LOCUS AF402002 6634 bp DNA linear PRI 09-AUG-2001 DEFINITION Homo sapiens interleukin 20 (IL20) gene, complete cds. ACCESSION AF402002 VERSION AF402002.1 GI:15128210 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 6634) AUTHORS Rieder,M.J., Carrington,D.P., Chung,M.-W., Lee,K.L., Poel,C.L., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (25-JUL-2001) Molecular Biotechnology, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.mbt.washington.edu). FEATURES Location/Qualifiers source 1..6634 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" variation 173 /frequency="0.01" /replace="A" repeat_region 219..292 /rpt_family="L2" /rpt_type=dispersed variation 266 /frequency="0.01" /replace="T" variation 267 /frequency="0.05" /replace="A" repeat_region 335..494 /rpt_family="MIR" /rpt_type=dispersed variation 596 /frequency="0.15" /replace="G" repeat_region 766..810 /rpt_family="L2" /rpt_type=dispersed variation 822 /frequency="0.04" /replace="T" variation 1037 /frequency="0.01" /replace="G" repeat_region 1138..1372 /rpt_family="MER96B" /rpt_type=dispersed variation 1266 /frequency="0.45" /replace="G" variation 1635 /frequency="0.01" /replace="A" variation 1807 /frequency="0.16" /replace="T" variation 2262 /frequency="0.01" /replace="A" gene <2319..>5031 /gene="IL20" mRNA join(<2319..2477,2765..2830,2950..3102,3851..3925, 4954..>5031) /gene="IL20" /product="interleukin 20" CDS join(2319..2477,2765..2830,2950..3102,3851..3925, 4954..5031) /gene="IL20" /codon_start=1 /product="interleukin 20" /protein_id="AAK84423.1" /db_xref="GI:15128211" /translation="MKASSLAFSLLSAAFYLLWTPSTGLKTLNLGSCVIATNLQEIRN GFSEIRGSVQAKDGNIDIRILRRTESLQDTKPANRCCLLRHLLRLYLDRVFKNYQTPD HYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAAVVK ALGELDILLQWMEETE" variation 2482 /gene="IL20" /frequency="0.01" /replace="A" variation 3343 /gene="IL20" /frequency="0.01" /replace="C" variation 3374 /gene="IL20" /frequency="0.10" /replace="G" variation 3699 /gene="IL20" /frequency="0.31" /replace="G" variation 3736 /gene="IL20" /frequency="0.06" /replace="G" variation 3781 /gene="IL20" /frequency="0.29" /replace="G" variation 3956 /gene="IL20" /frequency="0.01" /replace="A" variation 4060 /gene="IL20" /frequency="0.02" /replace="A" variation 4078 /gene="IL20" /frequency="0.01" /replace="A" repeat_region 4272..4573 /rpt_family="L2" /rpt_type=dispersed repeat_region 4721..4822 /rpt_family="MIR3" /rpt_type=dispersed variation 4925 /gene="IL20" /frequency="0.20" /replace="T" variation 5063 /frequency="0.06" /replace="A" variation 5155 /frequency="0.01" /replace="A" variation 5399 /frequency="0.04" /replace="T" variation 5685 /frequency="0.01" /replace="G" variation 5806 /frequency="0.10" /replace="C" variation 