************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 il3ra.phase.inp il3ra.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST il3ra.phase.out_freqs : haplotype frequency estimates il3ra.phase.out_pairs : most likely haplotype pairs for each individual il3ra.phase.out_recom : estimates of recombination parameters il3ra.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 134 Positions of loci: 1233 1299 1307 1398 1442 1490 1524 1561 1565 1884 2005 2018 2049 4728 4788 6717 6817 6829 6862 6921 6935 6984 7107 7195 7426 7451 7458 7459 7583 8153 8204 8284 9464 10550 10732 10886 11187 11277 11469 11554 11620 11623 11630 11672 11903 12312 12434 12480 12508 12512 12514 12536 12550 12561 12613 12614 12848 13028 13074 13168 13179 13247 13253 13419 13510 13570 13588 13659 13773 14619 14888 15086 15150 16270 16348 16407 17514 17536 17543 17577 17839 17918 17993 18000 18009 18090 18130 18159 18868 18875 18879 18894 18898 18904 19392 19467 19595 19623 20925 21463 22054 22266 22280 22860 22948 23651 23859 23910 24471 27903 27959 28062 28080 33400 33524 33620 33623 43716 43753 44035 44078 44209 44657 44861 46161 46226 46269 46400 46528 47862 48974 49105 49759 49785 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file il3ra.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 GAGCCCAGAGTCCTGICTAGGCATGACTGGATATACGCGTCGATADTTCTGTDCGACGTGGCCAGGCGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATGGTCDGGCCGGTTTCCTCTC 1.000000 2 GAGCCCAGAGTCCTGICTAGGCATGACTGAGTGTACGCGCCAGTGDTTCTGTDCGACGTGGCCAGGCGCTTGGACCTCTACGTTATGCCACGCICCGGTIAGACGATGCTGDGTGGTTDGGCCGGCGTCCTCTC 1.000000 3 GAGCCCAGAGTCCTGICTAGGCGTGACTGAATAGACGCGTCGATGDTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 4 GAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 5 GAGCCCAGAGTCCTGICTAGGCGTGACTGAGTGTACGCGCCAGTGDTTCTGTDCGACGTGGCCAGACGACGGGGCCTCGACGTGATGCTTTATDACGATIAGACGGCGCTGDGTAGTCDGGCGGGCGTCCTCCT 1.000000 6 GAGCCCAGAGTTCTGICTAGGCGTGACTGAATATACGCGTCGATADCAACGAICGGGGTGGCCAGGCGACTGCGCCTCGACGTGATGCTTTATDACGATDAGACGATGCCAIATAGTCDGGCCGGCGCTTTTTC 1.000000 7 GAGCCCAGAGTTCTGICTAGGCGTGACTGAATATACGCGTCGATADTTCTGTDCGACGTGGCCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 8 GAGCCCAGAGTTCTGICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACATAGCCAGGCGATGGGGCCTCGACGTGATACTTTATDACGATICGATAACGCTGDGTAGTCDGGCGGGCGTCCTCCT 1.000000 9 GAGCCCAGAGTTCTGICTAGGCGTGATTGAATATATCCGTCGACGICAACGAICGGGGTGGTCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 10 GAGCCCAGAGTTCTGICTAGGCGTGATTGAATATGCGCGTTGATGDTTCTTTDCTAGGTAGCCAGAGCACGGGGCCTCGACGTGATGCTTTATDACGATIAGATAACGCCAIATAATCDGGCGGGCGTCCTCCT 1.000000 11 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTATACGCGCCAGTGICTCTGAICGGGGCACCTGGACCACGACGCCTCGACGTGATACTTTATDACGATDCGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 12 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTATACGCGCCAGTGICTCTGAICGGGGCACCTGGACCACGACGCCTCGACGTGATACTTTATDACGATDCGATAACGCCAIATGGTCDGGCCGGCGTCCTCTT 1.000000 13 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTATACGCATCGATADTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 14 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGGGTGGCCAGACCACGACGCCTCGACGTGATACTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 15 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTATATCCATCGATADTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 16 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACCCGTCGACGICAACGAICGGGGTAGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 17 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACCCGTCGACGICAACGAICGGGGTAGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGTIAAGTGACGCTGDGTGGTCDGGCGGATGTCCCCTC 1.000000 18 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACGCGCCAGTGICTCTGAICGGCGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGICGATAACGCTGDGTAGTCDGGCGGGCGTCCTCCT 1.000000 19 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACGCGTCGATADCTCTGAICGGGGCACCCGGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 20 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGACGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 21 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGACGGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCCAIATGGTCDGGCCGGCGTCCTCCT 1.000000 22 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGACGGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 23 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 24 GAGCCCAGAGTTCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 25 GAGCCCAGAGTTCTGITTGAGGACCGCTAGATATACGCGTCGATADCAACGAICGGGGTGGCCAGGCGATGGGGCCTCGACGTGATGCTTTATIACGATICGATAACGCCAIATAGTCDGGCGGATTTCCCCTC 1.000000 26 GAGCCCAGAGTTCTGITTGAGGACCGCTAGATAGACCCGTCGATADTTCTGTDCGACGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGATTTCCCCTC 1.000000 27 GAGCCCAGAGTTCTGITTGAGGATCGCTAAGGGTACGCGCCAGTGICTCTGAICGGGGTGGCCAGGCGACTGCGCCTCGACGTGATGCTTTATDACGATIAGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 28 GAGCCCAAAGTCCTGITTGAGGACCGCTAAATATACGCGTCGATADTTCTGTDCGACGTGGTCAGGCGATTGGACCTCTACGTTATGCCACGCICCGGTIAGACGATGCTGIGTGGTCDGGCCGGCGTCCTCTT 1.000000 29 GAGCCCAAAGTCTCAICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGGGTACCCGGAGGACGGGGCCTCGACGTGATGCTTTATDACGATDCGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 30 GAGCCCAAACTCCCGITTGGGCACCGCCGAGTGTACGCGCCAGTGDTTCTGTDCGACGTGGCCAGGCGACGGGGCCTCGACGTGATGCTTTATDACGATIAGACGGCGCTGDGTAGTCDGGCGGGCGTCCTCCT 1.000000 31 GAGCCCAAACTCCCAITTGGGCACCGCCGAGTGTACGCGCCAGTGDTTCTTTDCGAGATGGCCAGGCGACGGGGCCTCGACGTGATGCTTTATDACGAGIAGACGGCGCTGDGTAGTCDGGCGGGCGTCCTCCT 1.000000 32 GAGCCCGAAGACTTGICTAGGCGTGACTGAAGATACGCGTCGATADTTCTGTDCGACATAGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAGATAACGCCAIATAATCDGGCGGGCGTCCTCCT 1.000000 33 GAGCCCGAAGACTTGICTAGGCGTGACTGAGTATACGCGCCAGTGDTTCTGAICGAGGTGGCCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCIGGTGAGCGTCCTCCT 1.000000 34 GAGCCCGAAGACTTGITTAGGCACCACTAGATATATCCGTCGACGICAACGAICGGGGTGGTCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 35 GAGCCCGAAGACTTGITTAGGCACCGCTAGATATATCCGTCGACGICAACGAICGGGGTGGTCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 36 GATCCCAGAGTTCTGITTGAGGACCGCTAGATATACGCGTCGATADTTCTGTDCGACGTGGCCAGGCGACTGCGCCTCGACGTGATGCTTTATDACGATDAGACGATGCCAIATAGTCDGGCCGGCGCTTTTTC 1.000000 37 GATCCCAAAGTCTTGICTAGGCGTGACTGAGTAGACGCATCGATADTTCTGTDCGACGTGGCCAGACGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGCGGCCDGGCCGGCGCTTTTTC 1.000000 38 GATCCCAAAGTCTTGICTAGGCGTGACTGAGTAGACGCATCGATADTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAGATAACGCCAIATAATCDGGCGGGCGTCCTCCT 1.000000 39 GATCCCAAAGTCTTGICTAGGCGTGATTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGGCGCTTGGACCTCTACGTTATGCCACGCICCGGTIAGACGATGCTGIGCGGCCDGGCCGGCGCTTTTTC 1.000000 40 GATCCCAAAGTCTCGDCGAGGCGTGACTGAATATACGCGTCGATADTTCTGTDCGACGTACCCGGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATGGTCDGGCCGGCGTCCTCTT 1.000000 41 GATCCCAAAGTCTCGDCGAGGCGTGACTGAGTGTACGCGCCAGTGDTTCTGTDCGACGTGGTCAGAGGACGGGGCCTCGACGTGATGGTTTATDACGATICGATAACGCTGDGTGGTTDGGCCGGCGTCCTCCT 1.000000 42 GATCCCAAAGTCTCGDCGAGGCGTGACTGAGTGTACGCGTCGATADCAACGAICGGGGTGGCCAGGCGACGGGGCCTCGACGTGATGCTTTATDACGATIAGACGGCGCTGDGTAGTCIGGTGAGCGTCCTCCT 1.000000 43 GATCCCAAAGTCTCGDCGAGGGACCGCTAAATATACCTGTCGATADTTCTGTDCGACGTGGCCAGAGCATTGGATCTGGGTGTGTTGCTTTATDATAATIAGATAGCGTTGDGTGGTTDGGCCGGCGTCCTCTC 1.000000 44 GATCCCAAAGTCTCAICTAGGCGTGACTGAATATGCGCGTTGATGDTTCTTTDCTAGGTAGCCATACCCTTGGGCCTCGACGTGATACTTTATDACGATDCGATAACGCCAIATAGTCDGGCGGATTTCCCCTC 1.000000 45 GATCCCAAAGACTTGICTAGGCGTGATTGGATATACGCGCCAGTGDTTCTGTDCGACGTACCCGGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 46 GATCCCGAAGTCCTGICTAGGCATGACTGAGGGTACGCGTCGATADTTCTGTDCGACGTGGCCAGACGCCGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 47 GATCCTAGAGTCCCAICTAGGCGTGACTGAATATGCGCGTTGATGDTTCTTTDCTAGGTAGCCAGAGCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 48 GATCCTAAAGTCCCAICTAGGCGTGACTGAATATACGCGTCGACGICAACGAICGGCGTGGCCAGACCATTGGATTGCGACCCTACGGCACGCIACGGTIAAGTGACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 49 GATCCTAAAGTCTTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 50 GATCCTAAAGTCTCAICTAGGCGTGACTGAATATACGCGCCAGTGICAACGAICGGGGTGGTCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGGCGCTCTTTC 1.000000 51 GATCCTAAAGTCTCAICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACGTGGCCAGACCATTGGATTGCGACCCTACGGCACGCIACGGTIAAGTGACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 52 GATCCTAAAGTCTCAICTAGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCGGACGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 53 GATCCTAAAGTCTCAICTGGGCGTGACTGAGTAGACGCGCCAGTGICTCTGAICGGCGTGGCCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 54 GATCCTAAAGTCTCAITTGAGGACCGCTAAATATACGCGCCAGTGDTTCTGAICGACGTGGCCAGAGCATTGGATCTGGGTGTGTTGCTTTATDATAATIAGATAACGCTGIGCGGCCDGGCCGGCGCTTTTTC 1.000000 55 GATCGCAAAGTCTCGDCTGGACATCGCCGGATATGCGCGTTGATGDTTCTTTDCTAGGTAGCCATACCCCGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 56 GATCGCAAAGTCTCGDTTGGACATCGCCGAATATACCCGTCGACGICAACGAICGGGGTGGTCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 57 GATCGCAAAGTCTCGDTTGGACATCGCCGAATATACGCGTCGATADTTCTGTDCGACGTGGTCAGGGGATGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGIGCGGCCDGGCCGGCGCTTTTTC 1.000000 58 GGGGCCAAGGACTTGICTAGGCATGACTGAAGATACCTGTCGATADTTCTGTDCGAGGTGGCCGGGCGCCTGCGCCTCGACGTGATACTTTATDACGATDAGACGATGCTGIGTGGTCDGGCCGGCGTCCTCTT 1.000000 59 