Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000221 CC 14 11 25 CG 0 7 7 GG 1 2 3 15.000 0.299 4.016 000312 AA 0 0 0 AG 1 0 1 GG 16 20 36 0.016 0.000 0.007 000367 CC 0 0 0 CT 0 1 1 TT 15 19 34 0.000 0.013 0.007 000542 -- 0 0 0 +- 1 0 1 ++ 18 20 38 0.014 0.000 0.007 000953 GG 19 17 36 GT 5 2 7 TT 0 1 1 0.324 3.951 0.786 001036 -- 23 20 43 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.006 001516 AA 20 20 40 AG 4 0 4 GG 0 0 0 0.198 0.000 0.100 001533 CC 1 2 3 CT 15 8 23 TT 8 10 18 3.219 0.045 1.472 001588 AA 20 12 32 AG 3 6 9 GG 1 2 3 2.617 0.800 3.369 001604 AA 0 0 0 AG 3 0 3 GG 21 20 41 0.107 0.000 0.055 002135 CC 20 14 34 CG 3 7 10 GG 1 2 3 2.617 0.616 2.863 002165 CC 21 18 39 CT 1 5 6 TT 0 0 0 0.012 0.342 0.230 002193 CC 1 2 3 CG 2 7 9 GG 20 14 34 4.707 0.616 3.687 002220 AA 1 2 3 AG 2 7 9 GG 20 14 34 4.707 0.616 3.687 002267 -- 0 0 0 +- 3 5 8 ++ 21 18 39 0.107 0.342 0.407 002425 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.011 0.000 0.005 002548 -- 5 8 13 +- 14 10 24 ++ 5 3 8 0.667 0.002 0.288 002668 AA 15 9 24 AG 7 9 16 GG 2 3 5 0.730 0.093 0.815 002814 AA 15 9 24 AC 7 9 16 CC 2 3 5 0.730 0.093 0.815 002937 CC 20 21 41 CT 4 0 4 TT 0 0 0 0.198 0.000 0.097 003259 AA 19 23 42 AG 3 0 3 GG 0 0 0 0.118 0.000 0.054 003288 AA 20 18 38 AG 2 4 6 GG 0 1 1 0.050 1.252 1.407 003307 GG 0 1 1 GT 2 4 6 TT 20 18 38 0.050 1.252 1.407 003685 AA 1 2 3 AG 3 7 10 GG 18 14 32 2.296 0.616 2.589 003966 CC 0 0 0 CT 0 1 1 TT 24 19 43 0.000 0.013 0.006 003975 CC 7 9 16 CG 16 10 26 GG 1 1 2 4.279 0.726 4.364 004561 CC 0 0 0 CT 1 0 1 TT 23 20 43 0.011 0.000 0.006 004827 GG 22 18 40 GT 2 2 4 TT 0 0 0 0.045 0.055 0.100 004889 AA 23 23 46 AT 1 0 1 TT 0 0 0 0.011 0.000 0.005 005025 -- 1 2 3 +- 3 7 10 ++ 20 14 34 2.617 0.616 2.863 005130 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 005602 AA 1 2 3 AG 3 7 10 GG 20 14 34 2.617 0.616 2.863 005732 CC 0 1 1 CT 5 3 8 TT 19 19 38 0.324 2.457 0.516 005968 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 006033 CC 15 14 29 CT 8 7 15 TT 1 2 3 0.003 0.616 0.303 006117 CC 15 10 25 CG 7 10 17 GG 2 3 5 0.730 0.040 0.639 006124 AA 18 13 31 AG 5 2 7 GG 0 1 1 0.342 2.939 0.569 006233 GG 20 12 32 GT 3 6 9 TT 1 2 3 2.617 0.800 3.369 006236 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 006644 AA 0 0 0 AT 1 0 1 TT 21 23 44 0.012 0.000 0.006 006781 -- 1 2 3 +- 5 7 12 ++ 16 13 29 0.499 0.505 1.153 007297 -- 19 14 33 +- 3 7 10 ++ 1 2 3 2.457 0.616 2.726 007301 AA 19 16 35 AG 1 0 1 GG 0 0 0 0.013 0.000 0.007 007351 CC 17 19 36 CT 3 0 3 TT 0 0 0 0.131 0.000 0.062 007455 CC 19 22 41 CG 3 0 3 GG 0 0 0 0.118 0.000 0.055 007535 CC 0 0 0 CT 1 0 1 TT 21 23 44 0.012 0.000 0.006 007593 AA 0 0 0 AG 3 0 3 GG 19 22 41 0.118 0.000 0.055 007807 CC 14 10 24 CT 8 10 18 TT 1 3 4 0.011 0.040 0.056 007951 CC 22 18 40 CT 2 4 6 TT 0 1 1 0.045 1.252 1.527 007969 AA 0 0 0 AC 3 0 3 CC 21 23 44 0.107 