5869 /frequency="0.02" /replace="T" variation 5930 /frequency="0.01" /replace="A" variation 6020 /frequency="0.01" /replace="T" variation 6296 /frequency="0.47" /replace="T" variation 6338 /frequency="0.01" /replace="A" repeat_region 6457..6605 /rpt_family="L1ME4a" /rpt_type=dispersed ORIGIN 1 taaataatgg gaagcctttc aacttgaaac aggctcctag gagaccagaa gcagcagcct 61 ttcctgagct caggtaagag atcttaccct ctactgacac tgctcacgtt gttgtgagga 121 tcacctactt ctcctaatca tttacccagg tatgttcaag gtcacatcta aaggaccctt 181 ttccacgagg acaaaatctc tttgaggaca aataatcatc atgtttatct ttgtacttca 241 gtacctagca caacattcaa gacagcgggt gctcattaaa tgctcatcaa attgttagtt 301 caggacaact aacatcaatc tctacttaaa atgaattgat cacttgctct gtgctaagtg 361 tataaatcat agattattgt atttaaataa tcgatttaaa atcaaaacaa tttctgggtt 421 aagtttaatt atcaccattt tggggttaag aaaattaaac tcagaggtga gttgacttgt 481 ccaaggtcac atagaggtag ggtggccaac tcattccagt ttacctgtgg tttttccagt 541 tttaaaactg aaattttcgt atttcaggaa ccattccctg ccccccaacc tcagtcctgg 601 gtaaactgga atgacccaca tcaatggaaa ctagtaaagc gaggatttat ttggacccag 661 ttctcttgtc tccaaaccca gagtcctctt tgattctttt gggtttggtt tgcttttttc 721 cttttcctac atttgacagt atctcgagtg gtcacaaatg taaaaaatgt ctagcatatt 781 gcctggcata taggaaaaat tcagtaagtg ataatgatta tcagtgctgt gccaagctat 841 ggagccagcc atatatatat ggatgtgtgc atatatatat atgatgtgtg tgtatatata 901 tatgtcttta taaattttat gtatttattt ctttcaaaaa tattaaagta tttgagaaaa 961 ttgaaaaatt aaaaagtagg tttattacga ctcatgactt taagtttaaa tattttattt 1021 ctgccccaaa caaaatttat tataatttta ctgtcctggt tttaagggaa ggaaactcat 1081 caataatatt ttcatcatat gcttttgaga aacaaagtta accattaaga atgaaacatg 1141 aaaacatgtg aatagtggta caaatttttc cttttgcttc aatatggctc agcatggcac 1201 tgtcgaattt tgtctttata taaaattttg atattttgtt tgtcataagc tttttaattc 1261 atttttatat tgcactaaaa tatttttatc ttgatgactg aggtttttta gtgctccctt 1321 aaattttgca cctaaaatga gtgcctcaat tgttttaccc taacctcagc ccattattat 1381 tttatcttaa aactcagcaa acaccctaac ctgctctctt actgaggagg ctcgcccaag 1441 aataaatgag ttccgtcatt gcctttcttc tctgactttt gggaccattt gcttggtcta 1501 ggacctgagt tgcaggtcca ggaaagcgtg tactctcgaa tccacccagg agtgcctgac 1561 tacagtcctc ctgcagaggg cgctgtggag tcccagacac gagtgttagg tggaatcggg 1621 ctgattgccc atcacgtctt gcctttccct ggcagtaggc ttgttatgaa atcattgact 1681 ttctatttgc ctctggggct taagcgaatc tgttaccctc aaataaccta tctgatctca 1741 gacaaatgcc aaacagagct cagtttctct gccctgtggg tggccataaa atccagacaa 1801 tttcccccta ggtgttttcg atggcgcagc cacagcttct gtgagattcg atttctcccc 1861 agttcccctg tgggtctgag gggaccagaa gggtgagcta cgttggcttt ctggaagggg 1921 aggctatatg cgtcaattcc ccaaaacaag ttttgacatt tcccctgaaa tgtcattctc 1981 tatctattca ctgcaagtgc ctgctgttcc aggccttacc tgctgggcac taacggcgga 2041 gccaggatgg