************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 il2rb.phase.inp il2rb.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST il2rb.phase.out_freqs : haplotype frequency estimates il2rb.phase.out_pairs : most likely haplotype pairs for each individual il2rb.phase.out_recom : estimates of recombination parameters il2rb.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 107 Positions of loci: 1426 2000 2014 2121 2329 2445 2586 2686 2689 3074 3764 3781 4175 4736 4939 5063 5106 5125 5335 5808 5921 6214 6817 6976 7226 7742 7751 7811 7952 8431 8611 8655 9093 9425 9685 9881 10216 10998 11167 11452 11475 11618 11876 11999 12212 12912 13151 13160 13416 13660 13803 13878 14181 14247 14281 14432 14505 14691 14774 14856 14978 15091 15425 15510 15657 15829 16317 16614 16684 16863 17024 17148 17222 17598 18254 18340 18370 18376 18398 18584 18712 18848 18906 18920 18930 20417 20587 21066 21215 21437 21576 21626 21738 22327 22854 22902 23225 23254 23918 24181 24949 25735 25975 26051 26092 26156 26189 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file il2rb.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 ACACTCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACCATCAAACCCGAAAAGACGIT 2.000000 2 ACACTCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACCGCCGGGCCCCAAAGGCGGIT 1.000000 3 ACACTCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGAGGIT 2.000000 4 ACACTCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCGCCGGACCCCAAAAAAGGIT 3.000000 5 ACACTCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGTGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCGCCGGACCCCAAAAAAGGIT 1.000000 6 ACACTCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCT 1 CCGAACAGATGCCGTCTGACTAGGCTAATCTCCTGGCGTCGCCAAAACCCAAAAGAGGDT 1.000000 7 ACACTCACDGTCCCCTCTGDDTGCAGCGTCACTGACICCTGGCTTC 3 CCGGGCAGGCGTCACCTGAGTAGGCCGACTTCATGGTATCGCCGGGCTCCAAAAAAGGDT 1.000000 8 ACACTCACDGTCCCCTCTGDDTGTAGCATTATCAACITCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGCCGATCTCCTGGCGCCGTCAAGCCCCCGCAGCGGIT 1.000000 9 ACACTCACDGTCCCCTCTGDDTGTAGCACCACCGACICCTACTTCT 3 CCGAACAGATGCCGCCTGACTCGGCTGACTTCATGGTATCGTCAAGCCTCAAAAGACGIT 1.000000 10 ACACTCACDGTCCCCTCTGDDTGTAGCGTCACCGACICCTACTCCC 3 CCGAACAGATGCCGCCTGACTAGGCCGACTTCATGGTATCGCTGGACCTCCGAAGACGDG 1.000000 11 ACACTCACDGTCCCCTCTGDDTGTAGCGTCGCCGACICCTGGTTCT 3 CCGAACAGATGCCGCCTGACTAGGCTAATCTCCTAGCGCCATCAAACCCGAAAAGACGIT 1.000000 12 ACACTCACDGTCCCCTCTGDDTGTAGCGTCGCCGACICCTGGTTCT 3 CCCGGCAGGCGTCGCGCGGCTCGGCCGACTTCAAGGTACCGCCGGGCCCCAAAGGCGGIT 1.000000 13 ACACTCACDGTCCCCTCTGDDTGTAGCGTTACCGACICCTGGTTCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGAGGIT 1.000000 14 ACACTCACDGTCCCCTCTGDDTGTAGCGCCACCGACICCTGGTTCC 3 CCGAGCGGGCGTCGCGCGGCTCGGCCGACTTCATGGTATCGCTGGACCTCCGCAGAGGDT 1.000000 15 ACACTCACDGTCCCCTCTGDDTGTAGCGCCACCGACICCTGGTTCT 3 CCCGGCAGGCGTCGCGCGGCTCGACCGCCTCCATGGTATCGCCGGACCCCAAAAGCGGIT 1.000000 16 ACACTCACDGTCCCCTCTGDDTGTAGCGCCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 2.000000 17 ACACTCACDGTCCCCTCTGDDTGTAGCGCTATCAACITCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGCCGATCTCCTGGCGCCGTCAAGCCCCCGCAGAGGDT 1.000000 18 ACACTCACDGTCCTCACTGDDTGCAGCATCACCAAGITCTGGTCCC 2 GCGAGCGAGCATCGCCCGGCTCGGCCGACTTCATGGTACCGTCAAGCCTCCGCAGAGGDT 1.000000 19 ACACTCACDGTCCTCACTGDDTGCAGCATCGCCGACICCTGGTTCT 3 CCGAACAGATGCCGCCTGACTAGGCTAATCTCCTAGCGCCGCCGGACCCCAAAAAAGGIT 1.000000 20 ACACTCACDGTCTTTACCGIDCGCAGCATCGCCGACICCTGGTTCT 3 CCCGGCAGGCGTCGCGCGGCTCGGCCGACTTCAAGGTACCGCCGGGCCCCAAAGGCGGIT 1.000000 21 ACACTCACDGTCTTTAGCGIDCGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACCATCAAACCCGAAAAGACGIT 1.000000 22 ACACTCACDGTCTTTAGCGIDCGCGCTATCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCGCCAGGACCCAAAAGAGGDT 1.000000 23 ACACTCACDGTCTTTAGCGIDCGCGCTATCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCGCCGGGACCCAAAAGAGGDT 2.000000 24 ACACTCACDGTCTTTAGCGIDCGCGCTATCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCGCCGGGACCCAAAAGCGGIT 3.000000 25 ACACTCACDGTCTTTAGCGIDCGCGCTGTCGCCGACICCTGCTTCT 3 CCGAACGAGCATCGCCCAGCTCGACCGCCTCAATGCTACTATCAAACCCGAAAAGACGDG 1.000000 26 ACACTCACDGTTTTTAGCGIDCGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGAGGIT 2.000000 27 ACACTCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACCATCAAACCCGAAAAGACGIT 1.000000 28 ACACTCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGACCTCATGGCACCATCAAACCCGAAAAGCGGIT 1.000000 29 ACGCCCACDGTCCCCTCTGDDTGCAGCGTTATCGACITCTGGTCCC 2 GCGAGCGGGCGTCGCGCGGCTCGGCCGACTTCATGGTATCGCTGGACCTCCGCAGAGGDT 1.000000 30 ACGCCCACDCTCCCCTCTGDDTACAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 31 AAGCCCACDGTCCCCTCTGDDTGCAGCGTCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTACCGCCGGACCCCAAAAAAGGIT 2.000000 32 AAGCCCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACCATCAAACCCGAAAAGACGIT 1.000000 33 AAGCCCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGCGGIT 1.000000 34 AAGCCCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GGGAGCGAGCGTCGCCCGACTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 35 AAGCCCACDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCCGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGAGGIT 1.000000 36 AAGCCCACDGTCCCCTCTGDDTGCAGCGTCGCCGACICCTGGTTCT 3 CCGAACAGATGCCGCCTGACTAGGCTAATCTCCTAGCGCCATCAAACCCGAAAAGAGGIT 1.000000 37 AAGCCCACDGTCTTTAGCGIDCGCGCTATCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCGCCGGGCCCCAAAAGAGGDT 1.000000 38 AAGCCCACDGTTTTTAGCGIDCGCAGCATCGCCGACICCTGGTTCT 3 CCGAACAGATGCCGCCTGACTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 39 AAGCCCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 40 AAGCCCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGCGGIT 1.000000 41 AAGCCCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GGGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 42 AAGCCCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GGGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGDT 2.000000 43 AAGCCCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GGGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGCGCIT 1.000000 44 AAGCCCACDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GGGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGACGIT 1.000000 45 AAGCCCACDGCCCCCTCTGDDTGCACTATCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCGCCGGGACCCAAAAGCGGIT 1.000000 46 AAGCCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCCGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 47 TCGCCCACICTCTCTAGCGIDCGCAGCGTCACCGACICCTGGTTCT 3 CCGAACAGATGCCGCCTGACTAGGCTGATCTCCTGGTGCCGCCAAGCCCCCACAGCGCIT 1.000000 48 TCGCCCGCIGTCCTCACTGDDTACAGCGTCACTGACICCTGGCTTC 3 CCGAGCGGATGCCGCCTGACTAGGCTAATCTCCTAGCGCCGTCAAACCCGAAAAGACGIT 1.000000 49 TCGCCCGCICTCCTTACCGDITGCAGCACTACCGACICCTGGTTCT 1 CCGAACAGATGCCGTCTGACTAGGCTAATCTCCTGGCGTCGCCGGGACCCAAAAGAGGDT 1.000000 50 TCGCCCGCICTCCTTACCTDITGCAGCATCGCCGACICCTGCTTCT 3 CCGAACGAGCATCGCCCAGCTCGACCGCCTCAATGCTACTATCAAACCCGAAAAGACGIG 1.000000 51 TCGCCCGCICTCCTTACCTDITGCAGCATCGCCGACICCTGCTTCT 3 CCGAACGAGCATCGCCCAGCTCGACCGCCTCAATGCTACTATCAAACCCGAAAAGACGIT 2.000000 52 TCGCCCGCICTCCTTACCTDITGCAGCATCGCCGACICCTGCTTCT 3 CCGAACGAGCATCGCCCAGCTCGACCGCCTCAATGCTACTATCAAACCCGAAAAGACGDG 1.000000 53 TCGCCCGCICTCCTTACCTDITGCACTATCACTGACICCTGGCTTC 3 