Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000150 CC 19 23 42 CT 4 0 4 TT 0 0 0 0.209 0.000 0.095 000422 AA 0 0 0 AG 3 0 3 GG 20 23 43 0.112 0.000 0.052 000560 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 000606 CC 0 0 0 CG 1 0 1 GG 22 23 45 0.011 0.000 0.006 000627 CC 0 0 0 CG 1 0 1 GG 21 23 44 0.012 0.000 0.006 000673 AA 0 0 0 AC 1 1 2 CC 21 22 43 0.012 0.011 0.023 000728 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 001018 CC 0 3 3 CT 5 12 17 TT 19 8 27 0.324 0.209 0.022 001063 AA 0 0 0 AG 0 2 2 GG 24 21 45 0.000 0.048 0.022 001193 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 001244 AA 0 0 0 AC 2 0 2 CC 22 23 45 0.045 0.000 0.022 001245 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 001246 -- 0 0 0 +- 2 0 2 ++ 22 23 45 0.045 0.000 0.022 001343 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 001519 CC 0 0 0 CG 2 8 10 GG 19 15 34 0.053 1.019 0.723 001768 AA 20 15 35 AC 2 8 10 CC 0 0 0 0.050 1.019 0.703 001979 AA 0 0 0 AG 2 8 10 GG 20 15 35 0.050 1.019 0.703 002060 AA 0 0 0 AG 2 8 10 GG 22 15 37 0.045 1.019 0.666 002116 AA 22 15 37 AG 2 8 10 GG 0 0 0 0.045 1.019 0.666 002135 CC 0 0 0 CG 2 8 10 GG 22 15 37 0.045 1.019 0.666 002182 CC 0 0 0 CT 2 8 10 TT 21 15 36 0.048 1.019 0.684 002304 CC 21 14 35 CG 2 8 10 GG 0 0 0 0.048 1.086 0.703 002324 AA 21 14 35 AG 2 8 10 GG 0 0 0 0.048 1.086 0.703 002443 AA 0 0 0 AG 0 1 1 GG 23 21 44 0.000 0.012 0.006 002491 CC 0 0 0 CG 3 0 3 GG 20 23 43 0.112 0.000 0.052 002587 AA 0 0 0 AT 0 1 1 TT 19 22 41 0.000 0.011 0.006 002618 AA 17 15 32 AT 1 8 9 TT 0 0 0 0.015 1.019 0.623 002620 -- 0 0 0 +- 7 0 7 ++ 11 23 34 1.049 0.000 0.357 002630 CC 17 15 32 CG 1 8 9 GG 0 0 0 0.015 1.019 0.623 002712 AA 17 15 32 AG 1 8 9 GG 0 0 0 0.015 1.019 0.623 002732 AA 0 0 0 AC 1 8 9 CC 17 15 32 0.015 1.019 0.623 002765 GG 4 11 15 GT 9 12 21 TT 5 0 5 0.000 2.865 0.326 002977 CC 18 15 33 CT 1 8 9 TT 0 0 0 0.014 1.019 0.605 003040 CC 0 0 0 CT 1 8 9 TT 18 15 33 0.014 1.019 0.605 003050 CC 0 0 0 CT 1 8 9 TT 18 15 33 0.014 1.019 0.605 003091 AA 0 0 0 AG 1 8 9 GG 18 15 33 0.014 1.019 0.605 003254 AA 0 0 0 AG 2 8 10 GG 22 15 37 0.045 1.019 0.666 003277 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 003331 AA 3 11 14 AG 14 11 25 GG 7 0 7 0.960 2.444 0.585 003374 GG 18 22 40 GT 6 0 6 TT 0 0 0 0.490 0.000 0.224 003571 AA 21 14 35 AG 2 8 10 GG 0 0 0 0.048 1.086 0.703 003575 AA 3 11 14 AG 13 11 24 GG 7 0 7 0.631 2.444 0.390 003778 AA 21 14 35 AG 1 8 9 GG 0 0 0 0.012 1.086 0.571 003965 GG 23 15 38 GT 1 8 9 TT 0 0 0 0.011 1.019 0.527 004047 GG 3 0 3 GT 14 4 18 TT 7 19 26 0.960 0.209 0.002 004090 CC 0 0 0 CG 1 8 9 GG 23 15 38 0.011 1.019 0.527 004097 AA 0 0 0 AC 2 0 2 CC 21 23 44 0.048 0.000 0.023 004265 AA 22 15 37 AC 1 8 9 CC 0 0 0 0.011 1.019 0.541 004470 -- 23 23 46 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.005 004511 -- 21 23 44 +- 3 0 3 ++ 0 0 0 0.107 0.000 0.051 005848 AA 1 0 1 AG 11 4 15 GG 11 19 30 0.741 0.209 0.312 006284 AA 0 0 0 AG 1 9 10 GG 23 14 37 0.011 1.361 0.666 006568 