ggacagaata aaggagccac gacctgtgcc accaactcgc actcagactc 2101 tgaactcaga cctgaaatct tctcttcacg ggaggcttgg cagtttttct tagtaagttg 2161 cgtggatggg ccacactgtc tgaggccaga taaggctgtt ctcttcccct gaccccccac 2221 ccctcacccc gtggacactt ggaggagggg aaactcagta agtcatgctc tcttctttga 2281 attcctagct cctgtggtct ccagatttca ggcctaagat gaaagcctct agtcttgcct 2341 tcagccttct ctctgctgcg ttttatctcc tatggactcc ttccactgga ctgaagacac 2401 tcaatttggg aagctgtgtg atcgccacaa accttcagga aatacgaaat ggattttctg 2461 agatacgggg cagtgtggta cgtaagcggg tatctacctc tcctgaaagc cttttctctt 2521 ccttccttgt ccgtttctct ttcctggcag tactggcagt gtaatcataa aaagaggcag 2581 gctggggatt ccttacccgg gggatgtatt ccaaagaaat aactgtagtt caaatattta 2641 aaatgttttg ggaaaggaca cctcccacta gttcttggca gggagtggat gagaagtctt 2701 gatattgaag accctggcag caggcactga ctcatccttg cttgttttgt cttcttctgt 2761 ttagcaagcc aaagatggaa acattgacat cagaatctta aggaggactg agtctttgca 2821 agacacaaag gtatgtgctt ggcccagaca aactctggga ggaggagtgg agtgggagca 2881 tctccatcac cctggtcttg tctctgctct cccctttccc ctcaccaata tacctgtggt 2941 tttttgcagc ctgcgaatcg atgctgcctc ctgcgccatt tgctaagact ctatctggac 3001 agggtattta aaaactacca gacccctgac cattatactc tccggaagat cagcagcctc 3061 gccaattcct ttcttaccat caagaaggac ctccggctct gtgtgagtgt gggtcttggg 3121 tgacaggatg catctcagca cacagcttca atggcttagc aactaaactc tctttcctac 3181 ctccatttaa tggatggaga aactgagtcc aaaagttcta ataatctgtg ttgagacatg 3241 tgactaggta ataagaactc agttttattg acttttcggt atatgctcta ggcaaaaagt 3301 actttgcaaa gtctaaagaa ctataagatg ctaactattt gatattaatg ataactctgt 3361 tgtctttgaa attatacttt ttctgtaggt gaggtatcct acagtatatt agtgcgtcct 3421 ctgtctaggc agtcaattag tagaccattg agcttgacct cagaatatag tctgaatagg 3481 acctaggaat tcaattcttt tttttttttt tctcaatggg ggctcaaaga gctctgggat 3541 agagctccta gactacagct gggggttgtg gggaggccag atggggtacg gggatggcaa 3601 atgccttcag tactgcctgc ctatttctaa aaaagaagtg atgagttcca tgtttgagcc 3661 taaaaggtgg cttcctctcc tagctgatga tgaacttaat gattccaaat gtgaggtctg 3721 aaagagcttt tctataggaa taagcatcct cagggttgtg ggtgaaagag tagagtttct 3781 acctgcttca tgtcaatggc aaaaaatcag aatctgtaat ataatctatt attctttggg 3841 tccttttcag catgcccaca tgacatgcca ttgtggggag gaagcaatga agaaatacag 3901 ccagattctg agtcactttg aaaaggtata tgcgactttg gcattgattg ggatgggtgt 3961 gttttaagaa ctgagatcat aggtaggtgg gatggttatt cactgttaga catcctgtag 4021 ccttcaggtt catagccctc tgaaatcatg aggaccagcc cttgctttaa cccaggggac 4081 acccatccag gctctagagg agtaccctct ctgggtgatg ctctggaaat ggaaagggaa 4141 tggccatgat tccatcaagt cactacagtg acatctggat cttttagctg cacaaaccag 4201 aggcaatagt tttacaatgt tcacacactt ctatgtacct ttgaaaacac tcacaatttc 4261 acacacacac ccatgccatt caatttctca ccttcacacc ttctcatgtc tgccaggaag 4321 gcctggattt cactcctcac