CCGGGCAGGCGTCACCTGAGTAGGCCGACTTCATGGTATCGCCGGGCTCCAAAAAAGGDT 1.000000 54 TCGCCCGCICTCTTTAGCGIDCGCAGCGTCACCGACICCTACTCCC 3 CCGAACAGATGCCGCCTGACTAGGCCGACTTCAAGGTATCGCCGGACCTCAACAGCGGDT 1.000000 55 TCGCCCGCDGTCCCCTCTGDDTACACTATCACTGACICCTGGCTTC 3 CCGGGCAGGCGTCACCTGAGTAGGCCGACTTCATGGTATCGCCGGGCTCCAAAAAAGGDT 1.000000 56 TCGTCCGTDGTCCCCTCCGDITGCAGCACTACCGACICCTGGTTCT 1 CCGAACAGATGCCGTCTGACTAGGCTAATCTCCTGGCGTCGCCGGGACCCAAAAGAGGDT 1.000000 57 TCGTCCGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 58 TCGTCCGTDGTTTTTAGCGIDCGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGACTTCATGGCACTATCAAACCCGAAAAGACGIT 1.000000 59 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCATCAAACCCGAAAAGCGGIT 2.000000 60 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACCATCAAACCCGAAAAGACGIT 2.000000 61 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 62 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGCGGIT 2.000000 63 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGCGGIT 2.000000 64 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GCGAGTGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGCGGIT 1.000000 65 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GGGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 2.000000 66 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAAGDTCCGGTCCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 67 TCGTCTGTDGTCCCCTCTGDDTGCAGCGTCACCAGGDTCTGGTCCC 2 GCGAGCGAGCGTCGCCCGGCCCGGTCGATCTCCTAGCGCCATCAAACCCGAAAAGAGGIT 1.000000 68 TCGTCTGTDGTCCCCTCTGDDTACAGCGTCACCGACICCTGGTTCT 3 CCCGGCAGGCGTCGCGCGGCTCGGCCGACTTCAAGGTACCGCCGGGCCCCAAAGGCGGIT 1.000000 69 TCGTCTGTDGTCCTCACTGDDCGCAGCACCACCGGCICTTACTTCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACCATCAAACCCGAAAAGCGGIT 2.000000 70 TCGTCTGTDGTCCTCACTGDDCGCAGCACCACCGGCICTTACTTCC 2 GCGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGAGGDT 1.000000 71 TCGTCTGTDGTCCTCACTGDDCGCAGCGCCGCCGACICCTGCTTCT 3 CCGAACGAGCATCGCCCGGCTCGACCGCCTCCATGGTACCGTCAAGCCTCCGCAGAGGIT 1.000000 72 TCGTCTGTDGTCTTTAGCGIDCGCACTATCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCGCCGGAACCCAAAAGAGGDT 1.000000 73 TCGTCTGTDGTCTTTAGCGIDCGCACTATCACCGACICCTACTTCT 3 CCGAGCAGGCGTAGCCTGACTCAGCTGACTTCATGGTATCGCCGGGACCCAAAAGAGGDT 2.000000 74 TCGTCTGTDGCCCCCTCTGDDTGCAGCGTCACCAAGDTCTGGTCCC 2 GGGAGCGAGCGTCGCCCGGCTCGGTCGACTTCATGGTACTATCAAACCCGAAAAGACGIT 1.000000 75 TCGTCTGTDGCCCCCTCTGDDTGCAGCGTCGCCGACICCTGGTTCT 2 GCGAACAGATGCCGCCTGACTAGGCTAATCTCCTAGCGCCATCAAACCCGAAAAGACGIT 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (10,51) D002: (55,18) D003: (17,70) D004: (68,3) D005: (6,13) D006: (29,69) D007: (24,61) D008: (30,49) D009: (11,56) D010: (3,62) D011: (12,48) D012: (16,69) D013: (47,8) D014: (1,60) D015: (38,50) D016: (4,7) D033: (2,71) D034: (9,43) D035: (57,20) D036: (25,37) D037: (16,53) D038: (14,54) D039: (15,51) D040: (52,67) E001: (33,40) E002: (24,26) E003: (19,73) E004: (27,59) E005: (4,72) E006: (31,63) E007: (32,73) E008: (44,45) E009: (39,66) E010: (42,46) E011: (4,34) E012: (21,41) E013: (22,63) E014: (1,65) E015: (5,42) E016: (24,26) E017: (23,62) E018: (58,75) E019: (60,64) E020: (23,36) E021: (65,74) E022: (31,28) E023: (35,59) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 A C A C T C A C D G T C C C C T C T G D D T G T A G C G T C A C C G A C I C C T A C T C C C 3 C C G A A C [A] G A T G C C G C C T G A C T [A] G G C C G A C T T C A T G G T A T C G C T G G A C C T C C G A A G A C G D G T C G C C C G C I C T C C T T A C C T D I T G C A G C A T C G C C G A C I C C T G C T T C T 3 C C G A A C G A G C A T C G C C C A G C T C G A C C G C C T C A A T G C T A C T A T C A A A C C C G A A A A G A C G I T 0 D002 (T) C (G) C (C) C (G) C D G T C C C C T C T G D D T A C A C T A T C A C T G A C I C C T G G C T T C 3 C C G G G C A G G C G T C A C C T G A G T A G G C C G A C T T C A T G G T A T C G C C G G G C T C C A A A A A A G G D T (A) C (A) C (T) C (A) C D G T C C T C A C T G D D T G C A G C A T C A C C A A [G] I T C T G G T C C C 2 G C G A G C G A G C A T C G C C C G G C T C G G C C G A C T T C A T G G T A C C G T C A A G C C T C C G [C] A G A G G D T 0 D003 A C A C T C A C D G T C C C C T C T G D D T G T A G C G C T A T C A A C I T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G C C G A T C T C C T G G C G C C G T C A A G C C C C C G C A G [A] G G D T T C G T C T G T D G T C C T C A C T G D D C G C A G C A C C A C C G G C I C T T A C T T C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A G G D T 0 D004 (T) C (G) (T) (C) (T) (G) (T) D G T C C C C T C T G D D T (A) C A G C G T C A C C G A C I C C T G G T T C T 3 C C C G G C A G G C G T C G C G C G G C T C G G C C G A C T T C A A G G T A C C G C C G G G C C C C A A A G G C G G I T (A) C (A) (C) (T) (C) (A) (C) D G T C C C C T C T G D D T (G) C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G A G G I T 0 D005 A C A C T C A C D G T C C C C T C T G D D T G (C) A G C G T C A C C A A G D T C T G G T C C T 1 C C G A A C A G A T G C C G T C T G A C T A G G C T A A T C T C C T G G C G T C G C C A A A A C C C A A A A G A G G D T A C A C T C A C D G T C C C C T C T G D D T G (T) A G C G T T A C C G A C I C C T G G T T C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G A G G I T 0 D006 (A) C G (C) C (C) (A) (C) D G T C C C C T C T G D D T G C A G C G T T A T C G A C I T C T G G T C C C 2 G C G A G C G G G C G T C G C G C G G C T C G G C C G A C T T C A T G G T A T C G C T G G A C C T C C G C A G A G G D T (T) C G (T) C (T) (G) (T) D G T C C T C A C T G D D C G C A G C A C C A C C G G C I C T T A C T T C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C C A T C A A A C C C G A A A A G C G G I T 0 D007 A C A C T C A C D G T C T T T A G C G I D C G C G C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G C G G I T T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T 0 D008 (A) C G C C C [A] C (D) C T C C (C) (C) (T) C T G D D T A C A G C G (T) C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A [C] G I T (T) C G C C C [G] C (I) C T C C (T) (T) (A) C C G D I T G C A G C A (C) T A C C G A C I C C T G G T T C T 1 C C G A A C A G A T G C C G T C T G A C T A G G C T A A T C T C C T G G C G T C G C C G G G A C C C A A A A G A G G D T 0 D009 (A) C (A) (C) (T) C (A) (C) D G T C C C C T C T G D D T G T A G C G [T] C [G] C C G A C I C C T G G T T C T 3 C C G A A C A G A T G C C G C C T G A C T A G G C T A A T C T C C T A G C G C C A T C A A A C C C G A A A A G A C G I T (T) C (G) (T) (C) C (G) (T) D G T C C C C T C C G D I T G C A G C A [C] T A C C G A C I C C T G G T T C T 1 C C G A A C A G A T G C C G T C T G A C T A G G C T A A T C T C C T G G C G T C G C C G G G A C C C A A A A G A G G D T 0 D010 (A) C (A) (C) (T) (C) (A) (C) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G (A) G G I T (T) C (G) (T) (C) (T) (G) (T) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G (C) G G I T 0 D011 (A) C (A) C (T) C [A] C (D) [G] T C C (C) C (T) C T G D D T (G) (T) A G C G T C G C C G A C I C C T G G T T C T 3 C C C G G C A G G C G T C G C G C G G C T C G G C C G A C T T C A A G G T A C C G C C G G G C C C C A A A G G C G G I T (T) C (G) C (C) C [G] C (I) [G] T C C (T) C (A) C T G D D T (A) (C) A G C G T C A C T G A C I C C T G G C T T