0.000 0.051 008023 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 008210 AA 1 2 3 AG 5 7 12 GG 17 14 31 0.571 0.616 1.348 008394 AA 0 0 0 AG 5 0 5 GG 18 23 41 0.342 0.000 0.152 008409 AA 1 2 3 AG 2 7 9 GG 20 14 34 4.707 0.616 3.687 008639 AA 21 23 44 AT 3 0 3 TT 0 0 0 0.107 0.000 0.051 008771 CC 1 2 3 CG 3 7 10 GG 19 14 33 2.457 0.616 2.726 008985 CC 19 14 33 CT 3 7 10 TT 1 2 3 2.457 0.616 2.726 009036 CC 20 23 43 CG 2 0 2 GG 1 0 1 4.707 0.000 10.478 009390 AA 0 0 0 AG 3 0 3 GG 20 23 43 0.112 0.000 0.052 009556 CC 1 2 3 CT 6 7 13 TT 16 14 30 0.195 0.616 0.872 009658 AA 0 0 0 AG 3 0 3 GG 20 23 43 0.112 0.000 0.052 010126 CC 18 18 36 CT 5 2 7 TT 0 1 1 0.342 4.203 0.786 010160 CC 0 0 0 CT 3 0 3 TT 20 21 41 0.112 0.000 0.055 010177 CC 1 2 3 CG 6 7 13 GG 16 12 28 0.195 0.399 0.714 010195 AA 16 12 28 AT 6 7 13 TT 1 2 3 0.195 0.399 0.714 010416 CC 23 19 42 CG 1 2 3 GG 0 0 0 0.011 0.053 0.054 010928 AA 19 22 41 AG 3 0 3 GG 0 0 0 0.118 0.000 0.055 010965 CC 21 14 35 CT 1 4 5 TT 1 1 2 9.521 0.825 5.994 011095 CC 1 2 3 CT 3 7 10 TT 20 14 34 2.617 0.616 2.863 011111 AA 0 0 0 AC 0 1 1 CC 24 22 46 0.000 0.011 0.005 011184 AA 5 8 13 AG 14 11 25 GG 5 4 9 0.667 0.004 0.241 011231 CC 20 14 34 CT 3 7 10 TT 1 2 3 2.617 0.616 2.863 011288 CC 0 1 1 CT 5 3 8 TT 19 19 38 0.324 2.457 0.516 011462 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 011499 CC 0 0 0 CG 3 0 3 GG 21 23 44 0.107 0.000 0.051 011616 CC 0 0 0 CG 3 0 3 GG 20 21 41 0.112 0.000 0.055 011662 AA 18 13 31 AG 3 6 9 GG 1 2 3 2.296 0.948 3.210 011896 AA 1 2 3 AG 3 7 10 GG 20 14 34 2.617 0.616 2.863 011904 AA 1 2 3 AG 3 7 10 GG 20 14 34 2.617 0.616 2.863 011909 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 012491 AA 23 23 46 AC 1 0 1 CC 0 0 0 0.011 0.000 0.005 013012 AA 15 17 32 AG 5 3 8 GG 0 2 2 0.408 5.290 2.074 013318 CC 0 0 0 CT 1 5 6 TT 23 17 40 0.011 0.362 0.224 013356 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 013463 CC 1 2 3 CT 6 7 13 TT 17 14 31 0.240 0.616 0.954 013473 AA 19 19 38 AT 5 3 8 TT 0 1 1 0.324 2.457 0.516 013484 GG 1 2 3 GT 3 7 10 TT 20 14 34 2.617 0.616 2.863 013528 AA 0 0 0 AC 1 0 1 CC 23 23 46 0.011 0.000 0.005 013635 CC 1 2 3 CG 3 7 10 GG 20 14 34 2.617 0.616 2.863 013702 CC 23 22 45 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 014003 AA 19 9 28 AC 3 4 7 CC 0 0 0 0.118 0.430 0.432 014325 AA 1 2 3 AT 3 6 9 TT 20 13 33 2.617 0.948 3.528 014565 GG 18 22 40 GT 0 1 1 TT 0 0 0 0.000 0.011 0.006 014784 AA 15 14 29 AG 4 7 11 GG 1 2 3 0.930 0.616 1.610 014926 AA 0 0 0 AC 3 0 3 CC 19 23 42 0.118 0.000 0.054 015083 CC 0 0 0 CT 3 0 3 TT 19 23 42 0.118 0.000 0.054 015242 AA 0 0 0 AG 3 0 3 GG 19 23 42 0.118 0.000 0.054 015272 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 015508 CC 19 23 42 CT 5 0 5 TT 0 0 0 0.324 0.000 0.148 015554 AA 1 2 3 AG 3 7 10 GG 20 14 34 2.617 0.616 2.863 015591 AA 21 23 44 AC 3 0 3 CC 0 0 0 0.107 