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 006600 GG 1 0 1 GT 12 4 16 TT 11 18 29 1.059 0.220 0.508 006620 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 006843 CC 0 0 0 CG 8 9 17 GG 14 14 28 1.086 1.361 2.440 007044 AA 1 0 1 AG 12 4 16 GG 11 19 30 1.059 0.209 0.465 007194 AA 0 0 0 AG 4 0 4 GG 20 23 43 0.198 0.000 0.093 007498 CC 16 14 30 CT 8 9 17 TT 0 0 0 0.960 1.361 2.291 007601 GG 23 23 46 GT 1 0 1 TT 0 0 0 0.011 0.000 0.005 007650 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 007906 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 007916 AA 18 23 41 AG 6 0 6 GG 0 0 0 0.490 0.000 0.218 008513 AA 0 0 0 AG 1 1 2 GG 23 22 45 0.011 0.011 0.022 008575 CC 24 19 43 CG 0 1 1 GG 0 0 0 0.000 0.013 0.006 008576 -- 4 0 4 +- 15 13 28 ++ 5 10 15 1.526 3.569 3.190 008953 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 010234 AA 11 19 30 AG 12 4 16 GG 1 0 1 1.059 0.209 0.465 010257 CC 0 1 1 CT 5 11 16 TT 19 11 30 0.324 0.741 0.465 010746 CC 0 0 0 CT 2 9 11 TT 22 14 36 0.045 1.361 0.826 010753 CC 1 0 1 CG 12 4 16 GG 11 19 30 1.059 0.209 0.465 010952 AA 1 0 1 AG 14 13 27 GG 9 10 19 2.344 3.569 5.640 011224 CC 24 22 46 CT 0 1 1 TT 0 0 0 0.000 0.011 0.005 011341 GG 0 0 0 GT 1 0 1 TT 23 23 46 0.011 0.000 0.005 011645 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 011681 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 011873 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 012136 GG 23 23 46 GT 1 0 1 TT 0 0 0 0.011 0.000 0.005 012142 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 012233 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 012319 AA 0 0 0 AG 0 7 7 GG 24 16 40 0.000 0.741 0.304 012377 AA 0 0 0 AG 2 9 11 GG 22 14 36 0.045 1.361 0.826 012437 -- 22 14 36 +- 2 9 11 ++ 0 0 0 0.045 1.361 0.826 012508 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 012602 AA 1 0 1 AG 8 4 12 GG 15 19 34 0.003 0.209 0.002 012695 GG 20 23 43 GT 4 0 4 TT 0 0 0 0.198 0.000 0.093 012903 AA 5 10 15 AG 15 13 28 GG 4 0 4 1.526 3.569 3.190 012937 AA 0 0 0 AG 8 9 17 GG 16 14 30 0.960 1.361 2.291 013027 AA 20 23 43 AT 4 0 4 TT 0 0 0 0.198 0.000 0.093 013056 AA 0 0 0 AG 2 9 11 GG 22 14 36 0.045 1.361 0.826 013328 CC 1 0 1 CT 14 13 27 TT 9 10 19 2.344 3.569 5.640 013760 CC 0 0 0 CT 2 9 11 TT 22 14 36 0.045 1.361 0.826 013815 CC 22 14 36 CT 2 8 10 TT 0 0 0 0.045 1.086 0.684 013819 CC 0 0 0 CT 1 0 1 TT 23 22 45 0.011 0.000 0.006 013826 AA 0 0 0 AG 2 8 10 GG 22 14 36 0.045 1.086 0.684 013847 CC 0 0 0 CG 2 8 10 GG 22 14 36 0.045 1.086 0.684 013888 GG 0 3 3 GT 2 6 8 TT 22 12 34 0.045 1.890 4.704 013891 AA 22 14 36 AC 2 8 10 CC 0 0 0 0.045 1.086 0.684 013902 AA 0 0 0 AC 1 0 1 CC 23 22 45 0.011 0.000 0.006 013926 CC 0 0 0 CT 1 0 1 TT 23 22 45 0.011 0.000 0.006 013929 AA 0 0 0 AG 4 0 4 GG 20 22 42 0.198 0.000 0.095 013952 AA 0 0 0 AG 2 8 10 GG 22 14 36 0.045 1.086 0.684 014011 GG 21 14 35 GT 2 9 11 TT 0 0 0 0.048 1.361 0.848 014036 CC 10 19 29 CT 12 4 16 TT 1 0 1 1.239 0.209 0.508 014063 AA 23 23 46 AC 1 0 1 CC 0 0 0 0.011 0.000 0.005 014225 AA 