C 3 C C G A G C G G A T G C C G C C T G A C T A G G C T A A T C T C C T A G C G C C G T C A A A C C C G A A A A G A C G I T 0 D012 A C A C T C A C D G T C C C C T C T G D D T G T A G C G C C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T T C G T C T G T D G T C C T C A C T G D D C G C A G C A C C A C C G G C I C T T A C T T C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C C A T C A A A C C C G A A A A G C G G I T 0 D013 (T) C (G) C (C) C [A] C (I) (C) T C (T) [C] (T) (A) (G) (C) G (I) D (C) G (C) A G C (G) T C A C C G A C I C C T G G T T C T 3 C C G A A C A G A T G C C G C C T G A C T A G G C T G A T C T C C T G G T G C C G C C A A G C C C C C A C A G C G C I T (A) C (A) C (T) C [A] C (D) (G) T C (C) [C] (C) (T) (C) (T) G (D) D (T) G (T) A G C (A) T T A T C A A C I T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G C C G A T C T C C T G G C G C C G T C A A G C C C C C G C A G C G G I T 0 D014 A C A C T C A C D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C C A T C A A A C C C G A A A A G A C G I T T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C C A T C A A A C C C G A A A A G A C G I T 0 D015 A A G C C C A C D G T T T T T A G C G I D C G C A G C A T C G C C G A C I C C T G G T T C T 3 C C G A A C A G A T G C C G C C T G A C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I (T) T C G C C C G C I C T C C T T A C C T D I T G C A G C A T C G C C G A C I C C T G C T T C T 3 C C G A A C G A G C A T C G C C C A G C T C G A C C G C C T C A A T G C T A C T A T C A A A C C C G A A A A G A C G I (G) 0 D016 A C A C T C A C D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G [C] G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C G C C G G A C C C C A A A A A A G G I T A C A C T C A C D G T C C C C T C T G D D T G C A G C G T C A C T G A C I C C T G G C T T C 3 C C G G G C A G G C G T C A C C T G A G T A G G C C G A C T T C A T G G T A T C G C C G G G C T C C A A A A A A G G D T 0 D033 (A) C (A) (C) (T) (C) (A) (C) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G [T] C G A C T T C A [T] G G T A C C G C C G G G C C C C A A A G G C G G I T (T) C (G) (T) (C) (T) (G) (T) D G T C C T C A C T G D D C G C A G C G C C G C C G A C I C C T G C T T C T 3 C C G A A C G A G C A T C G C [C] C G G C T C G A C C G C C T C C A T G G T A C C G T C A A G C C T C C G C A G A G G I T 0 D034 A (C) (A) C (T) C A C D G T C C C C T C T G D D T G T A G C A C C A C C G A C I C C T A C T T C T 3 C C G A A C A G A T G C C G C C T G A C T C G G C T G A C T T C A T G G T A T C G T C A A G C C T C A A A A G A C G I T A (A) (G) C (C) C A C D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G G G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G C G C I T 0 D035 (T) C (G) (T) (C) C (G) (T) D G T [C] (C) (C) (C) (T) C (T) G (D) D (T) G C A G C (G) T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T (A) C (A) (C) (T) C (A) (C) D G T [C] (T) (T) (T) (A) C (C) G (I) D (C) G C A G C (A) T C G C C G A C I C C T G G T T C T 3 C C C G G C A G G C G T C G C G C G G C T C G G C C G A C T T C A A G G T A C C G C C G G G C C C C A A A G G C G G I T 0 D036 A (C) (A) C (T) C A C D G T C T T T A G C G I D C G C G C T (G) T C G C C G A C I C C T G C T T C T 3 C C G A A C G A G C A T C G C C C A G C T C G A C C G C C T C A A T G C T A C T A T C A A A C C C G A A A A G A C G D G A (A) (G) C (C) C A C D G T C T T T A G C G I D C G C G C T (A) T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G C C C [C] A A A A G A G G D T 0 D037 A C A C T C A C D G T C C C C T C T G D D T G T A G C G [C] C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T T C G C C C G C I C T C C T T A C C T D I T G C A C T A T C A C T G A C I C C T G G C T T C 3 C C G G G C A G G C G T C A C C T G A G T A G G C C G A C T T C A T G G T A T C G C C G G G C T C C A A A A A A G G D T 0 D038 (A) C (A) C (T) C (A) C (D) (G) T C (C) (C) (C) (T) (C) (T) G (D) D (T) G (T) A G C G (C) C A C C G A C I C C T (G) (G) T (T) C C 3 C C G A (G) C (G) G (G) (C) G (T) C G C (G) (C) G (G) C T (C) G G C C G A C T T C A (T) G G T A T C G C (T) G G A C C T C (C) (G) C A G (A) G G D T (T) C (G) C (C) C (G) C (I) (C) T C (T) (T) (T) (A) (G) (C) G (I) D (C) G (C) A G C G (T) C A C C G A C I C C T (A) (C) T (C) C C 3 C C G A (A) C (A) G (A) (T) G (C) C G C (C) (T) G (A) C T (A) G G C C G A C T T C A (A) G G T A T C G C (C) G G A C C T C (A) (A) C A G (C) G G D T 0 D039 A C A C T C A C D G T C C C C T C T G D D T G T A G C G C C A C C G A C I C C T G G T T C T 3 C C C G G C A G G C G T C G C G C G G C T C G A C C G C C T C [C] A T G (G) T A (T) (C) (G) (C) C (G) (G) A C C C (C) A A A A G (C) (G) G I T T C G C C C G C I C T C C T T A C C T D I T G C A G C A T C G C C G A C I C C T G C T T C T 3 C C G A A C G A G C A T C G C C C A G C T C G A C C G C C T C A A T G (C) T A (C) (T) (A) (T) C (A) (A) A C C C (G) A A A A G (A) (C) G I T 0 D040 T C G C C C G C I C T C C T T A C C T D I T G C A G C A T C G C C G A C I C C T G C T T C T 3 C C G A A C G A G C A T C G C C C A G C T C G A C C G C C T C A A T G C T A C T A T C A A A C C C G A A A A G A C G D G T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A G G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G A G G I T 0 E001 A A G C C C A C D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G C G G I T A A G C C C A C D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G C G G I T 0 E002 A C A C T C A C D G T C T T T A G C G I D C G C G C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G C G G I T A C A C T C A C D G T T T T T A G C G I D C G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G A G G I T 0 E003 (A) C (A) (C) (T) (C) (A) (C) D G T C C T C A C T G D D T G C A G C A T C G C C G A C I C C T G G T T C T [3] C C G A A C A G A T G C C G C C T G A C T A G G C T A A T C T C C T A G C G C C G C C G G A C C C C A A A A A A G G I T (T) C (G) (T) (C) (T) (G) (T) D G T C T T T A G C G I D C G C A C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G A G G D T 0 E004 (A) C (A) (C) (T) (C) (A) (C) D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C C A T C A A A C C C G A A A A G A C G I T (T) C (G) (T) (C) (T) (G) (T) D G T C C C C T C T G D D T G C A G C G T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C A T C A A A C C C G A A A A G C G G I T 0 E005 (A) C (A) (C) (T) (C) (A) (C) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C G C C G G A C C C C A A A A A A G G I T (T) C (G) (T) (C) (T) (G) (T) D G T C T T T A G C G I D C G C A C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G A A C C C A A A A G A G G D T 0 E006 [A] (A) G (C) C (C) (A) (C) D G T C C C C T C T G D D T G C A G C G T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A C C (G) (C) C (G) (G) A C C C (C) A A A A (A) (A) G G I T [T] (C) G (T) C (T) (G) (T) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C (A) (T) C (A) (A) A C C C (G) A A A A (G) (C) G G I T 0 E007 (A) (A) G (C) C (C) (A) (C) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C [C] A T C A A A C C C G A A A A G A C G I T (T) (C) G (T) C (T) (G) (T) D G T C T T T A G C G I D C G C A C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G A G G D T 0 E008 A A G C C C A C