GGGGCCAAGGACTTGICTAGGCGTGACTGAATATATCCGTCGATADCTCTGTDTGAGGTGGCCAGAGGATTGGATCTGGGTGTGATGCTTTATDATAATIAGATAACGCTGDGTGGTCDGGCCGGTGTCCTCTC 1.000000 60 GGGGCCGAGGTCCTGITTAGGCGTGACTGAATATGCGCGTTGATGDTTCTTTDCTAGGTAGCCATACCCTTGGGCCGCGACCTTACGGCACGCIACGGTIAAGTGACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 61 GGGGCCGAGGTCCTGITTGAGCGTGACTGAGTAGACGCGCCAGTGICTCTGAICGGCGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDATGATICGATAACGCCAIATGGTCDGGCCGGCGTCCTCTT 1.000000 62 GGGGCCGAGGTCCTGITTGAGGACCGCTAAATAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGCATTGGATCTGGGTGTGTTGCTTTATDATAATIAGATAGCGTTGDGTGGTTDGGCCGGCGTCCTCTC 1.000000 63 AAGCCCAGAGTCCTGICTAGGCGTGACTGGATATATGCGCCAGTGDTTCTGTDCGACGTGGCCAGGCGACGGGGCCTCGACGTGATGCTTTATDACGATIAGACGGCGCTGDGTAGTCDGGCGGGCGTCCTCCT 1.000000 64 AAGCCCAGAGTCCTGICTAGGCGTGACTGGGTATACGCGTCGATADTTCTGTDCGACGTGGCCAGGCGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGIGTGGTCDGGCCGGCGTCCTCTT 1.000000 65 AAGCCCAGAGTCCTGICTAGGCGTGACTGAATATATCCGTCGACGICAACGAICGGGGCGGTCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCIGGTGAGCGTCCTCCT 1.000000 66 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACCCGTCGACGICAACGAICGGGGTGGTCAGAGGATTGGATTGCGACCCTACGGCACGCIACGGGIAAGTGACGCTGDGTGGTCDCACCGGCGCTTTTTC 1.000000 67 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGCCAGTGICTCTGAICGGGGCACCCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 68 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGCCAGTGICTCTGAICGGGGCACCCGGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 2.000000 69 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGCCAGTGICTCTGAICGGGGCACCCGGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGATTTCCCCTC 1.000000 70 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGCCAGTGICTCTGAICGGGGCACCCGGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGIGTGGTCDGGCCGGCGTCCTCTT 1.000000 71 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGCCAGTGICTCTGAICGGGGCACCTGTACCCTTGGGCCTCGACGTGATGCTTTATDACGATIAGACGACACTGDGTGGTCDGGCGGATTTCCTCTC 1.000000 72 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACGTGGCCAGACGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 73 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACGTGGCCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 74 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATIAGACGACACTGDGTGGTTDGGCCGGCGTCCTCCT 1.000000 75 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACGTGGCCAGAGGATTGGATTGCGACGTGATGCCACGCIACGGGIAAGTGACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 76 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATACGCGTCGATADTTCTGTDCGACATAGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTTDGGCCGGCGTCCTCCT 1.000000 77 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATATCCGTCGATADTTCTGTDCGACGTGGTCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 78 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGCGTGGCCAGACCACTACGCCTCGACGTGATACTTTATDACGATDCGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 79 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGGGTGGCCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 80 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGGGTGGCCAGACCACGACGCCTCGACGTGATACTTTATDACGATDCGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 81 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGGGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 82 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGGGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 83 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGGGTGGTCAGACCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 84 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTAGACCCGTCGATADTTCTGTDCGACGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATIAGACGACACTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 85 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTAGACGCGCCAGTADCTCTGTDTGAGGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 86 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTAGACGCGTTGATGDTTCTTTDCTAGGTAGCCATACCCTTGGGCCTCGACGTGATGCTTTATDACGATIAGACGACACCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 87 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTAGACGCATCGATADTTCTGTDCGACGTGGCCAGAGGACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGGCGCTCTTTC 1.000000 88 AAGCCCAGAGTCCTGICTAGGCGTGACTGAGTAGACGCATCGATADTTCTGTDCGACGTGGCCATACCCCGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTCCTCCT 1.000000 89 AAGCCCAGAGTCCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGATTTCCCCTC 1.000000 90 AAGCCCAGAGTCCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCCAIATAGTCDGGCGGGCGTTTTTTC 1.000000 91 AAGCCCAGAGTCCTGICTGGGCGTGACTGAGTAGACGCGTCGATADTTCTGTDCGACGTGGCCAGAGCACGGGGCCTCGACGTGATGCTTTATDACGATICGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 92 AAGCCCAGAGTCCTGICTGGGCGTGACTGAGTAGACGCATCGATADTTCTGTDCGACGTGGCCATACCCTTGGGCCTCGACGTGATGCTTTATDACGATDCGATAACGCTGDGTAATCDGGCGGGCGTCCTCCT 1.000000 93 AAGCCCAGAGTTCTGICTAGGCGTGACTGAGTATATCCGTCGACGICAACGAICGGCGTGGCCAGACCACTACGCCTCGACGTGATACTTTATDACGATDCGATAACGCTGDGTGGTCDGGCGGATTTCCCCTC 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (25,63) D002: (2,33) D003: (27,59) D004: (17,62) D005: (3,41) D006: (30,57) D007: (32,37) D008: (6,8) D009: (39,75) D010: (1,64) D011: (54,85) D012: (28,36) D013: (43,61) D014: (90,7) D015: (42,76) D016: (31,73) D033: (4,93) D034: (21,72) D035: (5,40) D036: (46,70) D037: (65,74) D038: (60,55) D039: (45,58) D040: (9,56) E001: (44,78) E002: (14,50) E003: (52,79) E004: (38,68) E005: (83,13) E006: (19,84) E007: (71,87) E008: (67,81) E009: (80,89) E010: (88,92) E011: (15,20) E012: (12,35) E013: (23,29) E014: (68,69) E015: (47,53) E016: (11,82) E017: (18,66) E018: (51,91) E019: (86,48) E020: (22,26) E021: (16,77) E022: (24,49) E023: (10,34) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 G A G C C C A G A G T T C T G I T T G A G G A C C G C T A G A T A T A C G C G T C G A T A D C A A C G A I C G G G G T G G C C A G G C G A T G G G G C C T C G A C G T G A T G C T T T A T I A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G A T T T C C C C T C [A] A G C C C A G A G T C C T G I C T A G G C G T G A C T G G A T A T A T [G] C G C C A G T G D T T C T G T D C G A C G T G G C C A G G C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A C G G C G C T G D G T A G T C D G G C G G G C G T C C T C C T 0 D002 G A G C C C (A) (G) A G (T) C (C) T G I C T A G G C A T G A C T G A G T G T A C G C G C C A G T G D T T C T G T D C G A C G T G G C C A G G C G C T T G G A C C T C T A C G T T A T G C C A C G C I C C G G T I A G A C G A T G C T G D G T G G T T D G G C C G G C G T C C T C T C G A G C C C (G) (A) A G (A) C (T) T G I C T A G G C G T G A C T G A [G] T A T A C G C G C C A G T G D T T C T G A I C G A G G T G G C C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C I G G T G A G C G T C C T C C T 0 D003 G A G C C C A G A G T T C T G I T T G A G G A T C G C T A A G G G T A C G C G C C A G T G I C T C T G A I C G G G G T G G C C A G G C G A C T G [C] G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A [T] A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T G G G [G] C C A [A] [G] G [A] C [T] T G I C T A G G C G T G A C T G A A T A T A T C C G T C G A T A D C T C T G T D T G A G G T G G C C A G [A] [G] G A T T G G A T C T G G G T G T G A T G C T T T A T D A T A A T I A G A T A A C G C T G D G T G G T C D G G C C G G T G T C C T C T C 0 D004 G A G C C C A G A G T T C T G I C T G G G C G T G A C T G A G T A G A C C C G T C G A C G I C A A C G A I C G G G G T A G C C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G T I A A G T G A C G C T G D G T G G T C D G G C G G A T G T C C C C T C G G G G C C G A G G T C C T G I T T G A G G A C C G C T A A A T A G A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G C A T T G G A T C T G G G T G T G T T G C T T T A T D A T A A T I A G A T A G C G T T G D G T G G T T D G G C C G G C G T C C T C T C 0 D005 G A (G) C C C A (G) A G T C (C) (T) G (I) C (T) A G G C G T G A C T G A (A) T (A) (G) A C G C G (T) C (G) (A) T G D T T C T G T D C G A C G T G G (C) C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C G A (T) C C C A (A) A G T C (T) (C) G (D) C (G) A G G C G T G A C T G A (G) T (G) (T) A C G C G (C) C (A) (G) T G D T T C T G T D C G A C G T G G (T) C A G A G G A C G G G G C C T C G A C G T G A T G G T T T A T D A C G A T I C G A T A A C G C T G D G T G G T T D G G C C G G C G T C C T C C T 0 D006 G A G C C C A A A C T C C C G I T T G G G C A C C G C C G A G T G T A C G C G C C A G T G D T T C T G T D C G A C G T G G C C A G G C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A C G G C G C T G D G T A G T C D G G C G G G C G T C C T C C T G A T C G C A A A G T C T C G D T T G G A C A T C G C C G A A T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G T C A G G G G A T G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G I G C G G C C D G G C C G G C G C T T T T T C 0 D007 G A (G) C C C (G) A A G (A) C T T G I C T A G G C [G] T G A C T G A A G A T A C [G] C G T C G A T A D T T C T G T D C G A C A T A G C C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A G A T A A C G C C A I A T A A T C D G G C G G G C G T C C T C C T G A (T) C C C (A) A A G (T) C T T G I C T A G G C G T G A C T G A G T A G A C G C [A] T C G A T A D T T C T G T D C G A C G T G G C C A G A C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G C