Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000140 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 000230 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 000334 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 000496 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 000561 CC 0 0 0 CT 0 1 1 TT 24 22 46 0.000 0.011 0.005 000565 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 000583 CC 20 18 38 CT 4 4 8 TT 0 1 1 0.198 1.252 0.516 000684 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 000740 CC 0 3 3 CT 7 7 14 TT 14 10 24 0.840 0.818 0.226 000750 AA 19 17 36 AG 4 2 6 GG 0 1 1 0.209 3.951 1.288 000914 AA 22 21 43 AG 2 0 2 GG 0 0 0 0.045 0.000 0.023 000934 GG 23 21 44 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 001091 AA 7 7 14 AG 13 9 22 GG 3 5 8 0.631 0.383 0.016 001222 CC 21 20 41 CG 1 0 1 GG 0 0 0 0.012 0.000 0.006 001427 CC 0 0 0 CG 1 0 1 GG 22 23 45 0.011 0.000 0.006 001626 AA 0 0 0 AG 0 2 2 GG 21 20 41 0.000 0.050 0.024 001651 CC 12 17 29 CT 7 4 11 TT 2 1 3 0.399 1.144 1.610 001654 CC 0 0 0 CT 2 0 2 TT 19 22 41 0.053 0.000 0.024 001812 CC 1 0 1 CT 4 0 4 TT 15 21 36 0.930 0.000 3.231 002527 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 002655 GG 23 21 44 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 002745 AA 2 1 3 AT 7 4 11 TT 12 18 30 0.399 1.252 1.725 003013 AA 0 0 0 AC 6 1 7 CC 17 21 38 0.517 0.012 0.320 003052 AA 1 0 1 AG 4 0 4 GG 18 22 40 1.252 0.000 3.673 003170 AA 0 0 0 AG 1 0 1 GG 22 21 43 0.011 0.000 0.006 003281 CC 24 21 45 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 003334 AA 14 18 32 AG 6 4 10 GG 4 1 5 3.744 1.252 6.257 003531 AA 0 0 0 AT 1 0 1 TT 22 23 45 0.011 0.000 0.006 003544 GG 0 0 0 GT 1 0 1 TT 22 23 45 0.011 0.000 0.006 003727 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 003728 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 003867 CC 16 22 38 CT 4 0 4 TT 1 0 1 1.037 0.000 3.452 003987 CC 13 22 35 CT 9 0 9 TT 2 0 2 0.061 0.000 1.727 004228 AA 2 1 3 AT 7 2 9 TT 12 15 27 0.399 3.445 2.579 004254 AA 1 0 1 AC 4 0 4 CC 16 20 36 1.037 0.000 3.231 004288 AA 20 21 41 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 004317 AA 21 21 42 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 004385 CC 2 1 3 CT 6 3 9 TT 14 17 31 1.099 2.136 3.210 004425 AA 17 21 38 AG 4 0 4 GG 1 0 1 1.144 0.000 3.452 004833 AA 2 1 3 AG 8 4 12 GG 13 17 30 0.221 1.144 1.250 005140 AA 21 22 43 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 005217 CC 14 18 32 CT 8 4 12 TT 2 1 3 0.296 1.252 1.447 005298 GG 18 12 30 GT 6 8 14 TT 0 3 3 0.490 0.733 0.577 005307 GG 23 23 46 GT 1 0 1 TT 0 0 0 0.011 0.000 0.005 005374 CC 2 1 3 CT 8 4 12 TT 14 18 32 0.296 1.252 1.447 005426 AA 2 1 3 AG 6 4 10 GG 16 18 34 1.407 1.252 2.863 005590 CC 2 1 3 CT 8 4 12 TT 14 17 31 0.296 1.144 1.348 005823 GG 2 1 3 GT 8 4 12 TT 14 18 32 0.296 1.252 1.447 005898 AA 2 1 3 AG 8 4 12 GG 14 18 32 0.296 1.252 1.447 006303 AA 13 17 30 AG 8 3 11 GG 2 1 