IL20 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TAAATAATGG GAAGCCTTTC AACTTGAAAC AGGCTCCTAG GAGACCAGAA
50
GCAGCAGCCT TTCCTGAGCT CAGGTAAGAG ATCTTACCCT CTACTGACAC
100
TGCTCACGTT GTTGTGAGGA TCACCTACTT CTCCTAATCA TTTACCCAGG
150
TATGTTCAAG GTCACATCTA AA
G
GACCCTT TTCCACGAGG ACAAAATCTC
200 |
var(173):[A:0.01]
TTTGAGGACA AATAATCA
T
C
A
T
G
T
T
T
A
T
C
T
T
T
G
T
A
C
T
T
C
A
G
T
A
C
C
T
A
G
C
A
250 |
REPEAT
C
A
A
C
A
T
T
C
A
A
G
A
C
A
G
C
G
G
G
T
G
C
T
C
A
T
T
A
A
A
T
G
C
T
C
A
T
C
A
A
A
T
TGTTAGTT
300 |
var(266):[T:0.01]
|
var(267):[A:0.05]
CAGGACAACT AACATCAATC TCTACTTAAA ATGA
A
T
T
G
A
T
C
A
C
T
T
G
C
T
C
T
350 |
REPEAT
G
T
G
C
T
A
A
G
T
G
T
A
T
A
A
A
T
C
A
T
A
G
A
T
T
A
T
T
G
T
A
T
T
T
A
A
A
T
A
A
T
C
G
A
T
T
T
A
A
A
400
A
T
C
A
A
A
A
C
A
A
T
T
T
C
T
G
G
G
T
T
A
A
G
T
T
T
A
A
T
T
A
T
C
A
C
C
A
T
T
T
T
G
G
G
G
T
T
A
A
G
450
A
A
A
A
T
T
A
A
A
C
T
C
A
G
A
G
G
T
G
A
G
T
T
G
A
C
T
T
G
T
C
C
A
A
G
G
T
C
A
C
A
T
A
G
AGGTAG
500
GGTGGCCAAC TCATTCCAGT TTACCTGTGG TTTTTCCAGT TTTAAAACTG
550
AAATTTTCGT ATTTCAGGAA CCATTCCCTG CCCCCCAACC TCAGT
C
CTGG
600 |
var(596):[G:0.15]
GTAAACTGGA ATGACCCACA TCAATGGAAA CTAGTAAAGC GAGGATTTAT
650
TTGGACCCAG TTCTCTTGTC TCCAAACCCA GAGTCCTCTT TGATTCTTTT
700
GGGTTTGGTT TGCTTTTTTC CTTTTCCTAC ATTTGACAGT ATCTCGAGTG
750
GTCACAAATG TAAAA
A
A
T
G
T
C
T
A
G
C
A
T
A
T
T
G
C
C
T
G
G
C
A
T
A
T
A
G
G
A
A
A
A
A
T
800 |
REPEAT
T
C
A
G
T
A
A
G
T
G
ATAATGATTA T
C
AGTGCTGT GCCAAGCTAT GGAGCCAGCC
850 |
var(822):[T:0.04]
ATATATATAT GGATGTGTGC ATATATATAT ATGATGTGTG TGTATATATA
900
TATGTCTTTA TAAATTTTAT GTATTTATTT CTTTCAAAAA TATTAAAGTA
950
TTTGAGAAAA TTGAAAAATT AAAAAGTAGG TTTATTACGA CTCATGACTT
1000
TAAGTTTAAA TATTTTATTT CTGCCCCAAA CAAAAT
T
TAT TATAATTTTA
1050 |
var(1037):[G:0.01]
CTGTCCTGGT TTTAAGGGAA GGAAACTCAT CAATAATATT TTCATCATAT
1100
GCTTTTGAGA AACAAAGTTA ACCATTAAGA ATGAAAC
A
T
G
A
A
A
A
C
A
T
G
T
G
1150 |
REPEAT
A
A
T
A
G
T
G
G
T
A
C
A
A
A
T
T
T
T
T
C
C
T
T
T
T
G
C
T
T
C
A
A
T
A
T
G
G
C
T
C
A
G
C
A
T
G
G
C
A
C
1200
T
G
T
C
G
A
A
T
T
T
T
G
T
C
T
T
T
A
T
A
T
A
A
A
A
T
T
T
T
G
A
T
A
T
T
T
T
G
T
T
T
G
T
C
A
T
A
A
G
C
1250
T
T
T
T
T
A
A
T
T
C
A
T
T
T
T
T
A
T
A
T
T
G
C
A
C
T
A
A
A
A
T
A
T
T