G G C C D G G C C G G C G C T T T T T C 0 D008 G A G C C C A G A G T T C T G I C T A G G C G T G A C T G A (A) T A T A C G C G T C G A T A D C A A C G A I C G [G] G G T G G C C A G G C G A C T G C G C C T C G A C G T G A T G C T T T A T D A C G A T D A G A C G A T G C C A I A T A G T C D G G C C G G C G C T T T T T C G A G C C C A G A G T T C T G I C T A G G C G T G A C T G A (G) T A T A C G C G T C G A T A D T T C T G T D C G A C A T A G C C A G G C G A T G G G G C C T C G A C G T G A T A C T T T A T D A C G A T I C G A T A A C G C T G D G T A G T C D G G C G G G C G T C C T C C T 0 D009 G A T C C C A A A G T C T T G I C T A G G C G T G A T T G A G T A [G] A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G [G] [C] G [C] T T G G A C C T C T A C G T T A T G C C A C G C I C C G G T I A G A C G A T G C T G I G C G G C C D G G C C G G C G C T T T T T C A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A [T] A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A [G] G A T T G G A T T G C G A C G T G A T G C C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 D010 [G] A G C C C A G A G T C C T G I C T A G G C A T G A C T G G A T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G G C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T G G T C D G G C C G G T T T C C T C T C [A] A G C C C A G A G T C C T G I C T A G G C G T G A C T G G G T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G G C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G I G T G G T C D G G C C G G C G T C C T C T T 0 D011 G A [T] C C [T] A A A G T C [T] C A I T T G A G G A C C G C T A A A T A T A C G C G C C A G T G D T T C T G A I C G A C G T G G C C A G A G C A T T G G A T C T G G G T G T G T T G C T T T A T D A T A A T I A G A T A A C G C T G I G C G G C C D G G C C G G C G C T T T T T C A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A G A C G C G C C A G T A D C T C T G T D T G A G G T G G C C A G [A] [G] [G] A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 D012 G A G C C C A A A G T C C T G I T T G A G G A C C G C T A A A T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G T C A G G [C] G [A] T T G G A C C T C T A C G T T A T G C C A C G C I C C G G T I A G A C G A T G C T G I G T G G T C D G G C C G G C G T C C T C T T G A T C C C A G A G T T C T G I T T G A G G A C C G C T A G A T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G G C G A C T G C G C C T C G A C G T G A T G C T T T A T D A C G A T D A G A C G A T G C C A I A T A G T C D G G C C G G C G C T T T T T C 0 D013 G A T C C C A A A G T C T C G D C G A G G G A C C G C T A A A T A T A C C T G T C G A T A D T T C T G T D C G A C G T G G C C A G A G C A T T G G A T C T G G G T G T G T T G C T T T A T D A T A A T I A G A T A G C G T T G D G T G G T T D G G C C G G C G T C C T C T C G G G G C C G A G G T C C T G I T T G A G C G T G A C T G A G T A G A C G C G [C] C [A] [G] T G [I] [C] [T] [C] [T] G [A] [I] C G [G] C G T G G C C A G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A T G A T I C G A T A A C G C C A I A T G G T C D G G C C G G C G T C C T C T T 0 D014 (A) A G C C C A G A G T (C) C T G I C T (G) G G C G T G A C T G A (G) T A (G) A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T T T T T T C (G) A G C C C A G A G T (T) C T G I C T (A) G G C G T G A C T G A (A) T A (T) A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 D015 G A T C C C A A A G T C T C G D C G A G G C G T G A C T G A G T G T A C G C G T C G A T A D C A A C G A I C G [G] G G T G G C C A G G C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A C G G C G C T G D G T A G T C I G G T G A G C G T C C T C C T [A] A G C C C A G A G T [C] C T G I C T A G G C G T G A C T G A G T A T A C G C G T C G A T A D T T C T G T D C G A C A T A G C C A G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T [T] D G G C C G G C G T C C T C C T 0 D016 G A G C C C A A A C T C C C A I T T G G G C A C C G C C G A G T G T A C G C G C C A G T G D T T C T T T D C G A G A T G G C C A G G C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A G I A G A C G G C G C T G D G T A G T C D G G C G G G C G T C C T C C T [A] A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 D033 G A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T A A G C C C A G A G T T C T G I C T A G G C G T G A C T G A G T A T A T C C G T C G A C G I C A A C G A I C G G C G T G G C C A G A C C A C T A [C] G C C T C G A C G T G A T A C T T T A T D A C G A T D C G A T A A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 D034 (G) A G C C C A G A G T (T) C T G I C T (G) G G C G T G A C T G A G T A (G) A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A (G) G A C G G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C C A I A T (G) G T C D G G C (C) G G C G T C C T C C T (A) A G C C C A G A G T (C) C T G I C T (A) G G C G T G A C T G A G T A (T) A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A (C) G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T (A) G T C D G G C (G) G G C G T C C T C C T 0 D035 G A G C C C A G A G T C C T G I C T A G G C [G] T G A C T G A G T G T A C G C G C C A G T G D T T C T G T D C G A C G T G G C C A G A C G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A C G G C G C T G D G T A G T C D G G C G G G C G T C C T C C T G A T C C C A A A G T C T C G D C G A G G C G T G A C T G A A T A T A C G C G T C G A T A D T T C T G T D C G A C G T A C C C G G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T G G T C D G G C C G G C G T C C T C T T 0 D036 (G) A (T) C C C (G) (A) A G T C C T G I C T A G G C (A) T G A C T G A G (G) (G) T A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A (C) G (C) C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C (C) (A) I (A) T (A) G T C D G G C (G) G G C G T C C T C (C) T (A) A (G) C C C (A) (G) A G T C C T G I C T A G G C (G) T G A C T G A G (T) (A) T A C G C G C C A G T G I C T C T G A I C G G G G C A C C C G G A (G) G (A) C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C (T) (G) I (G) T (G) G T C D G G C (C) G G C G T C C T C (T) T 0 D037 A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A A T A T A T C C G T C G A C G I C A A C G A I C G G G G C G G T C A G A (C) (C) A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I (C) G A (T) (A) A C (G) C (C) (A) (I) (A) T (A) G T [C] (I) G G (T) (G) (A) G C G T C C T C C T A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A (G) (G) A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I (A) G A (C) (G) A C (A) C (T) (G) (D) (G) T (G) G T [T] (D) G G (C) (C) (G) G C G T C C T C C T 0 D038 G (G) (G) (G) (C) C (G) A (G) G T C (C) (T) G (I) [T] T (A) G (G) C (G) T (G) (A) C (T) G (A) A T A T G C G C G T T G A T G D T T C T T T D C T A G G T A G C C A T A C C C T T G G G C C G C G A C C T T A C G G C A C G C I A C G G T I A A G T G A C G C T G D G T G G T C D C A C C G G C G C T T T T T C G (A) (T) (C) (G) C (A) A (A) G T C (T) (C) G (D) [C] T (G) G (A) C (A) T (C) (G) C (C) G (G) A T A T G C G C G T T G A T G D T T C T T T D C T A G G T A G C C A T A C C C C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D C A C C G G C G C T T T T T C 0 D039 G (A) (T) (C) C C A A (A) G A C T T G I C T A G G C (G) T G A (T) T G (G) A (T) A T A [C] (G) (C) G (C) C (A) (G) T (G) D T T C T G T D C G A C G T [A] [C] C C G G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C G (G) (G) (G) C C A A (G) G A C T T G I C T A G G C (A) T G A (C) T G (A) A (G) A T A C (C) (T) G (T) C (G) (A) T (A) D T T C T G T D C G A G G T [G] [G] C C G G G C G C C T G C G C C T C G A C G T G A T A C T T T A T D A C G A T D A G A C G A T G C T G I G T G G T C D G G C C G G C G T C C T C T T 0 D040 G A (G) C (C) C A (G) A G T (T) (C) (T) G (I) [C] T (A) G (G) C (G) T (G) (A) (T) (T) G A A T A T A (T) C C G T C G A C G I C A A C G A I C G G G G T G G T C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T G A (T) C (G) C A (A) A G T (C) (T) (C) G (D) [T] T (G) G (A) C (A) T (C) (G) (C) (C) G A A T A T A (C) C C G T C G A C G I C A A C G A I C G G G G T G G T C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D C A C C G G C G C T T T T T C 0 E001 G A T C C C A A A G T C T C A I C T A G G C G T G A C T G A A T A T G C G C G T T G A T G D T T C T T T D C T A G G T A G C C A T A C C C T T G G G C C T C G A C G T G A T A C T T T A T D A C G A T D C G A T A A C G C C A I A T A G T C D G G C G G A T T T C C C C T C A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A T C C G T C G A C G I C A A C G A I C G G C G T G G C C A G A C C A C T A [C] G C C T C G A C G T G A T A C T T T A T D A C G A T D C G A T A A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 E002 G A G C C C A G A G T T C T G I C T G G G C G T G A C T G A G T A T A T C C G T C G A C G I C A A C G A I C G G G G T G G C C A G A C C A C G A C G C C T C G A C G T G A T A C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D G G C G G A T T T C C C C T C G A T C C T A A A G T C T C A I C T A G G C G T G A C T G A A T A T A C G C G C C A G T G I C A A C G A I C G G G G T G G T C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D G G C G G G C G C T C T T T C 0 E003 (G) A (T) C C (T) A (A) A G T C (T) (C) (A) I C T A G G C G T G A C T G A G T A (G) A (C) (G) C G T C G A (T) (A) (D) [T] [T] [C] [T] G [T] (D) C G (A) (C) G T G G C C (G) G A C (G) A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C (A) A (G) C C (C) A (G) A G