3 0.221 2.136 1.725 006339 AA 2 1 3 AG 6 3 9 GG 15 17 32 1.252 2.136 3.369 006395 AA 0 5 5 AG 5 7 12 GG 18 9 27 0.342 1.995 3.273 006428 CC 15 17 32 CT 6 3 9 TT 2 1 3 1.252 2.136 3.369 006505 AA 4 3 7 AG 3 8 11 GG 17 12 29 10.022 0.733 7.542 006534 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 006734 AA 0 0 0 AG 4 0 4 GG 18 19 37 0.220 0.000 0.108 006805 GG 0 0 0 GT 4 0 4 TT 18 20 38 0.220 0.000 0.105 007138 AA 2 1 3 AG 7 4 11 GG 14 18 32 0.616 1.252 1.957 007219 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 007251 AA 15 15 30 AG 6 4 10 GG 2 1 3 1.252 0.930 2.317 007409 GG 23 18 41 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 007495 CC 0 0 0 CT 2 0 2 TT 22 20 42 0.045 0.000 0.024 007560 CC 3 0 3 CT 7 4 11 TT 14 14 28 1.642 0.281 1.497 007701 AA 22 20 42 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 007705 AA 0 0 0 AG 0 1 1 GG 23 19 42 0.000 0.013 0.006 007968 GG 1 0 1 GT 8 0 8 TT 14 23 37 0.011 0.000 0.483 008053 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 008058 CC 2 1 3 CT 8 4 12 TT 14 18 32 0.296 1.252 1.447 008066 AA 2 1 3 AC 6 4 10 CC 16 18 34 1.407 1.252 2.863 008179 CC 0 0 0 CT 0 1 1 TT 23 22 45 0.000 0.011 0.006 008345 AA 0 0 0 AT 1 0 1 TT 22 19 41 0.011 0.000 0.006 008368 CC 0 1 1 CT 1 0 1 TT 21 18 39 0.012 19.000 17.537 008460 CC 21 21 42 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 008517 CC 0 1 1 CT 2 2 4 TT 22 18 40 0.045 4.203 3.673 008538 CC 16 18 34 CT 6 3 9 TT 2 1 3 1.407 2.296 3.687 008631 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 008738 CC 2 1 3 CT 6 4 10 TT 16 17 33 1.407 1.144 2.726 008758 AA 0 0 0 AG 1 0 1 GG 23 22 45 0.011 0.000 0.006 008790 CC 1 0 1 CT 4 0 4 TT 19 21 40 1.361 0.000 3.673 008888 CC 2 1 3 CT 7 4 11 TT 15 18 33 0.730 1.252 2.074 008929 AA 20 18 38 AT 4 4 8 TT 0 1 1 0.198 1.252 0.516 009048 AA 2 1 3 AG 6 4 10 GG 16 18 34 1.407 1.252 2.863 009066 AA 2 1 3 AG 6 4 10 GG 16 17 33 1.407 1.144 2.726 009105 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 009662 AA 15 18 33 AT 5 3 8 TT 1 1 2 0.429 2.296 2.181 009681 CC 10 21 31 CG 9 0 9 GG 2 0 2 0.000 0.000 1.375 009746 AA 15 15 30 AG 5 3 8 GG 1 0 1 0.429 0.149 0.264 009810 AA 1 0 1 AG 4 3 7 GG 15 16 31 0.930 0.140 0.569 010111 AA 0 0 0 AC 1 0 1 CC 23 23 46 0.011 0.000 0.005 010131 GG 22 23 45 GT 2 0 2 TT 0 0 0 0.045 0.000 0.022 010143 AA 2 1 3 AT 6 4 10 TT 16 18 34 1.407 1.252 2.863 010157 AA 0 5 5 AG 5 9 14 GG 19 9 28 0.324 0.857 2.206 010212 AA 16 18 34 AG 6 4 10 GG 2 1 3 1.407 1.252 2.863 010252 AA 0 0 0 AG 0 2 2 GG 24 21 45 0.000 0.048 0.022 010358 GG 22 21 43 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 010385 AA 20 22 42 AC 4 0 4 CC 0 0 0 0.198 0.000 0.095 010389 GG 0 0 0 GT 0 1 1 TT 24 22 46 0.000 0.011 0.005 010435 CC 1 1 2 CT 8 4 12 TT 15 17 32 0.003 1.144 0.390 010449 GG 21 23 44 GT 3 0 3 TT 0 0 0 0.107 0.000 0.051 010450 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 010580 CC 0 0 0 CT 1 0 1 TT 23 21 44 0.011 0.000 0.006 010675 GG 