tgactaaatc ctactcatcc tttaaagact cagcctgggc 4381 atcactttca ggaaggtgct ggctccttct ctcagagtta gatgcctccc acatcatctt 4441 gtaggaattt catcccttta ttcaccacac tacattttag ttgcctgttt ttgccagtct 4501 cctcactcaa ctgtggatag ggattgtgcc attcaccttt tcatccctaa ccatcagcta 4561 ggtgattggc acaatcaata tctgttcaac tgatgtgtgc accgtaggca acccctacac 4621 acacacacag gcacgtgcac acacacacac acacacgttt cttaaagaaa atagcttgat 4681 tattttgatc tctgtgattc aagagtctta agtagcagtt ttacttctgc tacccccttg 4741 cacctcagtt tctgtacata agaccagggt gatgaactca atgatttccc ttccttgtgt 4801 gatatcttga gattctataa cttctttaag tgcttcatct tgaaaagaat gctctgctta 4861 caattgtcag cagacctatc cataaaagag ataggtcctg gagcaaatgc tgtctcatga 4921 attgctaacc acatgggtgt gtgtctcttt cagctggaac ctcaggcagc agttgtgaag 4981 gctttggggg aactagacat tcttctgcaa tggatggagg agacagaata ggaggaaagt 5041 gatgctgctg ctaagaatat tcgaggtcaa gagctccagt cttcaatacc tgcagaggag 5101 gcatgacccc aaaccaccat ctctttactg tactagtctt gtgctggtca cagtgtatct 5161 tatttatgca ttacttgctt ccttgcatga ttgtctttat gcatccccaa tcttaattga 5221 gaccatactt gtataagatt tttgtaatat ctttctgcta ttggatatat ttattagtta 5281 atatatttat ttattttttg ctatttaatg tatttatttt tttacttgga catgaaactt 5341 taaaaaaatt cacagattat atttataacc tgactagagc aggtgatgta tttttataca 5401 gtaaaaaaaa aaaaccttgt aaattctaga agagtggcta ggggggttat tcatttgtat 5461 tcaactaagg acatatttac tcatgctgat gctctgtgag atatttgaaa ttgaaccaat 5521 gactacttag gatgggttgt ggaataagtt ttgatgtgga attgcacatc taccttacaa 5581 ttactgacca tccccagtag actccccagt cccataattg tgtatcttcc agccaggaat 5641 cctacacggc cagcatgtat ttctacaaat aaagttttct ttgcataaca tctgcttgga 5701 gtttgcaaat gtttcaagag cagagaccat gttgaggata agtttgaatc tcatttcacc 5761 ccaggtcctc ttgctccttt gaggaagaag atgtaggaac ctcgatcttc tctctcctgc 5821 agatttcatc ctcagctcta tctcctaatt catactgctc tgaccccacg actgccctcc 5881 tctcaaaagg actgtgacag agtgaggggc ttcagccatc tctgctttcg cctcattggc 5941 ttggagcact gccctttcta tacctctgtt ttctttctca ccccataccc ttgcaagaca 6001 aattacaatg ggcatgaggc gctattataa aggttaaaaa cacacaggtg caaagtgtag 6061 gtctagagtc ttgcccagac aggtgtatga gccccctttt gaggcccttc cattttggat 6121 tctgtccagc ctcagagttt aggttgttac cagatcaagt ccttatcttt gtgtccaact 6181 attaagtcag tgttttcttt ccaggccccc ttcaggttga gtgtccctgg acactgagga 6241 gccagagttc tggcctgggc tggttccttc cttcttcccc cacctcactc tgaagcgcac 6301 ccccaattta gttgcttagt tttctcagtc tcagaaacaa cagtctcagg ctgattccct 6361 gggtcctaaa gataactctc cttactgctt taatttctac tccctgttct tagcctgggc 6421 cctgatatag tttcaatgac tttaactttt gataactctc attatacaag taacagctgc 6481 ccaacagaaa agaaattttg gaagaaaaca gaaatataaa gaagaaaatt aaaatcaccc 6541 ataatctcac caccctcaga caaccacttt taaacattta tgcttatttt ttccagatat 6601 tttttgatgg gttcaaatca tgactcagct ctca //