T C (C) (T) (G) I C T A G G C G T G A C T G A G T A (T) A (T) (C) C G T C G A (C) (G) (I) [C] [A] [A] [C] G [A] (I) C G (G) (G) G T G G [C] C (A) G A C (C) A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 E004 (G) A (T) C C C A (A) A G T C (T) T G I C T A G G C G T G A C T G A G T A (G) A C G C (A) (T) C (G) (A) T (A) (D) (T) T C T G (T) (D) C G (A) (C) G (T) (G) (G) C C (A) G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A G A T A A C G C C A I A T A A T C D G G C G G G C G T C C T C C T (A) A (G) C C C A (G) A G T C (C) T G I C T A G G C G T G A C T G A G T A (T) A C G C (G) (C) C (A) (G) T (G) (I) (C) T C T G (A) (I) C G (G) (G) G (C) (A) (C) C C (G) G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 E005 (A) A G C C C A G A G T (C) C T G I C T (A) G G C G T G A C T G A G T A T A (T) (C) C (G) T C G A (C) (G) (I) C A A C G A (I) C G (G) (G) G T G G (T) C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T (G) A G C C C A G A G T (T) C T G I C T (G) G G C G T G A C T G A G T A T A (C) (G) C (A) T C G A (T) (A) (D) [T] [T] [C] [T] G [T] (D) C G (A) (C) G T G G (C) C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 E006 (G) A G C C C A G A G T (T) C T G I C T (G) G G C G T G A C T G A G T A G A C (G) C G T C G A T A D C T C T G A I C G G G G C A C C C G G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I (C) G A (T) (A) A C (G) C T G D G T G G T C D G G C G G A T T T C C C C T C (A) A G C C C A G A G T (C) C T G I C T (A) G G C G T G A C T G A G T A G A C (C) C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I (A) G A (C) (G) A C (A) C T G D G T G G T C D G G C G G A T T T C C C C T C 0 E007 A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A C G C G C C A G T G I C T C T G A I C G G G G C A C C T G T A C C C T T G G G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A C G A C A C T G D G T G G T C D G G C G G A T T T C C T C T C A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A G A C G C A T C G A T A D T T C T G T D C G A C G T G G C C A G [A] [G] G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D G G C G G G C G C T C T T T C 0 E008 A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A C G C G C C A G T G I C T C T G A I C G G G G C A C C C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A T C C G T C G A C G I C A A C G A I C G G G G T G G C C A G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 E009 A A G C C C A G A G T C C T G I C T (A) G G C G T G A C T G A G T A T A T C C G T C G A C G I C A A C G A I C G G G G T G G C C A G A (C) C A C G (A) (C) G C C T C G A C G T G A T (A) C T T T A T D A C G A T (D) C G A T A A C G C C A I A T A G T C D G G C G G (G) (C) (G) T C C (T) C (C) (T) A A G C C C A G A G T C C T G I C T (G) G G C G T G A C T G A G T A G A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A (G) C A C G (G) (G) G C C T C G A C G T G A T (G) C T T T A T D A C G A T (I) C G A T A A C G C C A I A T A G T C D G G C G G (A) (T) (T) T C C (C) C (T) (C) 0 E010 A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A G A C G C A T C G A T A D T T C T G T D C G A C G T G G C C A T A C C C C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T A A G C C C A G A G T C C T G I C T G G G C G T G A C T G A G T A G A C G C A T C G A T A D T T C T G T D C G A C G T G G C C A T A C C C T T G G G C C T C G A C G T G A T G C T T T A T D A C G A T D C G A T A A C G C T G D G T A A T C D G G C G G G C G T C C T C C T 0 E011 G A G C C C A G A G T T C T G I C T G G G C G T G A C T G A G T A (T) A (T) (C) C (A) T C G A T A D T T C T G T D C G A C G T G G C C A G A (G) G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C G A G C C C A G A G T T C T G I C T G G G C G T G A C T G A G T A (G) A (C) (G) C (G) T C G A T A D T T C T G T D C G A C G T G G C C A G A (C) G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 E012 G A G C C C A G A G T T C T G I C T G G G C G T G A C T G A G T A T A C G C G C C A G T G I C T C T G A I C G G G G C A C C T G G A C C A C G A C G C C T C G A C G T G A T A C T T T A T D A C G A T D C G A T A A C G C C A I A T [G] G T C D G G C C G G C G T C C T C T T G A G C C C G A A G A C T T G I T T A G G C A C C G C T A G A T A T A T C C G T C G A C G I C A A C G A I C G G G G T G G T C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 E013 G A G C C C A (G) A G T (T) (C) (T) (G) I C T (G) G G C G T G A C T G A G T A (G) A (C) (G) C G T C G A (T) (A) (D) (T) (T) (C) (T) G (T) (D) C G (A) (C) G T (G) (G) C C (A) G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C C A I A T A G T C D G G C G G G C G T C C T C C T G A G C C C A (A) A G T (C) (T) (C) (A) I C T (A) G G C G T G A C T G A G T A (T) A (T) (C) C G T C G A (C) (G) (I) (C) (A) (A) (C) G (A) (I) C G (G) (G) G T (A) (C) C C (G) G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T D C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 E014 A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A C G C G C C A G T G I C T C T G A I C G G G G C A C C C G G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A C G C G C C A G T G I C T C T G A I C G G G G C A C C C G G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G A T T T C C C C T C 0 E015 G A T C C T A (G) A G T C (C) C A I C T (A) G G C G T G A C T G A A T A T G C G C G T T G A T G D T T C T T T D C T A G G T A G C C A G A G C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D C A C C G G C G C T T T T T C G A T C C T A (A) A G T C (T) C [A] I C T (G) G G C G T G A C T G A G T A G A C G C G C C A G T G [I] [C] T C T G [A] [I] C G [G] C G T G G C C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D C A C C G G C G C T T T T T C 0 E016 G A G C C C A G A G T T C T G I C T G G G C G T G A C T G A G T A T A C G C G C C A G T G I C T C T G A I C G G G G C A C C T G G A C C A C G A C G C C T C G A C G T G A T A C T T T A T D A C G A T D C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T A A G C C C A G A G T C C T G I C T A G G C G T G A C T G A G T A T A T C C G T C G A C G I C A A C G A I C G G G G T G G C C A G [A] [G] G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 E017 [G] A G C C C A G A G T (T) C T G I C T (G) G G C G T G A C T G A G T A (G) A C (G) C G (C) C (A) (G) (T) G I C (T) (C) (T) G A I C G G C G T G G C C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I C G A T A A C G C T G D G T A G T C D G G C G G G C G T C C T C C T [A] A G C C C A G A G T (C) C T G I C T (A) G G C G T G A C T G A G T A (T) A C (C) C G (T) C (G) (A) (C) G I C (A) (A) (C) G A I C G G G G T G G T C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D C A C C G G C G C T T T T T C 0 E018 (G) A (T) C C (T) A (A) A G T C (T) (C) (A) I C T (A) G G C G T G A C T G A G T A (T) A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A C C A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G T I A A G T G A C G C T G D G T G G T C D C A C C G G C G C T T T T T C (A) A (G) C C (C) A (G) A G T C (C) (T) (G) I C T (G) G G C G T G A C T G A G T A (G) A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 E019 (A) A (G) C C (C) A (G) A G T C [C] (T) (G) I C T A G G C G T G A C T G A (G) T A (G) A C G C G T (T) G A (T) G (D) (T) (T) (C) (T) (T) (T) (D) C (T) (A) (G) G T (A) G C C A T A C C C T T G G G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A C G A C A C C A I A T A G T C D G G C G G G C G T C C T C C T (G) A (T) C C (T) A (A) A G T C [C] (C) (A) I C T A G G C G T G A C T G A (A) T A (T) A C G C G T (C) G A (C) G (I) (C) (A) (A) (C) (G) (A) (I) C (G) (G) (C) G T (G) G C C A G A C C A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G [T] I A A G T G A C G C T G D G T G G T C D C A C C G G C G C T T T T T C 0 E020 G A G C C C A G A G T T C T G I (C) T G (G) G (C) (G) [T] (G) (A) C T (G) (A) (G) T A G A C (G) C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G G A C G G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C G A G C C C A G A G T T C T G I (T) T G (A) G (G) (A) C (C) (G) C T (A) (G) (A) T A G A C (C) C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G A T T T C C C C T C 0 E021 G A G C C C A G A G T (T) C T G I C T (G) G G C G T G A C T G A G T A G A C C C G T C G A C G I C A A C G A I C G G G G T A G C C A G [A] [G] G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C T G D G T G G T C D G G C G G A T T T C C C C T C [A] A G C C C A G A G T (C) C T G I C T (A) G G C G T G A C T G A G T A T A T C C G T C G A T A D T T C T G T D C G A C G T G G T C A G [A] [G] G A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T 0 E022 G A G C C C A G A G T T C T G I C T G G G C G T G A C T G A G T A G A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C G A T C C T A A A G T C T T G I C T G G G C G T G A C T G A G T A G A C G C G T C G A T A D T T C T G T D C G A C G T G G C C A G A G G A T T G G A T T G C G A C C C T A C G G C A C G C I A C G G G I A A G T G A C G C T G D G T G G T C D G G C G G A T T T C C C C T C 0 E023 G A G C C C A G A G T T C T G I C T A G G C G T G A T T G A A T A T G C G C G T T G A T G D T T C T T T D C T A G G T A G C C A G A G C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I A G A T A A C G C C A I A T A A T C D G G C G G G C G T C C T C C T G A G C C C G A A G A C T T G I T T A G G C A C C A C T A G A T A T A T C C G T C G A C G I C A A C G A I C G G G G T G G T C A G A C C A C G G G G C C T C G A C G T G A T G C T T T A T D A C G A T I C G