D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G G G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G (A) (C) G I T A A G C C C A C D G C C C C C T C T G D D T G C A C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G (C) (G) G I T 0 E009 A A G C C C A C D G (C) C C C C T C T G D D T G C A G C G T C A C C A A G D T C (T) G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T T C G T C T G T D G (T) C C C C T C T G D D T G C A G C G T C A C C A A G D T C (C) G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T 0 E010 A A G C C C A C D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G G G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G D T A A G C C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C C G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T 0 E011 A (C) (A) C (T) C A C D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G (G) C C C G G T C G A T C T C C T A G C G C C G C C G G A C C C C A A A A A A G G I T A (A) (G) C (C) C A C D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G G G A G C G A G C G T C G C C C G (A) C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A C G I T 0 E012 A (C) (A) C (T) C A C D G T C T T T A G C G I D C G C A G C G T C A C C A A G D T C T G G T C C C 2 G (C) G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C (C) A T C A A A C C C G A A A A G A C G I T A (A) (G) C (C) C A C D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G (G) G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C (T) A T C A A A C C C G A A A A G A C G I T 0 E013 (A) C (A) (C) (T) (C) (A) (C) D G T C T T T A G C G I D C G C G C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C A G G A C C C A A A A G A G G D T (T) C (G) (T) (C) (T) (G) (T) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G C G G I T 0 E014 A C A C T C A C D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G (C) G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C (C) A T C A A A C C C G A A A A G A C G I T T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G (G) G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C (T) A T C A A A C C C G A A A A G A C G I T 0 E015 A C A C T C A C D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G T G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C G C C G G A C C C C A A A A A A G G I T A A G C C C A C D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G G G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A [C] G D T 0 E016 A C A C T C A C D G T C T T T A G C G I D C G C G C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G C G G I T A C A C T C A C D G T T T T T A G C G I D C G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G A G G I T 0 E017 A C A C T C A C D G T C T T T A G C G I D C G C G C T A T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G (A) G G (D) T T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G (C) G G (I) T 0 E018 T C G T C (C) G T D G (T) (T) (T) (T) (T) (A) (G) (C) G (I) D (C) G C A G C G T C (A) C C (A) A (G) (D) (T) C T G G T (C) C (C) 2 G C G A G C G A G C G T C G C C C G G C C C G G T C G A (C) (T) T C (A) T (G) G C (A) C (T) A T C A A A C C C G A A A A G A C G I T T C G T C (T) G T D G (C) (C) (C) (C) (C) (T) (C) (T) G (D) D (T) G C A G C G T C (G) C C (G) A (C) (I) (C) C T G G T (T) C (T) 2 G C G A A C A G A T G C C G C C T G A C T A G G C T A A (T) (C) T C (C) T (A) G C (G) C (C) A T C A A A C C C G A A A A G A C G I T 0 E019 T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C C A T C A A A C C C G A A A A G A C G I T T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G T G A G C G T C G C C C G G C C C G G T C G A T C T C C T A G C G C C A T C A A A C C C G A A A A G C G G I T 0 E020 A (C) (A) C [T] C A C D G T C (T) (T) (T) (A) (G) (C) G (I) D (C) G C (G) (C) (T) (A) T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C G C C G G G A C C C A A A A G A G G D T A (A) (G) C C C A C D G T C (C) (C) (C) (T) (C) (T) G (D) D (T) G C (A) (G) (C) (G) T C G C C G A C I C C T G G T T C T 3 C C G A A C A G A T G C C G C C T G A C T A G G C T A A T C T C C T A G C G C C A T C A A A C C C G A A A A G A G G I T 0 E021 T C G T C T G T D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G G G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C [T] A T C A A A C C C G A A A A G A C G I T T C G T C T G T D G C C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G G G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C [T] A T C A A A C C C G A A A A G A C G I T 0 E022 A (A) (G) C (C) C A C D G (T) C C C C T C T G D D T G C A G C G T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C (T) T C A T G G T A C C (G) (C) C (G) (G) A C C C (C) A A A A (A) (A) G G I T A (C) (A) C (T) C A C D G (C) C C C C T C T G D D T G C A G C G T C A C C A A G D T C T G G T C C C 2 G C G A G C G A G C G T C G C C C G G C [C] C G G T C G A C (C) T C A T G G C A C C (A) (T) C (A) (A) A C C C (G) A A A A (G) (C) G G I T 0 E023 (A) (A) G (C) C (C) (A) (C) D G T C C C C T C T G D D T G C A G C G T C A C C A A G D T C C G G T C C C 2 G C G A G C G A G C G T C G C C C G G C T C G G T C G A C T T C A T G G T A C T A T C A A A C C C G A A A A G A G G I T (T) (C) G (T) C (T) (G) (T) D G T C C C C T C T G D D T G C A G C G T C A C C G A C I C C T A C T T C T 3 C C G A G C A G G C G T A G C C T G A C T C A G C T G A C T T C A T G G T A T C A T C A A A C C C G A A A A G C G G I T END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 A = A = T = A = D ? = = = C C T = T G ? D ? = T = = = G = ? ? ? = = = = = = = = A = = C = C = = = = = = = ? G A T G C = = = = T G A = ? ? ? ? ? ? = A = = T C = = = G = = T C G C T ? ? = = = T C C G = = = = ? ? D G T = G = C = G = I ? = = = T T A = C T ? I ? = C = = = A = ? ? ? = = = = = = = = G = = T = T = = = = = = = ? A G C A T = = = = C A G = ? ? ? ? ? ? = C = = C A = = = C = = C T A T C ? ? = = = C G A A = = = = ? ? I T 0 D002 (T) = (G) = (C) = (G) = = = = = = ? = T = = = = = = A = = C T = = = = = T G = ? = C = = = = C T T = 3 C = = ? ? ? ? ? = = G = = A = = T = A G = A = = = = = = = = = = = = = = = = T = ? ? = G G = = T C = A A ? = A = = = = = (A) = (A) = (T) = (A) = = = = = = ? = A = = = = = = G = = G C = = = = = C A = ? = T = = = = T C C = 2 G = = ? ? ? ? ? = = A = = G = = C = G C = C = = = = = = = = = = = = = = = = C = ? ? = A A = = C T = C G ? = G = = = = = 0 D003 A = A C T C A C = = = = = C = T = = = = = T = T = = = G = T = T = A A = = T C = G G = C = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = T C = = C = = = C G = C G = = = = G = = = C C G C = = ? = = = = T = G T C T G T = = = = = T = A = = = = = C = C = = = A = C = C = G G = = C T = A C = T = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = C T = = A = = = T A = T A = = = = A = = = G A A A = = ? = = = = 0 D004 (T) = (G) (T) (C) (T) (G) (T) = = = = = = = = = = = = = = (A) = = = = = = = = = = G = ? I C = = = = = T = T 3 C = C G = = A G = = = = = = = G = = = = T = = = C = = = C T = = A A G = T A = = G C = G G G = = = C = = = G = C = = = = (A) = (A) (C) (T) (C) (A) (C) = = = = = = = = = = = = = = (G) = = = = = = = = = = A = ? D T = = = = = C = C 2 G = G A = = G A = = = = = = = C = = = = C = = = T = = = T C = = C T A = C G = = A T = A A A = = = G = = = A = A = = = = 0 D005 = = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = C = = = A = G ? T = = = = = C = T 1 C = = = A = A G A T = C = = T ? T = A = T A = ? C T A = = = = = = = G = = = ? = G C = = = = A = = C = = = = = = = ? D = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = T = = = G = C ? C = = = = = T = C 2 G = = = G = G A G C = T = = C ? C = G = C C = ? T C G = = = = = = = A = = = ? = A T = = = = C = = G = = = = = = = ? I = 0 D006 (A) = = (C) = (C) (A) (C) = = = = = ? ? T = = = = = T = = = = = G T T = T = = A = = T C = G G = C = = = = = = = = = = G = = = = = = = G = = = = = = = = C = = = = = = = = = = = = = T = G C T G G = = = T C C G C = = A = = D = (T) = = (T) = (T) (G) (T) = = = = = ? ? A = = = = = C = = = = = A C C = C = = G = = C T = A C = T = = = = = = = = = = A = = = = = = = C = = = = = = = = T = = = = = = = = = = = = = C = A T C A A = = = C G A A A = = C = = I = 0 D007 A = A C T C A C = = = = T T T A G C = I = C = = G C T A = = = = = G = C I C = = A C = T = T 3 C = = = = = A G = = = = A = = = T = A = = = A = C T = = = = = = = = = = = = T C G C = G G G A = = C = = = = = C G = = = T = G T C T G T = = = = C C C T C T = D = T = = A G C G = = = = = A = G D T = = G G = C = C 2 G = = = = = G A = = = = C = = = C = G = = = G = T C = = = = = = = = = = = = C T A T = A A A C = = G = = = = = A C = = = 0 D008 (A) = = = = = ? = (D) = = = = (C) (C) (T) = T = = D = A = = = = G (T) C = = = A = G D T = = = = = C = C 2 G = = = G = G A G C = T = = C = C = G = = C = = ? C G = C T = = A = = = T A C T A T = A A A C = = G = = = ? = = ? = I = (T) = = = = = ? = (I) = = = = (T) (T) (A) = C = = I = G = = = = A (C) T = = = G = C I C = = = = = T = T 1 C = = = A = A G A T = C = = T = T = A = = A = = ? T A = T C = = C = = = C G T C G C = G G G A = = C = = = ? = = ? = D = 0 D009 (A) = (A) (C) (T) = (A) (C) = = = = = ? ? = = T = ? D = = T = = = G ? ? ? ? = = = = = = = = = = = = ? = 3 = = = = = = = = = = = = = = C = = = = = ? ? ? = = = = = = = = = = = A = = = ? ? A T = A A ? C ? ? G = = = = = = C ? I = (T) = (G) (T) (C) = (G) (T) = = = = = ? ? = = C = ? I = = C = = = A ? ? ? ? = = = = = = = = = = = = ? = 1 = = = = = = = = = = = = = = T = = = = = ? ? ? = = = = = = = = = = = G = = = ? ? G C = G G ? A ? ? C = = = = = = G ? D = 0 D010 (A) = (A) (C) (T) (C) (A) (C) = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? = = = C = = = = = = = T C = = C = A = C G = C = = = = = = = = = = = = = = = (A) = = = = (T) = (G) (T) (C) (T) (G) (T) = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? = = = T = = = = = = = C T = = A = G = T A = T = = = = = = = = = = = = = = = (C) = = = = 0 D011 (A) = (A) = (T) = ? = (D) ? = = = (C) = (T) = = = = = = (G) (T) = = = = = = G = C = = = = = = = = = T = C T = = = C G = = A = G C = T = = = G C = G = = C = = = C G = C T = = A A G = T A = = = C = G G G = = = C = = = G = C G = = = (T) = (G) = (C) = ? = (I) ? = = = (T) = (A) = = = = = = (A) (C) = = = = = = A = T = = = = = = = = = C = T C = = = G A = = G = A T = C = = = C T = A = = A = = = T A = T C = = C T A = C G = = = T = A A A = = = G = = = A = A C = = = 0 D012 A = A C T C A C = = = = = C = T = = = = = T = ? ? = = G = = = = = A A G D T C = G G = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = T = = = = = = = = = = = = = = = A C = = = T = G T C T G T = = = = = T = A = = = = = C = ? ? = = A = = = = = G G C I C T = A C = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = C = = = = = = = = = = = = = = = C G = = = 0 D013 (T) = (G) = (C) ? ? = (I) (C) = = (T) ? (T) (A) (G) (C) = (I) = (C) = (C) = = = (G) = C = C = G = = = C = = = = = T = T 3 C = = = A = ? G A T = C = = = = T = A = = A = = = T = = = = = = = = = = T = ? ? = C = ? ? = = = = = = A = = = = = C = = (A) = (A) = (T) ? ? = (D) (G) = = (C) ? (C) (T) (C) (T) = (D) = (T) = (T) = = = (A) = T = T = A = = = T = = = = = C = C 2 G = = = G = ? A G C = T = = = = C = G = = C = = = C = = = = = = = = = = C = ? ? = T = ? ? = = = = = = G = = = = = G = = 0 D014 A = A C T C A C = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = T = G T C T G T = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = 0 D015 A A = = = = A = D G = T T = = = G = G I D C = = = = = = = = = = = = = = = = = = = G = = = = = ? ? = = = = A G A T G C = = = = T G A = = = = G T = = A = = T C = = = G = = = = = = ? = = = = = = = = = = = = = = = = (T) T C = = = = G = I C = C C = = = C = T D I T = = = = = = = = = = = = = = = = = = = C = = = = = ? ? = = = = G A G C A T = = = = C A G = = = = A C = = C = = C A = = = C = = = = = = ? = = = = = = = = = = = = = = = = (G) 0 D016 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C A = G D T = = = = T C C = 2 G = = A = ? ? ? = = = = = G = = C = G C C C = = T = = = T C = = C = A = C G C = = = = = = A = C = = = = ? = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G = C I C = = = = C T T = 3 C = = G = ? ? ? = = = = = A = = T = A G T A = = C = = = C T = = A = G = T A T = = = = = = G = T = = = = ? = = = ? ? ? ? 0 D033 (A) = (A) (C) (T) (C) (A) (C) = = = = = C = T = = = = = T ? ? = = = = T ? ? ? = A = G D ? = = = G = C = ? ? ? = = = G = = = = = G = = = = ? ? = = = ? ? ? ? ? = = A = = T = = ? = = = = = = = C ? G G = = = C = A A A G = C = = = = (T) = (G) (T) (C) (T) (G) (T) = = = = = T = A = = = = = C ? ? = = = = C ? ? ? = G = C I ? = = = C = T = ? ? ? = = = A = = = = = A = = = = ? ? = = = ? ? ? ? ? = = C = = C = = ? = = = = = = = T ? A A = = = T = C G C A = A = = = = 0 D034 = (C) (A) = (T) = = = = = T = = ? ? = = = = = = = = T = = = A C = = = = G = C I C = = A C = T = T 3 C C = = A = A G A T = C = = = ? ? ? A = = = = = C T = = = = = = = ? = = = = T C G = = = = G = = T C = = = = = A C G = = = (A) (G) = (C) = = = = = C = = ? ? = = = = = = = = C = = = G T = = = = A = G D T = = G G = C = C 2 G G = = G = G A G C = T = = = ? ? ? G = = = = = T C = = = = = = = ? = = = = C T A = = = = A = = C G = = = = = C G C = = 0 D035 (T) = (G) (T) (C) = (G) (T) = = ? ? (C) (C) (C) (T) = (T) = (D) = (T) ? ? = = = (G) = = A = = A = G D T = = = = = C = C ? ? = G A = = G A = = = = = = = C = = = = = = = = T = = = = = = = = T = = = = = T A T = A A A = = = G = = = A = A C = = = (A) = (A) (C) (T) = (A) (C) = = ? ? (T) (T) (T) (A) = (C) = (I) = (C) ? ? = = = (A) = = G = = G = C I C = = = = = T = T ? ? = C G = = A G = = = = = = = G = = = = = = = = C = = = = = = = = A = = = = = C G C = G G G = = = C = = = G = C G = = = 0 D036 = (C) (A) = (T) = = = = = = = = = = = = = = = = = = = = = = (G) = = G = = = = = = = = = G = = = = = = = = = = A = G A = = A = C = = = C ? G = = = ? A = C = C = = C A = = = C = = C T A T = A A A = = = ? ? = = = = = C = = G = (A) (G) = (C) = = = = = = = = = = = = = = = = = = = = = = (A) = = A = = = = = = = = = A = = = = = = = = = = G = A G = = G = A = = = T ? A = = = ? G = T = A = = T C = = = G = = T C G C = G G G = = = ? ? = = = = = G = = T 0 D037 A = A = T = A = D G = = ? C C T = T G = D = ? T = G C G ? = = = C A = G D T = = = = T C C = 2 G = = A = = G A = = = = = G = = C ? G C = C = = T = = = = = = = = = = = = = ? T A T = A A A = C = G = = = = G = C = I = T = G = C = G = I C = = ? T T A = C T = I = ? C = C T A ? = = = T G = C I C = = = = C T T = 3 C = = G = = A G = = = = = A = = T ? A G = A = = C = = = = = = = = = = = = = ? C G C = G G G = T = C = = = = A = G = D = 0 D038 (A) = (A) = (T) = (A) = (D) (G) = = (C) (C) (C) (T) (C) (T) = (D) = (T) = (T) = = = = (C) = = = = = = = = = = = (G) (G) = (T) = = = = = = = (G) = (G) = (G) (C) = (T) = = = (G) (C) = (G) = = (C) = = = = = = = = = = = (T) = = = = = = = = (T) = = = = = = = (C) (G) = = = (A) = = = = (T) = (G) = (C) = (G) = (I) (C) = = (T) (T) (T) (A) (G) (C) = (I) = (C) = (C) = = = = (T) = = = = = = = = = = = (A) (C) = (C) = = = = = = = (A) = (A) = (A) (T) = (C) = = = (C) (T) = (A) = = (A) = = = = = = = = = = = (A) = = = = = = = = (C) = = = = = = = (A) (A) = = = (C) = = = = 0 D039 A = A = T = A = D G = = = C C T = T G = D = = T = = = G C = A = = = = = = = = = = G = = = = = = = C G G = A G = = G = = = = G = G = = = = = = = = = = = = = ? = = = (G) = = (T) (C) (G) (C) = (G) (G) = = = = (C) = = = = = (C) (G) = = = T = G = C = G = I C = = = T T A = C T = I = = C = = = A T = G = = = = = = = = = = C = = = = = = = G A A = G A = = A = = = = C = A = = = = = = = = = = = = = ? = = = (C) = = (C) (T) (A) (T) = (A) (A) = = = = (G) = = = = = (A) (C) = = = 0 D040 = = = C = C ? C I C = = = T T A = C T = I = = = = = = A = = G = = G A C I C = = = C = T = T 3 C = = = A = = = = = A = = = = = = A = = ? = = A C = = C C T ? A A = G C T A = T = = = = = = = = = = = = ? = = = ? ? D G = = = T = T ? T D G = = = C C T = T G = D = = = = = = G = = A = = A G G D T = = = G = C = C 2 G = = = G = = = = = G = = = = = = G = = ? = = G T = = A T C ? C C = A G C G = C = = = = = = = = = = = = ? = = = ? ? I T 0 E001 = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = ? ? = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = ? ? = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E002 = = = = = = = = = = = C = ? ? = = = = = = = = = G C T A = = = = = G = C I C = = A ? = T = T 3 C = = = = ? ? ? = = = = A = = = T = A = T = A = C T = = C T = = A = G = T A T = G C = G G G ? ? = C = = = = = C = = = = = = = = = = = = = = = T = ? ? = = = = = = = = = A G C G = = = = = A = G D T = = G ? = C = C 2 G = = = = ? ? ? = = = = C = = = C = G = C = G = T C = = T C = = C = A = C G C = A T = A A A ? ? = G = = = = = A = = = = 0 E003 (A) = (A) (C) (T) (C) (A) (C) = = = = C = C = C T = D = T = = = G C = = = G = = = = = = = = = G G = = = ? ? ? = = = A = = = A T = C C = = = = = = = = A G = = = A = T C = = C = A = C G C = = = = = = A C = = = = = = = A = = = I = (T) = (G) (T) (C) (T) (G) (T) = = = = T = T = G C = I = C = = = C T = = = A = = = = = = = = = A C = = = ? ? ? = = = G = = = G C = T A = = = = = = = = C A = = = G = C T = = A = G = T A T = = = = = = G A = = = = = = = G = = = D = 0 E004 (A) = (A) (C) (T) (C) (A) (C) = = C = = = = = = = = = = = = ? ? = = = = = = = = A = G D T = = G G = C = C 2 G = = = = = G A = = = = C = = = C ? G = = = G = T C = = = = = = = = = = = = C = = = = = = = = = = = = = = = = A C = = = (T) = (G) (T) (C) (T) (G) (T) = = T = = = = = = = = = = = = ? ? = = = = = = = = G = C I C = = A C = T = T 3 C = = = = = A G = = = = A = = = T ? A = = = A = C T = = = = = = = = = = = = T = = = = = = = = = = = = = = = = C G = = = 0 E005 (A) = (A) (C) (T) (C) (A) (C) = = = = C C C T C T = D = T = = = G C G = = = = = A = G D T = = G G = C = C 2 G = = = = = ? A = = = = C = = = C = G = C = G = T C = = T C = = C = A = C G ? ? = = = = = = C = = = = = = = A = = ? I = (T) = (G) (T) (C) (T) (G) (T) = = = = T T T A G C = I = C = = = C T A = = = = = G = C I C = = A C = T = T 3 C = = = = = ? G = = = = A = = = T = A = T = A = C T = = C T = = A = G = T A ? ? = = = = = = A = = = = = = = G = = ? D = 0 E006 ? (A) = (C) = (C) (A) (C) = = = = = ? ? = = = = = = = = = = = = = = = = = = G = C I C = = A C = T = T 3 C = = = = = ? ? = = = = A = = = T ? A = ? = ? = C T = = C T = = A = G = T A = = (G) (C) = (G) (G) = = = = (C) = = = = (A) (A) = = = = ? (C) = (T) = (T) (G) (T) = = = = = ? ? = = = = = = = = = = = = = = = = = = A = G D T = = G G = C = C 2 G = = = = = ? ? = = = = C = = = C ? G = ? = ? = T C = = T C = = C = A = C G = = (A) (T) = (A) (A) = = = = (G) = = = = (G) (C) = = = = 0 E007 (A) (A) = (C) = (C) (A) (C) = = = = C C C T C ? = D = T = = = G C G = = = = = A = G D T = = G G = C = C 2 G = = = = = G A = = = = C = = = C = G = = = G = T C = = = = = = = = = = = = C ? A T ? A A A ? ? ? G = = = = = = ? ? I = (T) (C) = (T) = (T) (G) (T) = = = = T T T A G ? = I = C = = = C T A = = = = = G = C I C = = A C = T = T 3 C = = = = = A G = = = = A = = = T = A = = = A = C T = = = = = = = = = = = = T ? G C ? G G G ? ? ? C = = = = = = ? ? D = 0 E008 = = = = = = = = = = = = = ? = = = = = = = = = = = G C G = = = = = A = G D T = = G G = C = C 2 G G = ? ? = G A = = = = C = = = C ? G = C = G = T C = = T C = = ? ? A = C G C = A T = A ? A C = = G = = = = = (A) (C) = = = = = = = = = = = = = = = = ? = = = = = = = = = = = C T A = = = = = G = C I C = = A C = T = T 3 C C = ? ? = A G = = = = A = = = T ? A = T = A = C T = = C T = = ? ? G = T A T = G C = G ? G A = = C = = = = = (C) (G) = = = 0 E009 A A = C = C A C = = (C) = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = (T) = = = = = = = = = = = = ? = = = ? = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = T C = T = T G T = = (T) = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = (C) = = = = = = = = = = = = ? = = = ? = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = 0 E010 = = = = = C A C = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = G = = ? = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = D = = = = = = T G T = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = C = = ? = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = I = 0 E011 = (C) (A) = (T) = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = (G) = C = = = = = = = T C = = C = A = C G = C G C = G G = = ? ? C = = = = A = G = = = = (A) (G) = (C) = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = (A) = T = = = = = = = C T = = A = G = T A = T A T = A A = = ? ? G = = = = G = C = = = 0 E012 = (C) (A) = (T) = = = = = T = T T T A G C = I = C = = = = = = = = = = = = = = = = = = = = = = = ? ? ? (C) = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = (A) (G) = (C) = = = = = C = C C C T C T = D = T = = = = = = = = = = = = = = = = = = = = = = = ? ? ? (G) = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = 0 E013 (A) = (A) (C) (T) (C) (A) (C) = = = = T T T A G C = I = C = = G C T A = = = = = G = C ? C = = A C = T = T 3 C = = ? ? = ? ? = = = = ? = = = T = A = T = A = C T = = C T = = A = G = T ? ? ? G C = = G ? A = ? C = = ? = = A = = D = (T) = (G) (T) (C) (T) (G) (T) = = = = C C C T C T = D = T = = A G C G = = = = = A = G ? T = = G G = C = C 2 G = = ? ? = ? ? = = = = ? = = = C = G = C = G = T C = = T C = = C = A = C ? ? ? A T = = A ? C = ? G = = ? = = C = = I = 0 E014 A = A C T C A C = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (C) = = ? ? ? = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = T = G T C T G T = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = (G) = = ? ? ? = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = 0 E015 = C A = T = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = T = = = = = = = = = = = = = = C = = = = = = = T C = = ? = A = C G = C G C ? G G = = = = C = = = = A = ? ? I = = A G = C = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = C = = = = = = = = = = = = = = T = = = = = = = C