T
T
T
A
T
C
T
T
G
A
T
G
A
C
T
G
1300 |
var(1266):[G:0.45]
A
G
G
T
T
T
T
T
T
A
G
T
G
C
T
C
C
C
T
T
A
A
A
T
T
T
T
G
C
A
C
C
T
A
A
A
A
T
G
A
G
T
G
C
C
T
C
A
A
T
1350
T
G
T
T
T
T
A
C
C
C
T
A
A
C
C
T
C
A
G
C
C
C
ATTATTAT TTTATCTTAA AACTCAGCAA
1400
ACACCCTAAC CTGCTCTCTT ACTGAGGAGG CTCGCCCAAG AATAAATGAG
1450
TTCCGTCATT GCCTTTCTTC TCTGACTTTT GGGACCATTT GCTTGGTCTA
1500
GGACCTGAGT TGCAGGTCCA GGAAAGCGTG TACTCTCGAA TCCACCCAGG
1550
AGTGCCTGAC TACAGTCCTC CTGCAGAGGG CGCTGTGGAG TCCCAGACAC
1600
GAGTGTTAGG TGGAATCGGG CTGATTGCCC ATCA
C
GTCTT GCCTTTCCCT
1650 |
var(1635):[A:0.01]
GGCAGTAGGC TTGTTATGAA ATCATTGACT TTCTATTTGC CTCTGGGGCT
1700
TAAGCGAATC TGTTACCCTC AAATAACCTA TCTGATCTCA GACAAATGCC
1750
AAACAGAGCT CAGTTTCTCT GCCCTGTGGG TGGCCATAAA ATCCAGACAA
1800
TTTCCC
C
CTA GGTGTTTTCG ATGGCGCAGC CACAGCTTCT GTGAGATTCG
1850 |
var(1807):[T:0.16]
ATTTCTCCCC AGTTCCCCTG TGGGTCTGAG GGGACCAGAA GGGTGAGCTA
1900
CGTTGGCTTT CTGGAAGGGG AGGCTATATG CGTCAATTCC CCAAAACAAG
1950
TTTTGACATT TCCCCTGAAA TGTCATTCTC TATCTATTCA CTGCAAGTGC
2000
CTGCTGTTCC AGGCCTTACC TGCTGGGCAC TAACGGCGGA GCCAGGATGG
2050
GGACAGAATA AAGGAGCCAC GACCTGTGCC ACCAACTCGC ACTCAGACTC
2100
TGAACTCAGA CCTGAAATCT TCTCTTCACG GGAGGCTTGG CAGTTTTTCT
2150
TAGTAAGTTG CGTGGATGGG CCACACTGTC TGAGGCCAGA TAAGGCTGTT
2200
CTCTTCCCCT GACCCCCCAC CCCTCACCCC GTGGACACTT GGAGGAGGGG
2250
AAACTCAGTA A
G
TCATGCTC TCTTCTTTGA ATTCCTAGCT CCTGTGGTCT
2300 |
var(2262):[A:0.01]
CCAGATTTCA GGCCTAAG
A
T
G
A
A
A
G
C
C
T
C
T
A
G
T
C
T
T
G
C
C
T
T
C
A
G
C
C
T
T
C
T
2350 | Exon 1
M K A S S L A F S L L 11
C
T
C
T
G
C
T
G
C
G
T
T
T
T
A
T
C
T
C
C
T
A
T
G
G
A
C
T
C
C
T
T
C
C
A
C
T
G
G
A
C
T
G
A
A
G
A
C
A
C
2400
S A A F Y L L W T P S T G L K T 27
T
C
A
A
T
T
T
G
G
G
A
A
G
C
T
G
T
G
T
G
A
T
C
G
C
C
A
C
A
A
A
C
C
T
T
C
A
G
G
A
A
A
T
A
C
G
A
A
A
T
2450
L N L G S C V I A T N L Q E I R N 44
G
G
A
T
T
T
T
C
T
G
A
G
A
T
A
C
G
G
G
G
C
A
G
T
G
T
G
GTA C
G
TAAGCGGG TATCTACCTC
2500 |
var(2482):[A:0.01]
G F S E I R G S V 53
TCCTGAAAGC CTTTTCTCTT CCTTCCTTGT CCGTTTCTCT TTCCTGGCAG
2550
TACTGGCAGT GTAATCATAA AAAGAGGCAG GCTGGGGATT CCTTACCCGG
2600
GGGATGTATT CCAAAGAAAT AACTGTAGTT CAAATATTTA AAATGTTTTG
2650