A T A A C G C C A I A T A G T C D G G C G G G C G T C C T C C T END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 ? = = = = = = = = = = T = = = = T = G A = G A C ? G = = A = = = = = = C ? ? = T = G A = A = C A A C = A I ? ? ? G ? = = = = = = = = = = = T = = = = = = = = = = = = ? = = = = = = = = = = I = = = ? = = C = = ? ? A = = ? C A I A = = = = = = = = = = = A T T = = = C = T C ? = = = = = = = = = = C = = = = C = A G = C G T ? A = = G = = = = = = T ? ? = C = A G = G = T T C T = T D ? ? ? C ? = = = = = = = = = = = C = = = = = = = = = = = = ? = = = = = = = = = = D = = = ? = = A = = ? ? G = = ? T G D G = = = = = = = = = = = G C G = = = T = C T 0 D002 = = = = = = (A) (G) = = (T) = (C) = = = = = = = = = A = = = = = = ? ? = G = = = ? ? = = = = = = = = = = = = = T D = = = C = = = = = = = = G = G C T T = = A = = = = T = ? ? ? ? ? = = = ? ? ? ? ? ? C = = ? = = A = = C G = T = = T G D G = G = = ? D = = C ? G = = = = = = = = T C = = = = = = (G) (A) = = (A) = (T) = = = = = = = = = G = = = = = = ? ? = A = = = ? ? = = = = = = = = = = = = = A I = = = G = = = = = = = = A = C A C G = = G = = = = G = ? ? ? ? ? = = = ? ? ? ? ? ? A = = ? = = C = = T A = C = = C A I A = A = = ? I = = T ? A = = = = = = = = C T 0 D003 = A = ? = = = ? ? ? ? ? ? = = = T = G A = G A = C G = = A = G G G = = C G = = C = A G = G I = = = = = A I C = G = = = ? ? ? ? ? ? ? ? = = C = = ? G C = = C = A C = = = = = = = = = = = = = = C ? = = = = = = ? ? = = = = C A I A = A = = = = = = = G = = C = = = = = = C T = G = ? = = = ? ? ? ? ? ? = = = C = A G = C G = G A = = G = A T A = = T C = = T = G A = A D = = = = = T D T = A = = = ? ? ? ? ? ? ? ? = = T = = ? A T = = G = G T = = = = = = = = = = = = = = T ? = = = = = = ? ? = = = = T G D G = G = = = = = = = C = = T = = = = = = T C 0 D004 = A = C = = A G A = = T = = = = C = = G = C G T G A = = G = G = = = = = C ? = = = = = C G ? C A A C = A I = = G G = = A = = = = = = = G = = = = = ? = T G C = A C C C T A ? ? ? C A ? G C I = C G G = = = A G ? ? A = = C = = = = = = = = C = = = = G = A ? = = = = C = = = = G = G = = G A G = = C = = = = T = = A = G A C C G = = A = A = = = = = G ? = = = = = T A ? T T C T = T D = = A C = = G = = = = = = = C = = = = = ? = C T G = G T G T G T ? ? ? T T ? A T D = T A A = = = G A ? ? G = = T = = = = = = = = T = = = = C = G ? = = = = T = = = 0 D005 = = (G) = = = = (G) = = = = (C) (T) = (I) = (T) = = = = = = = = = = = = (A) = (A) (G) = = = = = (T) = (G) (A) = = = = = = = = = = = = = = = = = = (C) = = = = = = = T T = = A T T G = = = = C C T = ? = = C ? ? ? ? I = = = G G = A A G = G = = = = = = = = = = = = C = = = = G = A T T = = = ? = T C = = (T) = = = = (A) = = = = (T) (C) = (D) = (G) = = = = = = = = = = = = (G) = (G) (T) = = = = = (C) = (A) (G) = = = = = = = = = = = = = = = = = = (T) = = = = = = = C G = = G C C T = = = = G T G = ? = = T ? ? ? ? D = = = A T = C G A = A = = = = = = = = = = = = T = = = = C = G C G = = = ? = C T 0 D006 = = G = C = = = = C = = C = = I = = = = G = = C = = = = = = G = G = = = = = = C = A G = G = = = = = = = = = = = = = = = = C = = = = C = = C = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = ? = = A = = ? ? G = = = = = D = T A = T = = = = = G = = = = T C C = C C T = = T = G = = = = G = = T = = D = = = = A = = T = = = = = = A = A = = = = = = T = G A = A = = = = = = = = = = = = = = = = T = = = = G = = T = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = ? = = C = = ? ? A = = = = = I = C G = C = = = = = C = = = = C T T = T T C 0 D007 = = (G) = = = (G) = = = (A) = = = ? = = = = = = = ? ? = = = = = = A G = T = = ? ? ? = = = = = = ? = = = = = = = = = = = A = A = = = = = = G = = T T = = A T T G = = = = C C T = ? ? ? C A C G C I = = = ? G = A = = = = = = = = C A I A T A A T = = = = = G = = = = T C C = C C T = = (T) = = = (A) = = = (T) = = = ? = = = = = = = ? ? = = = = = = G T = G = = ? ? ? = = = = = = ? = = = = = = = = = = = G = G = = = = = = C = = C G = = G C C T = = = = G T G = ? ? ? T T T A T D = = = ? T = C = = = = = = = = T G D G C G G C = = = = = C = = = = C T T = T T C 0 D008 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (A) = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? ? ? ? G G = G = = = = = = = = = C T = C = = = = = = = = = = = = = G = = = = = = = = = = ? = D A = = C G = T = ? ? A I A = = = = = = = = = C = = = = C T T ? T T C = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (G) = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? ? ? ? C A = A = = = = = = = = = T G = G = = = = = = = = = = = = = A = = = = = = = = = = ? = I C = = T A = C = ? ? G D G = = = = = = = = = G = = = = T C C ? C C T 0 D009 G = T = = = = A = = = = T = ? = = = = = = = = = = = T = = = = = = ? = = = = = = = = = = = = ? = = = = = = = = = = ? ? = = = = ? ? ? ? ? ? = = = = = ? C T = T = = ? ? ? = = = = = = = = = ? C = = = T = = G A C = = T = = = = I = C = = C = = = = = C = G C G C T T ? T = = A = G = = = = G = = = = C = ? = = = = = = = = = = = C = = = = = = ? = = = = = = = = = = = = ? = = = = = = = = = = ? ? = = = = ? ? ? ? ? ? = = = = = ? T G = G = = ? ? ? = = = = = = = = = ? A = = = G = = A G T = = C = = = = D = T = = T = = = = = G = A T T T C C ? C = = 0 D010 ? ? ? ? ? ? ? ? ? = ? ? = ? ? = = = = = = = A = = = = = = = A = = = = = = = ? ? ? ? ? ? = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = C A = A = = = = = = = = = = = = T T = = ? = = = C ? ? ? ? ? ? ? ? ? = ? ? = ? ? = = = = = = = G = = = = = = = G = = = = = = = ? ? ? ? ? ? = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = T G = G = = = = = = = = = = = = C G = = ? = = = T 0 D011 ? ? ? ? ? ? ? ? ? ? ? ? ? C A = T = G A = G A C ? G = = A = A = = T = = = = ? ? = = ? = G = T ? ? ? ? ? I C = = C ? ? ? ? ? ? ? ? ? ? ? ? T T = = A T = = G = G T = = ? T = = = = = = = = = = T A = = = A = = = = = = = = = = I = C = = C = = = = = C = G C G C T T T T = = ? ? ? ? ? ? ? ? ? ? ? ? ? T G = C = A G = C G T ? A = = G = G = = G = = = = ? ? = = ? = A = C ? ? ? ? ? D T = = G ? ? ? ? ? ? ? ? ? ? ? ? C G = = G C = = C = A C = = ? A = = = = = = = = = = C G = = = C = = = = = = = = = = D = T = = T = = = = = G = A T T T C C C C = = 0 D012 ? = G = = = = A = = = C = = = = = = = = = = = = = = = = = A = = = = = = = = ? ? ? ? ? = = = = = = = = = = = = = = ? = = = T = ? ? ? ? = ? T = ? ? A = = = = T = = = = ? = = = = ? ? ? ? ? ? C = = G = I = = = = = = = = = T G = G ? ? ? ? = = = = = = = = = = T C C = C = T ? = T = = = = G = = = T = = = = = = = = = = = = = = = = = G = = = = = = = = ? ? ? ? ? = = = = = = = = = = = = = = ? = = = C = ? ? ? ? = ? C = ? ? G = = = = G = = = = ? = = = = ? ? ? ? ? ? A = = A = D = = = = = = = = = C A = A ? ? ? ? = = = = = = = = = = C T T = T = C 0 D013 = A T C = = A = A = = = T C = D C G A G = G A C C G = = A = A = = T = = C T ? ? ? ? ? ? A ? ? ? ? ? ? ? ? ? ? ? ? = = ? ? ? ? = = = = C ? T T = = A T = = G = G T = = = T = = = = = = = = = = = A = = ? A = = ? ? G = = T T G D G = = = = T = = = = = = = ? = = = = = = = C = G G G = = G = G = = = C T = I T T G A = C G T G A = = G = G = = G = = G C ? ? ? ? ? ? G ? ? ? ? ? ? ? ? ? ? ? ? = = ? ? ? ? = = = = G ? C G = = G C = = C = A C = = = A = = = = = = = = = = = G = = ? C = = ? ? A = = C C A I A = = = = C = = = = = = = ? = = = = = = = T 0 D014 (A) = = = = = = = = = = (C) = = = = = = (G) = = = = = = = = = = = (G) = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = G = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = T T = T T C (G) = = = = = = = = = = (T) = = = = = = (A) = = = = = = = = = = = (A) = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = C = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = C C = C C T 0 D015 ? ? ? ? ? ? ? ? ? ? ? ? ? C = D = G = = = = = = = = = = = = = = G ? = = = = ? ? ? ? ? = = ? ? ? ? ? ? ? ? ? ? ? G G = G = ? ? = = G C = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? A = = ? ? G = = = = = = = = A = = ? I = = T G A = = = = = = = = = = ? ? ? ? ? ? ? ? ? ? ? ? ? T = I = T = = = = = = = = = = = = = = A ? = = = = ? ? ? ? ? = = ? ? ? ? ? ? ? ? ? ? ? C A = A = ? ? = = A G = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? C = = ? ? A = = = = = = = = G = = ? D = = C C G = = = = = = = = = = 0 D016 ? = = = = = = A = C = = = C A ? T = G = = = A C C G = C = = = = G = = = = = ? ? ? ? ? = G ? ? = = = T = = = = = G A = = = ? ? = = G = G = ? = = = = ? ? = = = = = = = = = = = = = = = ? ? = ? = = = G ? A = = ? ? G = = = T G D G = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = G = G = = = T G ? C = A = = = G T G A = T = = = = A = = = = = ? ? ? ? ? = A ? ? = = = G = = = = = C G = = = ? ? = = A = C = ? = = = = ? ? = = = = = = = = = = = = = = = ? ? = ? = = = T ? C = = ? ? A = = = C A I A = = = = = = = = = = = = = = = = = = = ? ? 0 D033 G = = = = = = = = = = C = ? = = = = = = = = ? = = = = = = = = = = = = C G = = = = = = T A D T T C T = T D = = A = = = = = = = = = = G G = = G G ? = = ? = = = = = = = = = = ? = = = = ? = = = = = = = I = = = = = = = = ? C A I A = A = = = = = = = = = G C G = = = ? ? ? ? A = = = = = = = = = = T = ? = = = = = = = = ? = = = = = = = = = = = = T C = = = = = = C G I C A A C = A I = = G = = = = = = = = = = C C = = T A ? = = ? = = = = = = = = = = ? = = = = ? = = = = = = = D = = = = = = = = ? T G D G = G = = = = = = = = = A T T = = = ? ? ? ? 