22 14 36 AG 2 9 11 GG 0 0 0 0.045 1.361 0.826 014245 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 014356 AA 22 14 36 AG 2 9 11 GG 0 0 0 0.045 1.361 0.826 014687 AA 0 0 0 AC 2 8 10 CC 19 14 33 0.053 1.086 0.744 015018 AA 21 14 35 AG 2 9 11 GG 0 0 0 0.048 1.361 0.848 015023 CC 21 14 35 CG 2 8 10 GG 0 0 0 0.048 1.086 0.703 015110 AA 0 1 1 AG 2 9 11 GG 20 13 33 0.050 0.130 0.005 015132 CC 1 0 1 CT 5 8 13 TT 16 14 30 0.499 1.086 0.088 015306 GG 0 0 0 GT 1 0 1 TT 19 23 42 0.013 0.000 0.006 015346 AA 22 14 36 AT 2 9 11 TT 0 0 0 0.045 1.361 0.826 015453 AA 2 8 10 AT 7 14 21 TT 15 1 16 0.730 2.685 0.394 015555 CC 22 22 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 015559 GG 0 0 0 GT 3 9 12 TT 20 14 34 0.112 1.361 1.035 015614 AA 6 0 6 AG 13 13 26 GG 5 10 15 0.174 3.569 1.036 015653 CC 7 19 26 CT 11 4 15 TT 6 0 6 0.160 0.209 2.286 015672 CC 7 19 26 CT 11 4 15 TT 6 0 6 0.160 0.209 2.286 015687 AA 6 0 6 AG 11 4 15 GG 7 19 26 0.160 0.209 2.286 015983 CC 20 23 43 CG 3 0 3 GG 0 0 0 0.112 0.000 0.052 016022 AA 1 2 3 AC 2 7 9 CC 21 14 35 4.959 0.616 3.846 016094 GG 0 0 0 GT 0 1 1 TT 24 22 46 0.000 0.011 0.005 016184 AA 1 2 3 AG 3 7 10 GG 18 14 32 2.296 0.616 2.589 016341 AA 0 0 0 AG 3 0 3 GG 18 23 41 0.124 0.000 0.055 016364 AA 0 0 0 AG 1 0 1 GG 20 23 43 0.012 0.000 0.006 016556 CC 6 11 17 CT 9 11 20 TT 6 1 7 0.429 0.741 0.075 016608 AA 20 23 43 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 016714 AA 0 0 0 AG 3 1 4 GG 21 22 43 0.107 0.011 0.093 016857 CC 8 1 9 CT 10 11 21 TT 6 11 17 0.621 0.741 0.299 016926 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 016932 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 017001 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 017068 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 017076 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 017139 CC 7 11 18 CG 9 11 20 GG 8 1 9 1.484 0.741 0.638 017163 CC 24 20 44 CT 0 2 2 TT 0 1 1 0.000 4.707 10.729 017311 CC 0 0 0 CT 3 0 3 TT 21 23 44 0.107 0.000 0.051 017312 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 017692 -- 0 0 0 +- 2 0 2 ++ 21 23 44 0.048 0.000 0.023 017965 AA 0 2 2 AG 7 8 15 GG 14 13 27 0.840 0.221 0.002 018184 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 018240 -- 0 0 0 +- 1 0 1 ++ 23 23 46 0.011 0.000 0.005 018328 CC 1 2 3 CT 5 8 13 TT 17 13 30 0.571 0.221 0.872 018358 AA 17 23 40 AG 6 0 6 GG 0 0 0 0.517 0.000 0.224 018383 AA 22 23 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 018395 AA 19 23 42 AC 3 0 3 CC 1 0 1 2.457 0.000 6.146 018423 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 018694 CC 1 2 3 CT 6 8 14 TT 17 13 30 0.240 0.221 0.577 019077 AA 0 0 0 AG 0 4 4 GG 24 19 43 0.000 0.209 0.093 019116 CC 0 0 0 CT 2 0 2 TT 22 23 45 0.045 0.000 0.022 019327 AA 2 4 6 AG 8 13 21 GG 14 6 20 0.296 0.445 0.018 019517 AA 0 0 0 AC 1 0 1 CC 23 23 46 0.011 0.000 0.005 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 001246: c 002620: G 004470: TATG 004511: T 008576: c 012437: Ag 017692: T 018240: GCGCC