GGAAAGGACA CCTCCCACTA GTTCTTGGCA GGGAGTGGAT GAGAAGTCTT
2700
GATATTGAAG ACCCTGGCAG CAGGCACTGA CTCATCCTTG CTTGTTTTGT
2750
CTTCTTCTGT TTAG
C
A
A
G
C
C
A
A
A
G
A
T
G
G
A
A
A
C
A
T
T
G
A
C
A
T
C
A
G
A
A
T
C
T
T
A
2800 | Exon 2
Q A K D G N I D I R I L 65
A
G
G
A
G
G
A
C
T
G
A
G
T
C
T
T
T
G
C
A
A
G
A
C
A
C
A
A
A
G
GTATGTGCTT GGCCCAGACA
2850
R R T E S L Q D T K 75
AACTCTGGGA GGAGGAGTGG AGTGGGAGCA TCTCCATCAC CCTGGTCTTG
2900
TCTCTGCTCT CCCCTTTCCC CTCACCAATA TACCTGTGGT TTTTTGCAG
C
2950 | Exon 3
75
C
T
G
C
G
A
A
T
C
G
A
T
G
C
T
G
C
C
T
C
C
T
G
C
G
C
C
A
T
T
T
G
C
T
A
A
G
A
C
T
C
T
A
T
C
T
G
G
A
C
3000
P A N R C C L L R H L L R L Y L D 92
A
G
G
G
T
A
T
T
T
A
A
A
A
A
C
T
A
C
C
A
G
A
C
C
C
C
T
G
A
C
C
A
T
T
A
T
A
C
T
C
T
C
C
G
G
A
A
G
A
T
3050
R V F K N Y Q T P D H Y T L R K I 109
C
A
G
C
A
G
C
C
T
C
G
C
C
A
A
T
T
C
C
T
T
T
C
T
T
A
C
C
A
T
C
A
A
G
A
A
G
G
A
C
C
T
C
C
G
G
C
T
C
T
3100
S S L A N S F L T I K K D L R L 125
G
T
GTGAGTGT GGGTCTTGGG TGACAGGATG CATCTCAGCA CACAGCTTCA
3150
C 126
ATGGCTTAGC AACTAAACTC TCTTTCCTAC CTCCATTTAA TGGATGGAGA
3200
AACTGAGTCC AAAAGTTCTA ATAATCTGTG TTGAGACATG TGACTAGGTA
3250
ATAAGAACTC AGTTTTATTG ACTTTTCGGT ATATGCTCTA GGCAAAAAGT
3300
ACTTTGCAAA GTCTAAAGAA CTATAAGATG CTAACTATTT GA
T
ATTAATG
3350 |
var(3343):[C:0.01]
ATAACTCTGT TGTCTTTGAA ATT
A
TACTTT TTCTGTAGGT GAGGTATCCT
3400 |
var(3374):[G:0.10]
ACAGTATATT AGTGCGTCCT CTGTCTAGGC AGTCAATTAG TAGACCATTG
3450
AGCTTGACCT CAGAATATAG TCTGAATAGG ACCTAGGAAT TCAATTCTTT
3500
TTTTTTTTTT TCTCAATGGG GGCTCAAAGA GCTCTGGGAT AGAGCTCCTA
3550
GACTACAGCT GGGGGTTGTG GGGAGGCCAG ATGGGGTACG GGGATGGCAA
3600
ATGCCTTCAG TACTGCCTGC CTATTTCTAA AAAAGAAGTG ATGAGTTCCA
3650
TGTTTGAGCC TAAAAGGTGG CTTCCTCTCC TAGCTGATGA TGAACTTA
A
T
3700 |
var(3699):[G:0.31]
GATTCCAAAT GTGAGGTCTG AAAGAGCTTT TCTAT
A
GGAA TAAGCATCCT
3750 |
var(3736):[G:0.06]
CAGGGTTGTG GGTGAAAGAG TAGAGTTTCT
A
CCTGCTTCA TGTCAATGGC
3800 |
var(3781):[G:0.29]
AAAAAATCAG AATCTGTAAT ATAATCTATT ATTCTTTGGG TCCTTTTCAG
3850
126
C
A
T
G
C
C
C
A
C
A
T
G
A
C
A
T
G
C
C
A
T
T
G
T
G
G
G
G
A
G
G
A
A
G
C
A
A
T
G
A
A
G
A
A
A
T
A
C
A
G
3900 | Exon 4
H A H M T C H C G E E A M K K Y S 143
C
C
A
G
A
T
T
C
T
G
A
G
T
C
A
C
T
T
T
G
A
A
A
A
G