0 D034 (G) = = = = = = = = = = (T) = = = = = = (G) = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = A T T G = = = = C C T = C = G C A ? ? ? I = = = G G = A A G = G = = = = = = = = = (G) = = = = = = = (C) = = = = = = = = = = = (A) = = = = = = = = = = (C) = = = = = = (A) = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = G C C T = = = = G T G = T = C T T ? ? ? D = = = A T = C G A = A = = = = = = = = = (A) = = = = = = = (G) = = = = = = = = = = = 0 D035 = = G = = = = G = ? ? ? ? ? = I = T = = = = ? ? = = = = = = G = G = = = = = = C = A G = G = = = = = = = = = = = = = = G G = = ? = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = ? ? G = = = T G D G = A = = = = = = = G = = = = = = = = = C = = = T = = = = A = ? ? ? ? ? = D = G = = = = ? ? = = = = = = A = A = = = = = = T = G A = A = = = = = = = = = = = = = = A C = = ? = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = ? ? A = = = C A I A = G = = = = = = = C = = = = = = = = = T = 0 D036 (G) = (T) = = = (G) (A) = = = = = = ? = = = = = = = (A) = = = = = = = = (G) (G) = = = = = = T = G A = A D T = = = = T D = = A C = T G G = = A = = (C) = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = (C) (A) = (A) = (A) = = = = = = = (G) = = = = = = = = = (C) = (A) = (G) = = = (A) (G) = = = = = = ? = = = = = = = (G) = = = = = = = = (T) (A) = = = = = = C = A G = G I C = = = = A I = = G G = C A C = = G = = (G) = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = (T) (G) = (G) = (G) = = = = = = = (C) = = = = = = = = = (T) = 0 D037 = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = A = = = = T C = = = = = = C G I ? ? ? ? ? ? I = = G G = C = = T = = = = (C) (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = (T) (A) = = (G) = (C) (A) (I) (A) = (A) = = ? (I) = = (T) (G) (A) = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = G = = = = C G = = = = = = T A D ? ? ? ? ? ? D = = A C = T = = C = = = = (G) (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = (C) (G) = = (A) = (T) (G) (D) (G) = (G) = = ? (D) = = (C) (C) (G) = = = = = = = = = = 0 D038 = (G) (G) (G) (C) = (G) = (G) = = = (C) (T) = (I) ? = (A) = (G) = (G) = (G) (A) = (T) = (A) = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T T = = = = = G = = = = C = T = C = G C A C G C I = = = G = = A A G = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) (T) (C) (G) = (A) = (A) = = = (T) (C) = (D) ? = (G) = (A) = (A) = (C) (G) = (C) = (G) = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C G = = = = = T = = = = G = G = T = C T T T A T D = = = A = = C G A = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 D039 = (A) (T) (C) = = = = (A) = = = = = ? = = = = = = = (G) = = = (T) = = (G) = (T) = = = ? (G) (C) = (C) = (A) (G) = (G) = = = = = = = = = = = C = = ? ? ? ? = = A G = A T = = G A T T G = = = = C C T = C G G C A C G C I = = = G G I = A G T = = C = = = = D = = = = = = = = = = G = A T T = = = ? = = C = (G) (G) (G) = = = = (G) = = = = = ? = = = = = = = (A) = = = (C) = = (A) = (G) = = = ? (C) (T) = (T) = (G) (A) = (A) = = = = = = = = = = = G = = ? ? ? ? = = G C = C C = = C G C C T = = = = G T G = T A C T T T A T D = = = A T D = G A C = = T = = = = I = = = = = = = = = = C = G C G = = = ? = = T 0 D040 = = (G) = (C) = = (G) = = = (T) (C) (T) = (I) ? = (A) = (G) = (G) = (G) (A) (T) (T) = = = = = = = (T) = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = C C = C G = = G C C ? = = = = G T G = T = C T T T A T D = = = A T = C G A = A = = = ? C A I A = A = = = = G G = G = = = = T C C = C C T = = (T) = (G) = = (A) = = = (C) (T) (C) = (D) ? = (G) = (A) = (A) = (C) (G) (C) (C) = = = = = = = (C) = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = G G = T T = = A T T ? = = = = C C T = C = G C A C G C I = = = G G = A A G = G = = = ? T G D G = G = = = = C A = C = = = = C T T = T T C 0 E001 G = T = = = = A = = = = T C A = = = = = = = = = = = = = = = A = ? = G C G = = = T = = T = D ? T C ? ? ? D = T A G = = A = = = = T = = = C T = G ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C A I A = A = = = = = = = = = = = = = = = ? = = = A = G = = = = G = = = = C T G = = = = = = = = = = = = = = = G = ? = A T C = = = C = = C = I ? A A ? ? ? I = G G C = = G = = = = G = = = A C = A ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G D G = G = = = = = = = = = = = = = = = ? = = = 0 E002 = = G = = C = G = = = T C T G = = = G = = = = = = = = = = = G = = = = T C = = T = G A C = = = = = = = = = = = = = = = = = C = = = = = = = = = A ? ? ? ? = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = ? = A T T T C = C C = = = = T = = T = A = = = C T C A = = = A = = = = = = = = = = = A = = = = C G = = C = A G T = = = = = = = = = = = = = = = = = T = = = = = = = = = G ? ? ? ? = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = ? = G C G C T = T T = = 0 E003 (G) = (T) = = (T) = (A) = ? ? ? (T) (C) (A) = = = = = = = = = = = = = = = = = = (G) = (C) (G) = = = = = = (T) (A) (D) ? ? ? ? ? ? (D) = = (A) (C) = = = ? ? ? (G) = = = (G) = T T = = A T T G = = = = C C T = C = G C A C G C I = = = ? G = A A G = G = = = = T G D G = G = = = = = = = = = A T T = = = C = T C (A) = (G) = = (C) = (G) = ? ? ? (C) (T) (G) = = = = = = = = = = = = = = = = = = (T) = (T) (C) = = = = = = (C) (G) (I) ? ? ? ? ? ? (I) = = (G) (G) = = = ? ? ? (A) = = = (C) = C G = = G C C T = = = = G T G = T = C T T T A T D = = = ? T = C G A = A = = = = C A I A = A = = = = = = = = = G C G = = = T = C T 0 E004 (G) = (T) = = = = (A) = = = = (T) = = = = = = = = = = = = = = = = = = = = (G) = = = = (A) (T) = (G) (A) = (A) (D) (T) = = = = (T) (D) = = (A) (C) = (T) (G) (G) = = (A) = = G G = ? ? = = A T T G = = = = C C T = C = G C A C G C I = = = G G = A = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = (A) = (G) = = = = (G) = = = = (C) = = = = = = = = = = = = = = = = = = = = (T) = = = = (G) (C) = (A) (G) = (G) (I) (C) = = = = (A) (I) = = (G) (G) = (C) (A) (C) = = (G) = = C C = ? ? = = G C C T = = = = G T G = T = C T T T A T D = = = A T = C = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = 0 E005 (A) = = = = = = = = = = (C) = = = = = = (A) = = = = = = = = = = = = = = = = (T) (C) = (G) = = = = (C) (G) (I) ? ? ? ? ? ? (I) = = (G) (G) = = = = (T) = = = = C C = C G = = G C C T = = = = G T G = T = C T ? ? A T D = = = A T = C G A = A = = = = C A I A = A = = = = = = = = = G C G = = = T = C T (G) = = = = = = = = = = (T) = = = = = = (G) = = = = = = = = = = = = = = = = (C) (G) = (A) = = = = (T) (A) (D) ? ? ? ? ? ? (D) = = (A) (C) = = = = (C) = = = = G G = T T = = A T T G = = = = C C T = C = G C ? ? G C I = = = G G = A A G = G = = = = T G D G = G = = = = = = = = = A T T = = = C = T C 0 E006 (G) = = = = = = = = = = (T) = = = = = = (G) = = = = = = = = = = = = = = = = = (G) = = = = = = = = = C ? ? ? ? ? I = = G G = C A C = = G = = C C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = (C) = = (T) (A) = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = (C) = = = = = = (A) = = = = = = = = = = = = = = = = = (C) = = = = = = = = = T ? ? ? ? ? D = = A C = T G G = = A = = G G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = (A) = = (C) (G) = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E007 = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = T ? ? = = G C = A G = G I ? ? ? ? ? ? I = = G G = C A C = T ? ? ? ? C C T ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A ? ? C G = = A = = = = = = = = = = = = = = ? ? A T T T C = = C = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = G ? ? = = A T = G A = A D ? ? ? ? ? ? D = = A C = T G G = C ? ? ? ? G A C ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C ? ? T A = = G = = = = = = = = = = = = = = ? ? G C G C T = = T = = 0 E008 = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = ? G = ? ? ? ? ? ? = = = T C T = = = = = = = = C A C = = = = = C C = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = ? C = ? ? ? ? ? ? = = = A A C = = = = = = = = T G G = = = = = G G = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = 0 E009 = = = = = = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = T = T C = = = = = = C G I C A A C = A I = = G G = = = = = = = = = (C) = = = = (A) (C) = = = = = = = = = = = = = (A) = = = = = = = = = = = = (D) = = = = = = = = = = = = = = = = = = = = = = = = (G) (C) (G) = = = (T) = (C) (T) = = = = = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = G = C G = = = = = = T A D T T C T = T D = = A C = = = = = = = = = (G) = = = = (G) (G) = = = = = = = = = = = = = (G) = = = = = = = = = = = = (I) = = = = = = = = = = = = = = = = = = = = = = = = (A) (T) (T) = = = (C) = (T) (C) 0 E010 = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C G = ? = ? ? = = = = = = = = = = = = = = = = = = = = = = = I = = = ? ? = = = = C A I A = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T T = ? = ? ? = = = = = = = = = = = = = = = = = = = = = = = D = = = ? ? = = = = T G D G = = A = = = = = = = = = = = = = = = = = = 0 E011 = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = (T) = (T) (C) = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = T T = = A T T G = = = = C C T = C = G C A ? G C I = = = G G = A A G = G = = = = T G D G = G = = = = = = = = = A T T = = = C = T C = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = (G) = (C) (G) = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = (C) = = C G = = G C C T = = = = G T G = T = C T T ? A T D = = = A T = C G A = A = = = = C A I A = A = = = = = = = = = G C G = = = T = C T 0 E012 = = = = = = A G = = T T C = = = C = G = = = ? T G A = = G A G = = = = C G = = C = A G T = = = T C T = = = = = = = = C A C C T G = = = = = = = A C = = = = = = = = = = = = = A = = = = = = = = = = ? = D = = = = = = = = = = = = = ? ? ? ? = = = = = C = = = = = = = = = T = = = = = = = G A = = A C T = = = T = A = = = ? C C G = = A G A = = = = T C = = T = G A C = = = A A C = = = = = = = = T G G T C A = = = = = = = G G = = = = = = = = = = = = = G = = = = = = = = = = ? = I = = = = = = = = = = = = = ? ? ? ? = = = = = G = = = = = = = = = C = 0 E013 = = = = = = = (G) = = = (T) (C) (T) (G) = = = (G) = = = = = = = = = = = = = = (G) = (C) (G) = = = = = = (T) (A) (D) (T) (T) (C) (T) = (T) (D) = = (A) (C) = = (G) (G) = = (A) = = = = = T T = = A ? T G = = = = ? C T = C = G C A ? G C I = = = G G I A A G = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = (C) (T) (C) (A) = = = (A) = = = = = = = = = = = = = = (T) = (T) (C) = = = = = = (C) (G) (I) (C) (A) (A) (C) = (A) (I) = = (G) (G) = = (A) (C) = = (G) = = = = = C G = = G ? C T = = = = ? T G = T = C T T ? A T D = = = A T D C G A = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E014 = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C C = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G C G = = = T = ? ? = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G G = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A T T = = = C = ? ? 