21 21 42 GT 1 0 1 TT 0 0 0 0.012 0.000 0.006 010679 AA 19 16 35 AG 4 4 8 GG 0 1 1 0.209 1.037 0.418 010876 AA 16 18 34 AG 6 4 10 GG 2 1 3 1.407 1.252 2.863 010962 AA 4 1 5 AG 8 11 19 GG 12 11 23 1.500 0.741 0.130 010964 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 010974 CC 2 1 3 CT 6 4 10 TT 16 18 34 1.407 1.252 2.863 011004 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 011096 -- 2 1 3 +- 7 4 11 ++ 15 18 33 0.730 1.252 2.074 011110 CC 16 18 34 CT 6 2 8 TT 2 1 3 1.407 4.203 4.704 011197 CC 2 1 3 CG 6 3 9 GG 16 18 34 1.407 2.296 3.687 011318 CC 14 18 32 CT 8 4 12 TT 2 1 3 0.296 1.252 1.447 011477 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 011516 AA 14 18 32 AG 8 4 12 GG 2 1 3 0.296 1.252 1.447 011518 CC 23 23 46 CG 1 0 1 GG 0 0 0 0.011 0.000 0.005 011548 CC 2 1 3 CT 7 4 11 TT 15 18 33 0.730 1.252 2.074 011549 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 011855 CC 0 1 1 CT 3 4 7 TT 21 18 39 0.107 1.252 0.919 011882 GG 23 23 46 GT 1 0 1 TT 0 0 0 0.011 0.000 0.005 011919 AA 15 18 33 AC 7 4 11 CC 2 1 3 0.730 1.252 2.074 011932 CC 19 9 28 CT 5 9 14 TT 0 5 5 0.324 0.857 2.206 011933 AA 0 0 0 AG 3 0 3 GG 21 23 44 0.107 0.000 0.051 011938 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 011971 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 012018 AA 2 1 3 AT 7 4 11 TT 15 18 33 0.730 1.252 2.074 012045 AA 16 18 34 AG 6 4 10 GG 2 1 3 1.407 1.252 2.863 012135 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 012444 AA 16 18 34 AG 6 4 10 GG 2 1 3 1.407 1.252 2.863 012624 CC 21 18 39 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 012660 CC 21 18 39 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 012770 AA 14 13 27 AC 7 3 10 CC 1 1 2 0.011 1.495 0.654 012802 CC 15 13 28 CT 7 3 10 TT 1 1 2 0.025 1.495 0.720 012891 AA 0 0 0 AG 2 0 2 GG 22 21 43 0.045 0.000 0.023 012899 CC 0 0 0 CT 1 0 1 TT 23 21 44 0.011 0.000 0.006 012901 AA 16 16 32 AT 7 4 11 TT 1 1 2 0.044 1.037 0.648 012998 AA 0 0 0 AG 0 1 1 GG 24 21 45 0.000 0.012 0.006 013219 CC 16 16 32 CT 7 4 11 TT 1 1 2 0.044 1.037 0.648 013302 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 013332 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 013397 AA 17 18 35 AT 6 4 10 TT 1 1 2 0.240 1.252 1.214 013630 AA 15 18 33 AG 7 4 11 GG 1 1 2 0.025 1.252 0.705 013686 GG 0 0 0 GT 2 0 2 TT 21 23 44 0.048 0.000 0.023 013735 CC 16 17 33 CT 6 4 10 TT 1 1 2 0.195 1.144 1.069 013809 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 013839 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 014005 AA 22 21 43 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 014075 CC 0 0 0 CG 1 0 1 GG 22 21 43 0.011 0.000 0.006 014482 CC 20 16 36 CT 1 0 1 TT 0 0 0 0.012 0.000 0.007 014605 AA 4 1 5 AT 9 3 12 TT 9 15 24 0.414 1.815 2.657 014791 AA 0 0 0 AG 6 12 18 GG 15 9 24 0.583 3.360 3.124 014929 GG 23 22 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 014942 CC 23 22 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 