0.000 0.051 015780 AA 1 2 3 AC 3 7 10 CC 19 14 33 2.457 0.616 2.726 015819 AA 0 0 0 AC 3 0 3 CC 21 23 44 0.107 0.000 0.051 015940 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 015976 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 016156 AA 18 13 31 AG 2 7 9 GG 1 2 3 4.203 0.505 3.210 016239 CC 18 18 36 CT 5 3 8 TT 0 2 2 0.342 5.624 2.504 016371 AA 19 23 42 AC 5 0 5 CC 0 0 0 0.324 0.000 0.148 016429 CC 0 0 0 CT 3 0 3 TT 21 23 44 0.107 0.000 0.051 016507 AA 0 0 0 AG 0 2 2 GG 24 21 45 0.000 0.048 0.022 016650 CC 8 12 20 CT 15 9 24 TT 1 2 3 3.219 0.028 1.439 016797 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 016919 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 017156 AA 0 2 2 AT 5 3 8 TT 19 18 37 0.324 5.624 2.613 017279 AA 0 0 0 AT 3 0 3 TT 21 23 44 0.107 0.000 0.051 017543 -- 6 12 18 +- 11 8 19 ++ 1 2 3 1.894 0.153 0.445 017582 -- 19 17 36 +- 0 5 5 ++ 0 0 0 0.000 0.362 0.173 017622 -- 0 0 0 +- 5 0 5 ++ 18 22 40 0.342 0.000 0.156 017831 CC 18 23 41 CT 5 0 5 TT 0 0 0 0.342 0.000 0.152 017943 AA 22 23 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 018045 AA 0 0 0 AT 3 0 3 TT 21 23 44 0.107 0.000 0.051 018092 GG 0 0 0 GT 5 0 5 TT 19 23 42 0.324 0.000 0.148 018101 -- 20 11 31 +- 3 9 12 ++ 1 3 4 2.617 0.277 2.659 018119 AA 19 17 36 AG 5 3 8 GG 0 2 2 0.324 5.290 2.504 018170 AA 0 0 0 AG 4 2 6 GG 19 20 39 0.209 0.050 0.230 018537 AA 20 23 43 AC 4 0 4 CC 0 0 0 0.198 0.000 0.093 018574 AA 0 0 0 AG 5 0 5 GG 19 23 42 0.324 0.000 0.148 018837 AA 24 22 46 AT 0 1 1 TT 0 0 0 0.000 0.011 0.005 018841 GG 1 2 3 GT 16 10 26 TT 7 11 18 4.279 0.017 2.527 019215 CC 18 23 41 CT 5 0 5 TT 0 0 0 0.342 0.000 0.152 019280 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 019544 CC 19 11 30 CT 3 9 12 TT 1 3 4 2.457 0.277 2.504 020103 CC 1 2 3 CT 15 10 25 TT 8 11 19 3.219 0.017 1.942 020196 AA 1 2 3 AG 16 10 26 GG 7 11 18 4.279 0.017 2.527 020209 AA 17 19 36 AG 5 3 8 GG 0 1 1 0.362 2.457 0.450 020469 AA 23 21 44 AT 0 2 2 TT 0 0 0 0.000 0.048 0.023 020562 AA 2 3 5 AT 13 10 23 TT 8 10 18 1.043 0.040 0.347 020923 AA 0 0 0 AC 1 0 1 CC 22 23 45 0.011 0.000 0.006 021243 AA 6 10 16 AG 15 10 25 GG 1 2 3 4.219 0.050 2.642 021903 -- 16 16 32 +- 5 3 8 ++ 0 1 1 0.383 1.976 0.324 022256 AA 0 0 0 AC 1 0 1 CC 23 22 45 0.011 0.000 0.006 022391 AA 23 22 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 022478 AA 16 9 25 AG 6 10 16 GG 2 3 5 1.407 0.007 0.930 022799 AA 1 2 3 AT 3 6 9 TT 18 11 29 2.296 0.655 2.894 022814 AA 4 0 4 AG 15 10 25 GG 5 10 15 1.526 2.222 1.980 022887 AA 5 11 16 AG 15 10 25 GG 4 1 5 1.526 0.468 1.075 023105 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 023113 AA 0 1 1 AG 5 3 8 GG 19 18 37 0.324 2.296 0.483 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 000542: A 001036: A 002267: C 002548: AGAAG 005025: C 006781: T 007297: T 017543: A 017582: A 017622: CAA 018101: T 021903: AAAG