0 E015 = = = = = = = (G) = = = = (C) = ? = = = (A) = = = = = ? = = = = = A = = T G = = = = T T G A = = ? ? ? ? ? ? ? ? ? ? ? G = = A = = = = = = G = = = = = = = = = = = = = = = = ? = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = (A) = = = = (T) = ? = = = (G) = = = = = ? = = = = = G = = G A = = = = C C A G = = ? ? ? ? ? ? ? ? ? ? ? C = = G = = = = = = C = = = = = = = = = = = = = = = = ? = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = 0 E016 G = = = = = = = = = = T = = = = = = G = = = = = ? = = = = = = = = = = C G = ? ? ? ? ? ? = = = T C T = = = = = = = = C A C = T ? ? ? ? C = = = A C = = = = = = = = = = = = = A = = = = = = = = = = = = D = = = = = = = = = C A I A = A = = = = = = = = = G C G = = = T = C T A = = = = = = = = = = C = = = = = = A = = = = = ? = = = = = = = = = = T C = ? ? ? ? ? ? = = = A A C = = = = = = = = T G G = C ? ? ? ? G = = = G G = = = = = = = = = = = = = G = = = = = = = = = = = = I = = = = = = = = = T G D G = G = = = = = = = = = A T T = = = C = T C 0 E017 ? = = = = = = = = = = (T) = = = = = = (G) = = = = = = = = = = = = = = (G) ? ? (G) = = (C) = (A) (G) (T) = = = (T) (C) (T) = = = = = = C = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = C G A = A = = = = = = = = = A = = = = G G = G = = = = T C C = C C T ? = = = = = = = = = = (C) = = = = = = (A) = = = = = = = = = = = = = = (T) ? ? (C) = = (T) = (G) (A) (C) = = = (A) (A) (C) = = = = = = G = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = A A G = G = = = = = = = = = G = = = = C A = C = = = = C T T = T T C 0 E018 (G) = (T) = = (T) = (A) = = = = (T) (C) (A) = = = (A) = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = T T = = ? ? ? G = = = = C C T = C = G C A ? G C ? = = = G = = A A G = G = = = = = = = = = = = = = = C A = C = G C G C T T T T = = (A) = (G) = = (C) = (G) = = = = (C) (T) (G) = = = (G) = = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = C G = = ? ? ? T = = = = G T G = T = C T T ? A T ? = = = A = = C G A = A = = = = = = = = = = = = = = G G = G = A T T T C C C C = = 0 E019 (A) = (G) = = (C) = (G) = ? ? ? ? (T) (G) = = = = = = = = = = = = = = = (G) = = (G) = = = = = = (T) = = (T) = (D) (T) (T) (C) (T) (T) (T) (D) = (T) (A) (G) = = (A) = = = = T = = = C = = = ? G C C T = = = = G T G = T = C T T ? A ? ? = = = A ? = = G A C = = = A = C A I A = A = = = = G G = G = = = = T C C = C C T (G) = (T) = = (T) = (A) = ? ? ? ? (C) (A) = = = = = = = = = = = = = = = (A) = = (T) = = = = = = (C) = = (C) = (I) (C) (A) (A) (C) (G) (A) (I) = (G) (G) (C) = = (G) = = = = G = = = A = = = ? A T T G = = = = C C T = C = G C A ? G ? ? = = = G ? = = A G T = = = G = T G D G = G = = = = C A = C = = = = C T T = T T C 0 E020 = = = = = = = = = = = = = = = ? (C) = = (G) = (C) (G) ? (G) (A) = = (G) (A) (G) = = = = = (G) = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? = ? = A ? ? G = = = = C C T = C = G C A ? G C ? = = = G G = A A G = G = = = = T G D G = G = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = ? (T) = = (A) = (G) (A) ? (C) (G) = = (A) (G) (A) = = = = = (C) = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? = ? = G ? ? T = = = = G T G = T = C T T ? A T ? = = = A T = C G A = A = = = = C A I A = A = = = = = = = = = = = = = = = ? = = = 0 E021 ? = = = = = = = = = = (T) = = = = = = (G) = = = = = = = = = = = = = = G = C = = = = = = = C G I C A A C = A I = = G G = = A = C = ? ? ? ? = = ? = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G D G = G = = = = = = = = = A T T = = = C = T C ? = = = = = = = = = = (C) = = = = = = (A) = = = = = = = = = = = = = = T = T = = = = = = = T A D T T C T = T D = = A C = = G = T = ? ? ? ? = = ? = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C A I A = A = = = = = = = = = G C G = = = T = C T 0 E022 = = G = = C = G = = = T C = = = = = = = = = = = = = = = = ? = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = T = A = = = C T = = = = = = = = = = = = = = = = ? = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = 0 E023 = = = = = = A G = = T T C = = = C = = = = = G T ? = T = G ? = = = = G C G = = = T = = T = D T T C T T T D = T A = = = A = C = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = G A = = A C T = = = T = = = = = A C ? = C = A ? = = = = A T C = = = C = = C = I C A A C G A I = G G = = = G = T = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS ? = = = = = = = = = = 1.00 = = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 ? 1.00 = = 1.00 = = = = = = 1.00 ? ? = 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 ? ? ? 1.00 ? = = = = = = = = = = = 1.00 = = = = = = = = = = = = ? = = = = = = = = = = 1.00 = = = ? = = 1.00 = = ? ? 1.00 = = ? 1.00 1.00 1.00 1.00 = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 = = = = = = 0.68 0.68 = = 0.68 = 0.68 = = = = = = = = = 1.00 = = = = = = ? ? = 1.00 = = = ? ? = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 = = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = ? ? ? ? ? = = = ? ? ? ? ? ? 1.00 = = ? = = 1.00 = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 = = ? 1.00 = = 1.00 ? 1.00 = = = = = = = = 1.00 1.00 = 0.99 = ? = = = ? ? ? ? ? ? = = = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = = ? ? ? ? ? ? ? ? = = 1.00 = = ? 1.00 1.00 = = 1.00 = 1.00 1.00 = = = = = = = = = = = = = = 1.00 ? = = = = = = ? ? = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = 1.00 = = 1.00 = = = = = = 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = = = = = 1.00 ? = = = = = 1.00 1.00 ? 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 = = = = = = = 1.00 = = = = = ? = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? ? ? 1.00 1.00 ? 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 ? ? 1.00 = = 1.00 = = = = = = = = 1.00 = = = = 1.00 = 1.00 ? = = = = 1.00 = = = = = 0.52 = = = = 0.52 = = = = 0.52 0.52 = 0.52 = 0.52 = = = = = = = = = = = = 0.50 = 0.50 0.50 = = = = = 0.50 = 0.50 0.50 = = = = = = = = = = = = = = = = = = 0.52 = = = = = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = ? = = 1.00 ? ? ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = 0.95 = = = = 0.95 = 0.95 0.95 0.95 = = = ? = 0.95 0.95 = = 1.00 = 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 = = = = = = 1.00 = 1.00 = = = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = ? = = 1.00 = = ? ? 1.00 = = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 0.76 = = = 0.76 = = = 0.76 = = = ? = = = = = = = ? ? = = = = = = 1.00 1.00 = 1.00 = = ? ? ? = = = = = = ? = = = = = = = = = = = 1.00 = 1.00 = = = = = = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = ? ? ? 1.00 1.00 1.00 1.00 1.00 1.00 = = = ? 1.00 = 1.00 = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 0.78 = = = = = = = = = = = = = = ? ? ? ? ? ? ? ? ? ? ? 1.00 1.00 = 1.00 = = = = = = = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = = 1.00 = = = = = = = = = = ? = 1.00 1.00 = = 1.00 1.00 = 1.00 = ? ? 1.00 1.00 1.00 = = = = = = = = = 1.00 = = = = 1.00 1.00 1.00 ? 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = 1.00 = ? = = = = = = = = = = = 1.00 = = = = = = ? = = = = = = = = = = = = ? = = = = = = = = = = ? ? = = = = ? ? ? ? ? ? = = = = = ? 1.00 1.00 = 1.00 = = ? ? ? = = = = = = = = = ? 1.00 = = = 1.00 = = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = 1.00 = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 ? 1.00 = = ? ? ? ? ? ? ? ? ? = ? ? = ? ? = = = = = = = 1.00 = = = = = = = 1.00 = = = = = = = ? ? ? ? ? ? = ? ? = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = 1.00 1.00 = = ? = = = 1.00 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 ? 1.00 = = 1.00 = 1.00 = = 1.00 = = = = ? ? = = ? = 1.00 = 1.00 ? ? ? ? ? 1.00 1.00 = = 1.00 ? ? ? ? ? ? ? ? ? ? ? ? 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 1.00 = = ? 1.00 = = = = = = = = = = 1.00 1.00 = = = 1.00 = = = = = = = = = = 1.00 = 1.00 = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = ? = 1.00 = = = = 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = ? ? ? ? ? = = = = = = = = = = = = = = ? = = = 1.00 = ? ? ? ? = ? 1.00 = ? ? 1.00 = = = = 1.00 = = = = ? = = = = ? ? ? ? ? ? 1.00 = = 1.00 = 1.00 = = = = = = = = = 1.00 1.00 = 1.00 ? ? ? ? = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 = = 1.00 = 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 = = 1.00 = = 1.00 1.00 ? ? ? ? ? ? 1.00 ? ? ? ? ? ? ? ? ? ? ? ? = = ? ? ? ? = = = = 1.00 ? 