015285 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 015286 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 015328 AA 0 0 0 AC 0 1 1 CC 24 20 44 0.000 0.012 0.006 015486 CC 10 20 30 CT 9 0 9 TT 3 0 3 0.177 0.000 3.052 015504 CC 22 22 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 015516 GG 0 0 0 GT 1 0 1 TT 22 21 43 0.011 0.000 0.006 015719 CC 22 17 39 CT 0 2 2 TT 0 0 0 0.000 0.059 0.026 015810 CC 9 13 22 CT 9 5 14 TT 4 1 5 0.414 0.294 1.260 016080 AA 7 17 24 AG 11 5 16 GG 5 1 6 0.030 0.571 1.467 016123 CC 0 0 0 CG 1 0 1 GG 23 23 46 0.011 0.000 0.005 016205 AA 0 0 0 AG 2 0 2 GG 22 23 45 0.045 0.000 0.022 016209 CC 0 0 0 CT 0 2 2 TT 24 21 45 0.000 0.048 0.022 016421 AA 0 0 0 AG 2 0 2 GG 21 23 44 0.048 0.000 0.023 016823 CC 0 0 0 CG 3 0 3 GG 21 21 42 0.107 0.000 0.054 016870 CC 7 15 22 CG 11 5 16 GG 6 1 7 0.160 0.429 1.800 017239 CC 10 17 27 CT 10 5 15 TT 4 1 5 0.296 0.571 1.567 017244 GG 20 23 43 GT 4 0 4 TT 0 0 0 0.198 0.000 0.093 017271 AA 3 0 3 AC 10 0 10 CC 10 23 33 0.040 0.000 2.726 017298 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 017306 CC 1 0 1 CG 9 0 9 GG 14 23 37 0.091 0.000 0.253 017336 CC 23 22 45 CT 0 1 1 TT 0 0 0 0.000 0.011 0.006 017360 CC 11 17 28 CT 8 5 13 TT 4 1 5 1.252 0.571 2.792 017368 AA 3 1 4 AC 9 5 14 CC 11 17 28 0.277 0.571 1.232 017413 AA 0 0 0 AC 0 1 1 CC 24 22 46 0.000 0.011 0.005 017524 AA 22 23 45 AT 2 0 2 TT 0 0 0 0.045 0.000 0.022 017742 AA 14 8 22 AG 9 8 17 GG 1 5 6 0.091 1.037 0.821 017782 CC 24 20 44 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 017857 CC 23 21 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 017988 AA 0 0 0 AG 1 0 1 GG 23 20 43 0.011 0.000 0.006 018072 AA 14 14 28 AG 8 6 14 GG 0 0 0 1.086 0.623 1.680 018135 AA 0 1 1 AT 2 3 5 TT 21 16 37 0.048 1.976 2.127 018671 GG 0 0 0 GT 1 0 1 TT 23 22 45 0.011 0.000 0.006 018998 AA 0 0 0 AG 7 7 14 GG 17 16 33 0.700 0.741 1.439 018999 CC 0 0 0 CT 7 7 14 TT 17 16 33 0.700 0.741 1.439 019037 CC 19 9 28 CT 4 9 13 TT 1 5 6 1.361 0.857 3.996 019366 AA 0 1 1 AG 6 3 9 GG 17 13 30 0.517 1.495 0.106 019430 -- 22 15 37 +- 1 5 6 ++ 0 0 0 0.011 0.408 0.242 019739 AA 0 0 0 AT 2 0 2 TT 22 23 45 0.045 0.000 0.022 019891 AA 19 9 28 AG 4 8 12 GG 1 4 5 1.361 0.777 3.480 020108 CC 22 23 45 CT 2 0 2 TT 0 0 0 0.045 0.000 0.022 020397 CC 10 18 28 CT 11 3 14 TT 2 1 3 0.179 2.296 0.450 020608 GG 22 23 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 021333 CC 1 5 6 CT 6 8 14 TT 17 9 26 0.240 1.352 2.862 021451 AA 23 22 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 021480 CC 0 0 0 CT 4 0 4 TT 19 23 42 0.209 0.000 0.095 021762 AA 1 0 1 AG 8 0 8 GG 15 23 38 0.003 0.000 0.516 022095 AA 23 23 46 AT 1 0 1 TT 0 0 0 0.011 0.000 0.005 022781 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 022889 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 023037 AA 0 1 1 AG 6 4 10 GG 18 17 35 0.490 1.144 0.080 023104 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 011096: gta 019430: T