T = = ? = G = T A = T A T ? A A = = = = G = = = = G = ? ? D = 0 E016 = = = = = = = = = = = C = = = = = = = = = = = = G C T A = = = = = G = C I ? = = A C = T = T 3 C ? = = = = A G = = = = A = = = T = A = T = A = C T = = C T = = A = G = T A T = G C = G G G A = = C = = = = = C = = = = = = = = = = = = = = = T = = = = = = = = = = = = A G C G = = = = = A = G D ? = = G G = C = C 2 G ? = = = = G A = = = = C = = = C = G = C = G = T C = = T C = = C = A = C G C = A T = A A A C = = G = = = = = A = = = = 0 E017 A = A C T C A C = = = = T T T A G C = I = C = = G C T A = ? ? ? = G = C I C = = A C = T = ? ? ? = = ? ? = A G = ? = = A = = = T ? A = = = ? = C T = = = = = = = = = = = = T C G C = G G G A ? ? C = = = = = (A) = = (D) = T = G T C T G T = = = = C C C T C T = D = T = = A G C G = ? ? ? = A = G D T = = G G = C = ? ? ? = = ? ? = G A = ? = = C = = = C ? G = = = ? = T C = = = = = = = = = = = = C T A T = A A A C ? ? G = = = = = (C) = = (I) = 0 E018 = = = = = (C) = = = = (T) (T) (T) (T) (T) (A) (G) (C) = (I) = (C) = = = = = = = = (A) = = (A) = (G) (D) (T) = = = = = (C) = (C) = = = = = G = G A G C = T = = = = C = G = C C = = T C G = (C) (T) = = (A) = (G) = = (A) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = (C) (C) (C) (C) (C) (T) (C) (T) = (D) = (T) = = = = = = = = (G) = = (G) = (C) (I) (C) = = = = = (T) = (T) = = = = = A = A G A T = C = = = = T = A = T A = = C T A = (T) (C) = = (C) = (A) = = (G) = (C) = = = = = = = = = = = = = = = = = = = = 0 E019 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = = = = C = = = = = = = = = = = = = = T = = = = = = = C T = = A = G = T A = = = = = = = = = = = ? ? = = = = A C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = = = = T = = = = = = = = = = = = = = C = = = = = = = T C = = C = A = C G = = = = = = = = = = = ? ? = = = = C G = = = 0 E020 = (C) (A) = ? = = = = = = = (T) (T) (T) (A) (G) (C) = (I) = (C) = = (G) (C) (T) (A) = = A = = = = = = = = = A C = = = = = = = = = G = = = G C = T A = = = = = = = = C A = = = G = C T = = A = G = T A T = G C = G G G A = = C = = = = = = = = D = = (A) (G) = ? = = = = = = = (C) (C) (C) (T) (C) (T) = (D) = (T) = = (A) (G) (C) (G) = = G = = = = = = = = = G G = = = = = = = = = A = = = A T = C C = = = = = = = = A G = = = A = T C = = C = A = C G C = A T = A A A C = = G = = = = = = = = I = 0 E021 = = = ? = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = ? ? = = ? ? = = = = = = = = ? = = = = = = = = = = ? = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = ? ? = = ? ? = = = = = = = = ? = = = = = = = 0 E022 = (A) (G) = (C) = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = G = C I C = = A C = T = T 3 C = = = = = A G = = = = A = = = T = A = ? = ? = C T = = = (T) = = = = = = T = = = (G) (C) = (G) (G) = = = = (C) = = = = (A) (A) = = = = = (C) (A) = (T) = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = A = G D T = = G G = C = C 2 G = = = = = G A = = = = C = = = C = G = ? = ? = T C = = = (C) = = = = = = C = = = (A) (T) = (A) (A) = = = = (G) = = = = (G) (C) = = = = 0 E023 (A) (A) = (C) = (C) (A) (C) = = = = = = = = = = = = = = = = = = = = = = = = = A = G D T = C G G = C = C 2 G = = ? ? = G A = = = = C = = = C = G = = = G = T C = = = = = = = = = = = = C T = = = = = = = = = = = = = = = A = = = = (T) (C) = (T) = (T) (G) (T) = = = = = = = = = = = = = = = = = = = = = = = = = G = C I C = T A C = T = T 3 C = = ? ? = A G = = = = A = = = T = A = = = A = C T = = = = = = = = = = = = T C = = = = = = = = = = = = = = = C = = = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS 1.00 = 1.00 = 1.00 = 1.00 = 1.00 ? = = = 1.00 1.00 1.00 = 1.00 1.00 ? 1.00 ? = 1.00 = = = 1.00 = ? ? ? = = = = = = = = 1.00 = = 1.00 = 1.00 = = = = = = = ? 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = ? ? ? ? ? ? = 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 ? ? = = = 1.00 1.00 1.00 1.00 = = = = ? ? 1.00 1.00 0.51 = 0.51 = 0.51 = 0.51 = = = = = = ? = 1.00 = = = = = = 1.00 = = 1.00 1.00 = = = = = 1.00 1.00 = ? = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 = = ? ? ? ? ? = = 1.00 = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = 1.00 = ? ? = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 ? = 1.00 = = = = = 0.97 = 0.97 0.97 0.97 0.97 0.97 0.97 = = = = = 1.00 = 1.00 = = = = = 1.00 = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = = 1.00 = = = 1.00 1.00 1.00 1.00 = = ? = = = = 0.51 = 0.51 0.51 0.51 0.51 0.51 0.51 = = = = = = = = = = = = = = 0.52 = = = = = = = = = = 1.00 = ? 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = = = = = = 1.00 = = = = 1.00 = = = 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.72 = = = = = 0.96 = = = 1.00 = 1.00 ? 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 ? 1.00 = 1.00 = 1.00 1.00 = ? 1.00 1.00 1.00 = = = = = = = 1.00 = = = ? = 1.00 1.00 = = = = 1.00 = = 1.00 = = = = = = = ? 1.00 = 0.78 = = 0.78 = 0.78 0.78 0.78 = = = = = ? ? 1.00 = = = = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 = = 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = 1.00 = 0.93 = 0.93 0.93 0.93 0.93 0.93 0.93 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = = 0.91 0.91 = = = 0.61 = = = = = ? = 0.61 = = = = 0.67 0.67 0.67 = 1.00 = = 1.00 = 0.94 = = = = 1.00 0.90 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 = 1.00 = = 1.00 = = ? 1.00 1.00 = 1.00 1.00 = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = ? = = ? = 1.00 = 0.83 = 0.83 0.83 0.83 = 0.83 0.83 = = = = = ? ? = = 1.00 = ? 1.00 = = 1.00 = = = 1.00 ? ? ? ? = = = = = = = = = = = = ? = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = ? ? ? = = = = = = = = = = = 1.00 = = = ? ? 1.00 1.00 = 1.00 1.00 ? 1.00 ? ? 1.00 = = = = = = 1.00 ? 1.00 = 0.62 = 0.62 0.62 0.62 0.62 0.62 0.62 = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = ? = = = 1.00 = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = 0.68 = = = = 0.54 = 0.54 = 0.54 = ? = 0.54 ? = = = 0.59 = 0.59 = = = = = = 0.50 0.57 = = = = = = 1.00 = 1.00 = = = = = = = = = 1.00 = 1.00 1.00 = = = 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = 1.00 1.00 = = = 0.94 = 0.94 0.94 0.94 0.94 0.94 0.94 = = = = = 1.00 = 1.00 = = = = = 1.00 = ? ? = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = 1.00 1.00 = = = 0.56 = 0.56 = 0.56 ? ? = 0.56 0.56 = = 0.54 ? 0.54 0.54 0.54 0.54 = 0.54 = 0.54 = 0.54 = = = 0.76 = 1.00 = 1.00 = 1.00 = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = 1.00 = ? 1.00 1.00 1.00 = 1.00 = = = = 1.00 = 1.00 = = 1.00 = = = 1.00 = = = = = = = = = = 1.00 = ? ? = 1.00 = ? ? = = = = = = 1.00 = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = 1.00 1.00 = = = = 1.00 = 1.00 1.00 = 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = = = = = = = = = = = = = = = = = = = 1.00 = = = = = ? ? = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = = = = 1.00 1.00 = = 1.00 = = 1.00 1.00 = = = 1.00 = = = = = = ? = = = = = = = = = = = = = = = = 0.57 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = ? ? ? = = = = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = = 1.00 = 1.00 = = = = ? = = = ? ? ? ? 0.89 = 0.89 0.89 0.89 0.89 0.89 0.89 = = = = = 1.00 = 1.00 = = = = = 1.00 ? ? = = = = 1.00 ? ? ? = 1.00 = 1.00 1.00 ? = = = 1.00 = 1.00 = ? ? ? = = = 1.00 = = = = = 1.00 = = = = ? ? = = = ? ? ? ? ? = = 1.00 = = 1.00 = = ? = = = = = = = 1.00 ? 