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 1.00 = = = 1.00 = = = = = = = = = = = 1.00 = = ? 1.00 = = ? ? 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = = = = = = = ? = = = = = = = 1.00 0.56 = = = = = = = = = = 0.56 = = = = = = 0.64 = = = = = = = = = = = 0.56 = = 0.85 = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = 1.00 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 ? ? ? ? ? ? ? ? ? ? ? ? ? 1.00 = 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 ? = = = = ? ? ? ? ? = = ? ? ? ? ? ? ? ? ? ? ? 1.00 1.00 = 1.00 = ? ? = = 1.00 1.00 = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? 1.00 = = ? ? 1.00 = = = = = = = = 1.00 = = ? 1.00 = = 1.00 1.00 1.00 = = = = = = = = = = ? = = = = = = 1.00 = 1.00 = = = 1.00 1.00 ? 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = = ? ? ? ? ? = 1.00 ? ? = = = 1.00 = = = = = 1.00 1.00 = = = ? ? = = 1.00 = 1.00 = ? = = = = ? ? = = = = = = = = = = = = = = = ? ? = ? = = = 1.00 ? 1.00 = = ? ? 1.00 = = = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = ? ? 1.00 = = = = = = = = = = 1.00 = ? = = = = = = = = ? = = = = = = = = = = = = 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = = = = = = = = = = 1.00 1.00 = = 1.00 1.00 ? = = ? = = = = = = = = = = ? = = = = ? = = = = = = = 1.00 = = = = = = = = ? 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = 1.00 1.00 1.00 = = = ? ? ? ? 0.63 = = = = = = = = = = 0.64 = = = = = = 0.65 = = = = = = = = = = = = = = 0.67 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.90 = = = = = = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 ? ? ? 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = = = = = = = 0.63 = = = = = = = 0.63 = = = = = = = = = = = = = 1.00 = = = = 1.00 = ? ? ? ? ? = 1.00 = 1.00 = = = = ? ? = = = = = = 1.00 = 1.00 = = = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 1.00 = = ? = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = ? ? 1.00 = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = 1.00 = = = = = = = = = 1.00 = 0.63 = 0.62 = = = 0.62 0.62 = = = = = = ? = = = = = = = 0.63 = = = = = = = = 0.69 0.69 = = = = = = 0.98 = 0.98 0.98 = 0.98 0.98 0.98 = = = = 0.98 0.98 = = 0.98 0.98 = 0.98 0.98 0.98 = = 0.98 = = 0.83 = 0.50 = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = 0.70 0.70 = 0.70 = 0.70 = = = = = = = 0.70 = = = = = = = = = 0.70 = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = 1.00 = = = = 1.00 1.00 = = = = = = 1.00 1.00 1.00 ? ? ? ? ? ? 1.00 = = 1.00 1.00 = 1.00 = = 1.00 = = = = 0.71 0.71 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.71 = = 0.71 0.71 = = 0.71 = 0.71 0.71 0.71 0.71 = 0.71 = = ? 0.71 = = 0.71 0.71 0.71 = = = = = = = = = = = 0.50 0.50 0.50 0.50 = 0.50 = 0.50 = = = 0.50 0.50 = 0.50 ? = 0.50 = 0.50 = 0.50 = 0.50 0.50 = 0.50 = 0.52 = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.97 0.97 = = = = = 1.00 = = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.56 0.56 0.56 = = = = 0.55 = = = = = ? = = = = = = = 0.66 = = = 0.66 = = 0.84 = 0.84 = = = ? 0.84 0.84 = 0.84 = 0.84 0.84 = 0.84 = = = = = = = = = = = 1.00 = = ? ? ? ? = = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = = = ? = = 1.00 = = 0.54 = 0.54 = = 0.54 = = = 0.54 0.54 0.54 = 0.54 ? = 0.54 = 0.54 = 0.54 = 0.54 0.54 0.54 0.54 = = = = = = = 0.77 = = ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 ? = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = ? 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = = 1.00 = ? = 1.00 1.00 1.00 = = = 1.00 = = 1.00 = 1.00 ? 1.00 1.00 ? ? ? 1.00 = 1.00 1.00 1.00 = = 1.00 = = = = 1.00 = = = 1.00 1.00 = 1.00 ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = ? = = = = = 1.00 = = 1.00 = 1.00 = = = 1.00 1.00 1.00 1.00 = = = 0.97 = = = = = = = = = = = 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = 1.00 ? ? ? ? = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = ? = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 0.62 = 0.62 = = 0.62 = 0.62 = ? ? ? 0.62 0.62 0.62 = = = = = = = = = = = = = = = = = = 0.62 = 0.62 0.62 = = = = = = 0.62 0.62 0.62 ? ? ? ? ? ? 0.62 = = 0.62 0.62 = = = ? ? ? 0.62 = = = 0.62 = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = ? 1.00 = 1.00 1.00 1.00 = 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 0.63 = 0.63 = = = = 0.63 = = = = 0.63 = = = = = = = = = = = = = = = = = = = = 0.80 = = = = 0.80 0.80 = 0.80 0.80 = 0.80 0.80 0.80 = = = = 0.80 0.80 = = 0.80 0.80 = 0.80 0.80 0.80 = = 0.80 = = 1.00 1.00 = ? ? = = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = 0.57 = = = = = = = = = = 0.57 = = = = = = 0.57 = = = = = = = = = = = = = = = = 0.57 0.57 = 0.73 = = = = 0.77 0.77 0.77 ? ? ? ? ? ? 0.77 = = 0.77 0.77 = = = = 0.77 = = = = 0.93 0.93 = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 ? ? 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 0.59 = = = = = = = = = = 0.59 = = = = = = 0.60 = = = = = = = = = = = = = = = = = 0.70 = = = = = = = = = 1.00 ? ? ? ? ? 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = 0.69 = = 0.69 0.69 = = 0.69 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = 1.00 ? ? = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 ? ? ? ? ? ? 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 ? ? ? ? 1.00 1.00 1.00 ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 ? ? 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = ? ? 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = ? 1.00 = ? ? ? ? ? ? = = = 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 1.00 = = = = = 1.00 0.93 = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.82 = = = = = = = = = = = = = = 1.00 = 1.00 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = = = = = = = 0.82 = = = = 0.72 0.72 = = = = = = = = = = = = = 0.72 = = = = = = = = = = = = 0.72 = = = = = = = = = = = = = = = = = = = = = = = = 0.58 0.58 0.58 = = = 0.58 = 0.58 0.58 = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = ? = ? ? = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = ? ? = = = = 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = 0.60 = 0.60 0.54 = 0.52 = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.89 = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 ? 1.00 1.00 1.00 = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = = 0.98 0.98 0.98 0.98 = 0.98 = = = = = = = = = 0.98 0.98 0.98 = = = 0.98 = 0.98 0.98 = = = = = = 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = 1.00 = = = ? 1.00 1.00 1.00 = = 1.00 1.00 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = 1.00 1.00 = = = = = = = = = = = = = 1.00 = = = = = = = = = = ? = 1.00 = = = = = = = = = = = = = ? ? ? ? = = = = = 1.00 = = = = = = = = = 1.00 = = = = = = = = 0.57 = = = 0.57 0.57 0.57 0.57 = = = 0.57 = = = = = = = = = = = = = = 0.63 = 0.63 0.63 = = = = = = 0.63 0.63 0.63 0.63 0.63 0.63 0.63 = 0.63 0.63 = = 0.63 0.63 = = 0.57 0.57 = = 0.57 = = = = = 0.96 0.96 = = 1.00 ? 1.00 1.00 = = = = ? 1.00 1.00 = 1.00 = 1.00 1.00 1.00 ? 1.00 1.00 1.00 = = = 1.00 1.00 0.90 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = ? ? = = = = = = = 0.58 = = = = 0.58 = ? = = = 0.89 = = = = = ? = = = = = 1.00 = = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = = ? ? ? ? ? ? ? ? ? ? ? 1.00 = = 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = ? = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = 1.00 = = = = = = 1.00 = = = = = ? = = = = = = = = = = 1.00 1.00 = ? ? ? ? ? ? = = = 1.00 1.00 1.00 = = = = = = = = 1.00 1.00 1.00 = 1.00 ? ? ? ? 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 1.00 = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 ? = = = = = = = = = = 0.62 = = = = = = 0.61 = = = = = = = = = = = = = = 0.81 ? ? 0.87 = = 0.87 = 0.87 0.87 0.87 = = = 0.87 0.87 0.87 = = = = = = 0.95 = = = = 0.95 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 1.00 1.00 1.00 = 1.00 = = = = = = = = = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 0.60 = 0.60 = = 0.60 = 0.60 = = = = 0.60 0.60 0.60 = = = 0.68 = = = = = = = = = = = = = = 0.78 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 = = ? ? ? 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 ? 1.00 1.00 ? = = = 1.00 = = 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 0.55 = 0.55 = = 0.55 = 0.55 = ? ? ? ? 0.55 0.55 = = = = = = = = = = = = = = = 0.52 = = 0.50 = = = = = = 0.89 = = 0.89 = 0.89 0.89 0.89 0.89 0.89 0.89 0.89 0.89 = 0.89 0.89 0.89 = = 0.89 = = = = 1.00 = = = 1.00 = = = ? 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 ? 1.00 ? ? = = = 1.00 ? = = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = = = = = = = = = = = ? 0.77 = = 0.77 = 0.77 0.77 ? 0.77 0.77 = = 0.77 0.77 0.77 = = = = = 0.51 = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = ? = ? = 1.00 ? ? 1.00 = = = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 1.00 ? 1.00 1.00 ? = = = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = ? = = = ? = = = = = = = = = = 0.78 = = = = = = 0.78 = = = = = = = = = = = = = = 1.00 = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 = ? ? ? ? = = ? = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 = = 0.99 = 1.00 = = = 1.00 1.00 = = = = = = = = = = = = = = = = ? = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = ? = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = = = = 1.00 1.00 ? = 1.00 = 1.00 ? = = = = 1.00 1.00 1.00 = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 = 1.00 = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = END PHASEPROBS