
C
T
G
C
A
C
C
A
G
A
C
C
A
T
G
C
T
T
C
A
G
T
G
A
G
A
G
A
C
T
G
4100 | Exon 4
D N C T R P C F S E R L 73
T
C
T
C
A
G
A
T
G
A
C
C
A
A
T
A
C
C
A
C
C
A
T
G
C
A
A
A
C
A
A
G
A
T
A
C
C
C
A
C
T
G
A
T
T
T
T
C
A
G
4150
S Q M T N T T M Q T R Y P L I F S 90
T
C
G
G
G
T
G
A
A
A
A
A
A
T
C
A
G
T
T
G
A
A
G
T
A
C
T
A
A
A
G
A
A
C
A
A
C
A
A
G
T
G
T
C
C
A
GTAA
4200
R V K K S V E V L K N N K C P 105
GTTTGTTTTC ATATGTGATA TGTTCCTGTT GGTGATTTCT ATGTGAATGG
4250
TGATGCCAAC CCTGTTTGAA C
A
CAAAAGGA TGATAAAGTT GGAATTGGTA
4300 |
var(4272):[G:0.25]
GTTCAAGGTT GATAAAAGAC ATCTAAGAAT TTTAATCAGA AGTAATATAA
4350
TTAAAGTGAG ATCCACTGAA ACAATAGAAT TAAAGTGAGA TAGATCATTG
4400
TTCCTGACGA GGCCATTTAC TTCTCTCTAC TATGGAATAA TGAAAGAATC
4450
CTTTCTGAGT GTAATTAGAA GCTACAATCT AGAGAATCAG GGATGTAGCT
4500
CACATAATAC TAAATTATCC TAGAGATTCA ATGTACTAAC TGAATGGATG
4550
TTGTTAACAG GGATTTTTTT TTCCTGTTGG TTAAGGAGG
T
T
T
T
G
T
T
T
T
G
T
4600 |
REPEAT
T
T
T
G
G
A
G
A
C
A
G
A
G
T
C
T
T
G
C
T
C
T
G
T
T
G
C
C
C
A
G
G
C
T
G
G
A
G
T
G
C
A
G
T
G
G
T
G
C
C
4650
A
T
C
T
G
A
G
C
T
C
A
C
T
G
C
A
G
C
C
T
C
T
G
C
C
T
C
C
C
G
G
G
T
T
C
A
A
G
T
G
A
T
T
A
T
C
C
T
G
C
4700
C
T
C
A
G
C
C
T
C
C
C
G
A
G
T
A
G
C
T
G
G
C
A
T
T
A
C
A
G
G
T
G
C
G
T
G
C
C
A
C
C
A
T
G
C
C
T
G
G
C
4750
T
A
A
T
T
T
T
T
G
T
A
T
T
T
T
T
A
A
T
A
G
A
G
A
T
G
G
G
G
T
T
T
C
A
C
C
A
T
G
T
T
G
G
C
C
A
G
G
T
T
4800
G
C
T
C
T
C
C
A
A
C
T
C
C
T
G
A
A
C
T
C
A
A
G
T
G
A
T
T
T
G
C
C
C
G
C
C
T
T
G
A
C
C
T
C
C
C
A
A
A
G
4850
T
G
C
T
G
G
G
A
T
G
A
C
A
G
G
T
G
T
G
A
G
C
C
A
C
C
A
T
G
C
C
T
G
G
C
C
TGCA TTAAGGAGGT
4900
ATTTAAAGGG CAATGCACCC AGGTCAAGGT GGAAGCTTGC TACTCATCCT
4950
GAATGCCCAT CCACACATTC TTTTCTTCAG CATATACCCT AGT
C
CCTGAC
5000 |
var(4994):[T:0.01]
AGCAGACTGG GATGGCAAGT TGGGTAGAGG TGACCTCCCT CTGTTTTTTG
5050
GGTATTAGCA TCTCCACACA AGATCCTAGA AGGCTGAAAG CCCTGAGCTC
5100
AGCTGTTTAG CTGCATGCGT TTCTACCATC AATGGCATCT AGTTCTAAGT
5150
GCTTAATA
T
A TGCTGTCTCA CTGAATAAAT ACATACCTTA GGGACAATTA
5200 |
var(5159):[C:0.01]
TTCAATTTAT TACTCT
C
A
G
T
G
A
G
G
T
T
A
A
C
T
A
A
T
T
T
G
C
C
T
A
A
G
G
C
T
G
C
A
T
A
5250 |
REPEAT
T
T
T
G
A
T
A
A
G
T
G
G
C
A
G
A
G
C
T
G
A
G
A
T
T
T
G
A
A
C
T
C
A
G
G
C
C
T
A
T
A
T
G
A
C
C
T
C
A
G
5300 |
var(5282):[G:0.02]
A
G
C
C
C
C
A
C
T
C
T
T
A
G
C
C
A
T
T
G
T
A
C
T
G
T