1.00 1.00 = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = = 0.89 0.89 = 0.89 = = = = = 0.90 = = ? ? = = = = = = = = 0.91 = = = 1.00 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = ? ? ? 1.00 = = = = = 1.00 1.00 = = = = = = = ? = = = = 1.00 1.00 1.00 = = = = 1.00 = = 1.00 1.00 = = = = = 1.00 1.00 1.00 = = 0.54 = 0.54 0.54 0.54 = 0.54 0.54 = = ? ? 0.50 0.50 0.50 0.50 = 0.50 = 0.50 = 0.50 ? ? = = = 0.50 = = 0.98 = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 ? ? = 1.00 1.00 = = 1.00 1.00 = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 = 1.00 1.00 = = = = 0.51 0.51 = 0.51 = = = = = = = = = = = = = = = = = = = = = = 0.51 = = 1.00 = = = = = = = = = 1.00 = = = = = = = = = = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = = = 1.00 ? 1.00 = = = ? 1.00 = 1.00 = 1.00 = = 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = ? ? = = = = = 1.00 = = 1.00 0.92 = 0.92 = 0.92 = 0.92 = 0.92 0.92 = = ? 0.92 0.92 0.92 = 0.92 0.92 = 0.92 = ? 0.92 = 1.00 1.00 1.00 ? = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = = 1.00 1.00 = = = = = 1.00 = = 1.00 ? 1.00 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = ? 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = 1.00 = = = = 1.00 = 1.00 = 1.00 = 0.73 = 0.73 = 0.73 = 0.73 = 0.73 0.73 = = 0.73 0.73 0.73 0.73 0.73 0.73 = 0.73 = 0.73 = 0.73 = = = = 0.76 = = = = = = = = = = = 0.72 0.72 = 0.72 = = = = = = = 0.87 = 0.84 = 0.86 0.86 = 0.86 = = = 0.86 0.86 = 0.86 = = 0.86 = = = = = = = = = = = 0.66 = = = = = = = = 0.84 = = = = = = = 0.84 0.84 = = = 0.84 = = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = = = = 1.00 = 1.00 = = = = = = = = = = = = = ? = = = 0.83 = = 0.83 0.83 0.83 0.83 = 0.83 0.83 = = = = 0.83 = = = = = 0.83 0.83 = = = = = = 1.00 = 1.00 ? 1.00 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = = = = 1.00 = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = = = 1.00 = = = = = = 1.00 = = ? = = 1.00 1.00 = = 1.00 1.00 1.00 ? 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = = = = = ? = = = ? ? 1.00 1.00 = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = ? ? = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = ? ? = = = = = = = = = 1.00 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 ? = 1.00 = 1.00 1.00 1.00 = = = = ? ? ? = = = = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 ? ? = 1.00 = = = = = 1.00 = = = = 0.89 = 0.89 0.89 0.89 0.89 0.89 0.89 = = = = 1.00 = 1.00 = 1.00 1.00 = 1.00 = 1.00 = = = 1.00 1.00 = = = 1.00 = = = = = = = = = 1.00 1.00 = = = ? ? ? = = = 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 0.99 = = = = = = 0.99 0.99 = = = = = = = 0.99 = = = 0.99 = 0.54 = 0.54 0.54 0.54 0.54 0.54 0.54 = = 1.00 = = = = = = = = = = = = ? ? = = = = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 ? 1.00 = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 1.00 = = = 0.81 = 0.81 0.81 0.81 0.81 0.81 0.81 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = ? 1.00 = = = = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 ? ? = = = = = = 1.00 = = = = = = = 1.00 = = ? 1.00 = ? 0.52 = 0.52 = 0.52 0.52 0.52 = = = = = ? ? = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = ? ? = = = = 1.00 = = = 1.00 ? 1.00 = ? = ? = 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = 0.50 0.50 = 0.50 0.50 = = = = 0.50 = = = = 0.50 0.50 = = = = 0.74 0.74 = 0.74 = 0.74 0.74 0.74 = = = = 0.99 0.99 0.99 0.99 0.99 ? = 0.99 = 0.99 = = = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = 1.00 ? 1.00 1.00 ? 1.00 1.00 1.00 ? ? ? 1.00 = = = = = = ? ? 1.00 = = = = = = = = = = = = = = ? = = = = = = = = = = = 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 0.92 = ? ? = 1.00 1.00 = = = = 1.00 = = = 1.00 ? 1.00 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = = ? ? 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 ? 1.00 1.00 = = 1.00 = = = = = 0.59 0.59 = = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = 0.70 = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = 0.81 = = = = = = = = = = = = ? = = = ? = = = = = = = = = = ? ? ? ? ? ? = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = ? = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = = = = = = 1.00 = = 0.59 0.59 = 0.59 = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = 0.98 = = = = = = = = = = = = = = = = 0.54 = 1.00 = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = = ? ? 1.00 = = = = 1.00 = 1.00 = = = = 0.88 0.88 = 0.88 = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? ? ? 0.62 = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = 0.62 = = = = = = = = = = = = = = = = = = = = 0.90 = 0.90 0.90 0.90 0.90 0.90 0.90 = = = = 0.97 0.97 0.97 0.97 0.97 0.97 = 0.97 = 0.97 = = 0.97 0.97 0.97 0.97 = = = = = 1.00 = 1.00 ? 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = ? ? = ? ? = = = = ? = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 ? ? ? 1.00 1.00 = = 1.00 ? 1.00 = ? 1.00 = = ? = = 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = 0.59 = = ? ? ? = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = = = = 0.54 = = = = = = = = = = = = = = = = = = = = = 0.98 0.98 = 0.98 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 = = ? = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 ? 1.00 1.00 = = = = 1.00 = = = = 1.00 = ? ? 1.00 = = = = = = = = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = = = = = 1.00 = 1.00 1.00 ? = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 ? = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = = 1.00 = = = = 0.94 = 0.94 0.94 0.94 0.94 0.94 0.94 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 = ? ? ? = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = ? ? ? = = ? ? = 1.00 1.00 = ? = = 1.00 = = = 1.00 ? 1.00 = = = ? = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 ? ? 1.00 = = = = = 0.58 = = 0.58 = = = = = = 0.61 = = = = 0.62 0.62 0.62 0.62 0.62 0.62 0.62 0.62 = 0.62 = 0.62 = = = = = = = = 0.75 = = 0.75 = 0.75 0.75 0.75 = = = = = 0.75 = 0.75 = = = = = 0.96 = 0.96 0.96 0.96 0.96 = 0.96 = = = = 0.96 = 0.96 = 0.96 0.96 = = 0.96 0.96 0.96 = 0.89 0.89 = = 0.89 = 0.89 = = 0.89 = 0.70 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = ? ? = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = = = = = = = = = = = ? ? = = = = 1.00 1.00 = = = = 0.78 0.78 = ? = = = = = = = 0.85 0.85 0.85 0.85 0.85 0.85 = 0.85 = 0.85 = = 0.85 0.86 0.86 0.86 = = 1.00 = = = = = = = = = 1.00 1.00 = = = = = = = = = 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = = = = = = 1.00 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 0.99 = 0.99 0.99 = 0.99 0.99 0.99 0.99 = = 0.99 = = = = = = = = 0.99 = = = = ? = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = ? ? = = ? ? = = = = = = = = ? = = = = = = = = 0.52 0.52 = 0.52 = = = = = 0.84 = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 = ? = ? = 1.00 1.00 = = = 0.58 = = = = = = 1.00 = = = 0.53 0.53 = 0.53 0.53 = = = = 0.53 = = = = 0.53 0.53 = = = = 0.55 0.55 = 0.55 = 0.55 0.55 0.55 = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = 0.98 1.00 1.00 = 1.00 = 1.00 1.00 1.00 = = ? ? = 1.00 1.00 = = = = 1.00 = = = 1.00 = 1.00 = = = 1.00 = 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = = = 0.92 = = = = END PHASEPROBS