GTATA TGCGACTTTG GCATTGATTG
3950
Q I L S H F E K 151
GGATG
G
GTGT GTTTTAAGAA CTGAGATCAT AGGTAGGTGG GATGGTTATT
4000 |
var(3956):[A:0.01]
CACTGTTAGA CATCCTGTAG CCTTCAGGTT CATAGCCCTC TGAAATCATG
4050
AGGACCAGC
C
CTTGCTTTAA CCCAGGG
G
AC ACCCATCCAG GCTCTAGAGG
4100 |
var(4060):[A:0.02]
|
var(4078):[A:0.01]
AGTACCCTCT CTGGGTGATG CTCTGGAAAT GGAAAGGGAA TGGCCATGAT
4150
TCCATCAAGT CACTACAGTG ACATCTGGAT CTTTTAGCTG CACAAACCAG
4200
AGGCAATAGT TTTACAATGT TCACACACTT CTATGTACCT TTGAAAACAC
4250
TCACAATTTC ACACACACAC C
C
A
T
G
C
C
A
T
T
C
A
A
T
T
T
C
T
C
A
C
C
T
T
C
A
C
A
C
C
4300 |
REPEAT
T
T
C
T
C
A
T
G
T
C
T
G
C
C
A
G
G
A
A
G
G
C
C
T
G
G
A
T
T
T
C
A
C
T
C
C
T
C
A
C
T
G
A
C
T
A
A
A
T
C
4350
C
T
A
C
T
C
A
T
C
C
T
T
T
A
A
A
G
A
C
T
C
A
G
C
C
T
G
G
G
C
A
T
C
A
C
T
T
T
C
A
G
G
A
A
G
G
T
G
C
T
4400
G
G
C
T
C
C
T
T
C
T
C
T
C
A
G
A
G
T
T
A
G
A
T
G
C
C
T
C
C
C
A
C
A
T
C
A
T
C
T
T
G
T
A
G
G
A
A
T
T
T
4450
C
A
T
C
C
C
T
T
T
A
T
T
C
A
C
C
A
C
A
C
T
A
C
A
T
T
T
T
A
G
T
T
G
C
C
T
G
T
T
T
T
T
G
C
C
A
G
T
C
T
4500
C
C
T
C
A
C
T
C
A
A
C
T
G
T
G
G
A
T
A
G
G
G
A
T
T
G
T
G
C
C
A
T
T
C
A
C
C
T
T
T
T
C
A
T
C
C
C
T
A
A
4550
C
C
A
T
C
A
G
C
T
A
G
G
T
G
A
T
T
G
G
C
A
C
A
ATCAATA TCTGTTCAAC TGATGTGTGC
4600
ACCGTAGGCA ACCCCTACAC ACACACACAG GCACGTGCAC ACACACACAC
4650
ACACACGTTT CTTAAAGAAA ATAGCTTGAT TATTTTGATC TCTGTGATTC
4700
AAGAGTCTTA AGTAGCAGTT
T
T
A
C
T
T
C
T
G
C
T
A
C
C
C
C
C
T
T
G
C
A
C
C
T
C
A
G
T
T
4750 |
REPEAT
T
C
T
G
T
A
C
A
T
A
A
G
A
C
C
A
G
G
G
T
G
A
T
G
A
A
C
T
C
A
A
T
G
A
T
T
T
C
C
C
T
T
C
C
T
T
G
T
G
T
4800
G
A
T
A
T
C
T
T
G
A
G
A
T
T
C
T
A
T
A
A
C
T
TCTTTAAG TGCTTCATCT TGAAAAGAAT
4850
GCTCTGCTTA CAATTGTCAG CAGACCTATC CATAAAAGAG ATAGGTCCTG
4900
GAGCAAATGC TGTCTCATGA ATTG
C
TAACC ACATGGGTGT GTGTCTCTTT
4950 |
var(4925):[T:0.20]
CAG
C
T
G
G
A
A
C
C
T
C
A
G
G
C
A
G
C
A
G
T
T
G
T
G
A
A
G
G
C
T
T
T
G
G
G
G
G
A
A
C
T
A
G
A
C
A
T
5000 | Exon 5
L E P Q A A V V K A L G E L D I 167
T
C
T
T
C
T
G
C
A
A
T
G
G
A
T
G
G
A
G
G
A
G
A
C
A
G
A
A
T
A
G
GAGGAAAGT GATGCTGCTG
5050
L L Q W M E E T E 176
CTAAGAATAT TC
G
AGGTCAA GAGCTCCAGT CTTCAATACC TGCAGAGGAG
5100 |
var(5063):[A:0.06]
GCATGACCCC AAACCACCAT CTCTTTACTG TACTAGTCTT GTGCTGGTCA
5150