CAAA TGACCTTGGA AAGACAACCT
5350
AAAAGGATAA TGATACAATT TTAGGCCTCA AAGAGTCCCC AGAAAAGGCT
5400
TTCTCTAATG CAGAGATTTA GGGCCACTTA ATAGGGGTGT GTGTGTGTGT
5450
GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT AAAGACCCCT GAAATCCAAT
5500
TTGAGGTCAA CCAC
C
TATGC TGTCTTTACA CCACATGAGC TAGCCTGGAC
5550 |
var(5515):[A:0.12]
CTGCCCACCT ATTTGCTCTG TGTCTCAAGC CACTTCCCTT CCCATCCCCA
5600
CAATCCTCAC CACCGACTCT GGCTCTTGGC AGGTAGGCTT CTGGGGCTGC
5650
TTGGCTCTAC ATCATTTGAG TCACTCTGTC CTTATCAACT TTCATCCCCA
5700
CAG
T
A
T
T
T
T
T
C
C
T
G
T
G
A
A
C
A
G
C
C
A
T
G
C
A
A
C
C
A
A
A
C
C
A
C
G
G
C
A
G
G
C
A
A
C
G
C
5750 | Exon 5 |
var(5738):[T:0.12]
Y F S C E Q P C N Q T T A G N A 121
G
C
T
G
A
C
A
T
T
T
C
T
G
A
A
G
A
G
T
C
T
T
C
T
G
G
A
A
A
T
T
T
T
C
C
A
G
A
A
A
G
A
A
A
A
G
A
T
G
A
5800
L T F L K S L L E I F Q K E K M 137
G
A
G
G
G
A
T
G
A
G
A
G
G
C
A
A
G
A
T
A
T
G
A
A
G
A
T
G
A
A
A
T
A
T
T
A
T
T
T
A
T
C
C
T
A
T
T
T
A
T
5850 |
UTR
R G M R G K I 144
T
A
A
A
T
T
T
A
A
A
A
A
G
C
T
T
T
C
T
C
T
T
T
A
A
G
T
T
G
C
T
A
C
A
A
T
T
T
A
A
A
A
A
T
C
A
A
G
T
A
5900
A
G
C
T
A
C
T
C
T
A
A
A
T
C
A
G
T
A
T
C
A
G
T
T
G
T
G
A
T
T
A
T
T
T
G
T
T
T
A
A
C
A
T
T
G
T
A
T
G
T
5950
C
T
T
T
A
T
T
T
T
G
A
A
A
T
A
A
A
T
AC ATATGTGGAA AAAACA
A
C
A
T GAGCTGGTCT
6000 |
var(5987):[-:0.01]
CTTGGCAATT ATTCATTTCT TGCTGCTCAG AACAAAGAAA GCTACAAGTG
6050
TTGTTAAGGG GAAGAATAGA TCAGAGACTC CTGTAGGAGT CTCTGTGATA
6100
AGACTCCTGA T
G
CTGAATAC AGACCCTCAG GCTCATAGGC TGTGGCTGGA
6150 |
var(6112):[A:0.02]
GCTGCAGGAG GGCTGCAGGG AGCAGTTACA AAGAATGTCT ATGAGGACCA
6200
TCTGAGGGTT GCCACTAGGG GAGGCTGAAG GCATGTCTGA CACTGCTAAG
6250
AGGGCTAGGG TCCTGAGAAA CTGGCCTTGT GCCTGAAAGA GGAGAAGGCA
6300
GCAGCTTGGA AGTGGGAGAC TGCTCAAGAA TGTGGGCATG CAGAATAAAT
6350
GCTTAATAAT TAAGTGCTTA ACCCACTAGT TATGG
T
A
G
G
A
A
G
T
A
G
A
T
A
T
T
6400 |
REPEAT
A
T
T
A
T
T
A
T
G
C
A
T
T
T
C
T
G
T
T
T
T
A
T
A
T
A
T
A
C
T
G
A
A
A
C
C
A
A
A
G
C
T
T
A
G
A
A
A
G
T
6450
C
T
G
C
A
T
G
G
C
A
T
T
C
C
C
A
A
G
A
T
C
C
C
A
C
A
G
G
T
G
G
T
G
A
G
A
T
T
T
A
G
A
A
G
A
A
G
G
A
T
6500
T
C
A
C
C
C
C
T
C
G
T
G
C
T
C
T
C
T
G
C
T
T
C
C
A
A
A
C
C
C
T
T
T
G
C
T
G
T
T
T GCATTCTGCC
6550
CCTTTCTTAT TCTCTTTATA CCAAGGGTGT GCATTGTGCT TCTTCCAACC
6600
ACAGCCTGAG GGTAAAATAG ACCCATCATA ATTCCAGTCC ACACTCTCAT
6650
ATCCAGAAAC CTAGGGAGTC AGGTTT