CAGT
G
TATCT TATTTATGCA TTACTTGCTT CCTTGCATGA TTGTCTTTAT
5200 |
var(5155):[A:0.01]
GCATCCCCAA TCTTAATTGA GACCATACTT GTATAAGATT TTTGTAATAT
5250
CTTTCTGCTA TTGGATATAT TTATTAGTTA ATATATTTAT TTATTTTTTG
5300
CTATTTAATG TATTTATTTT TTTACTTGGA CATGAAACTT TAAAAAAATT
5350
CACAGATTAT ATTTATAACC TGACTAGAGC AGGTGATGTA TTTTTATA
C
A
5400 |
var(5399):[T:0.04]
GTAAAAAAAA AAAACCTTGT AAATTCTAGA AGAGTGGCTA GGGGGGTTAT
5450
TCATTTGTAT TCAACTAAGG ACATATTTAC TCATGCTGAT GCTCTGTGAG
5500
ATATTTGAAA TTGAACCAAT GACTACTTAG GATGGGTTGT GGAATAAGTT
5550
TTGATGTGGA ATTGCACATC TACCTTACAA TTACTGACCA TCCCCAGTAG
5600
ACTCCCCAGT CCCATAATTG TGTATCTTCC AGCCAGGAAT CCTACACGGC
5650
CAGCATGTAT TTCTACAAAT AAAGTTTTCT TTGC
A
TAACA TCTGCTTGGA
5700 |
var(5685):[G:0.01]
GTTTGCAAAT GTTTCAAGAG CAGAGACCAT GTTGAGGATA AGTTTGAATC
5750
TCATTTCACC CCAGGTCCTC TTGCTCCTTT GAGGAAGAAG ATGTAGGAAC
5800
CTCGA
T
CTTC TCTCTCCTGC AGATTTCATC CTCAGCTCTA TCTCCTAATT
5850 |
var(5806):[C:0.10]
CATACTGCTC TGACCCCA
C
G ACTGCCCTCC TCTCAAAAGG ACTGTGACAG
5900 |
var(5869):[T:0.02]
AGTGAGGGGC TTCAGCCATC TCTGCTTTC
G
CCTCATTGGC TTGGAGCACT
5950 |
var(5930):[A:0.01]
GCCCTTTCTA TACCTCTGTT TTCTTTCTCA CCCCATACCC TTGCAAGACA
6000
AATTACAATG GGCATGAGG
C
GCTATTATAA AGGTTAAAAA CACACAGGTG
6050 |
var(6020):[T:0.01]
CAAAGTGTAG GTCTAGAGTC TTGCCCAGAC AGGTGTATGA GCCCCCTTTT
6100
GAGGCCCTTC CATTTTGGAT TCTGTCCAGC CTCAGAGTTT AGGTTGTTAC
6150
CAGATCAAGT CCTTATCTTT GTGTCCAACT ATTAAGTCAG TGTTTTCTTT
6200
CCAGGCCCCC TTCAGGTTGA GTGTCCCTGG ACACTGAGGA GCCAGAGTTC
6250
TGGCCTGGGC TGGTTCCTTC CTTCTTCCCC CACCTCACTC TGAAG
C
GCAC
6300 |
var(6296):[T:0.47]
CCCCAATTTA GTTGCTTAGT TTTCTCAGTC TCAGAAA
C
AA CAGTCTCAGG
6350 |
var(6338):[A:0.01]
CTGATTCCCT GGGTCCTAAA GATAACTCTC CTTACTGCTT TAATTTCTAC
6400
TCCCTGTTCT TAGCCTGGGC CCTGATATAG TTTCAATGAC TTTAACTTTT
6450
GATAAC
T
C
T
C
A
T
T
A
T
A
C
A
A
G
T
A
A
C
A
G
C
T
G
C
C
C
A
A
C
A
G
A
A
A
A
G
A
A
A
T
T
T
T
G
6500 |
REPEAT
G
A
A
G
A
A
A
A
C
A
G
A
A
A
T
A
T
A
A
A
G
A
A
G
A
A
A
A
T
T
A
A
A
A
T
C
A
C
C
C
A
T
A
A
T
C
T
C
A
C
6550
C
A
C
C
C
T
C
A
G
A
C
A
A
C
C
A
C
T
T
T
T
A
A
A
C
A
T
T
T
A
T
G
C
T
T
A
T
T
T
T
T
T
C
C
A
G
A
T
A
T
6600
T
T
T
T
T
GATGG GTTCAAATCA TGACTCAGCT CTCA