LOCUS IL1F7 9884 bp DNA linear PRI 24-MAR-2005 DEFINITION Homo sapiens. ACCESSION IL1F7 VERSION TMP KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 9884) AUTHORS Rieder,M.J., Johanson,E.J., da Ponte,S.H., Hastings,N.C., Ahearn,M.O., Bertucci,C.B., Wong,M.W., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (24-MAR-2005) Genome Sciences, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA COMMENT To cite this work please use: SeattleSNPs. NHLBI HL66682 Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.gs.washington.edu). FEATURES Location/Qualifiers source 1..9884 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" misc_feature 1..261 /note="Region not scanned for variation" variation 531 /frequency="0.16" /replace="A" variation 534 /frequency="0.01" /replace="T" variation 651 /frequency="0.01" /replace="A" variation 772 /frequency="0.16" /replace="T" variation 816 /frequency="0.16" /replace="T" variation 1033 /frequency="0.16" /replace="T" variation 1082 /frequency="0.09" /replace="A" repeat_region 1158..1237 /rpt_family="MIR" /rpt_type=dispersed variation 1217 /frequency="0.38" /replace="T" variation 1278 /frequency="0.16" /replace="C" variation 1402 /frequency="0.01" /replace="T" repeat_region 1494..1700 /rpt_family="MER1_type" /rpt_type=dispersed variation 1828 /frequency="0.15" /replace="T" variation 1868 /frequency="0.15" /replace="A" variation 1890 /frequency="0.15" /replace="T" variation 1928 /frequency="0.14" /replace="G" variation 1934 /frequency="0.15" /replace="C" gene 2001..7916 /gene="IL1F7" mRNA join(2001..2124,2823..2885,6160..6279,6666..6808, 7595..7916) /gene="IL1F7" /product="IL1F7" CDS join(2043..2124,2823..2885,6160..6279,6666..6808, 7595..7843) /gene="IL1F7" /codon_start=1 /product="interleukin 1 family, member 7 (zeta)" /translation="MSFVGENSGVKMGSEDWEKDEPQCCLEDPAGSPLEPGPSLPTMN FVHTSPKVKNLNPKKFSIHDQDHKVLVLDSGNLIAVPDKNYIRPEIFFALASSLSSAS AEKGSPILLGVSKGEFCLYCDKDKGQSHPSLQLKKEKLMKLAAQKESARRPFIFYRAQ VGSWNMLESAAHPGWFICTSCNCNEPVGVTDKFENRKHIEFSFQPVCKAEMSPSEVSD " variation 2163 /gene="IL1F7" /frequency="0.85" /replace="" variation 2288 /gene="IL1F7" /frequency="0.22" /replace="A" variation 2344 /gene="IL1F7" /frequency="0.14" /replace="A" variation 2403 /gene="IL1F7" /frequency="0.12" /replace="C" variation 2432 /gene="IL1F7" /frequency="0.13" /replace="C" variation 2590 /gene="IL1F7" /frequency="0.16" /replace="T" variation 2652 /gene="IL1F7" /frequency="0.16" /replace="C" variation 2757 /gene="IL1F7" /frequency="0.38" /replace="C" variation 2786 /gene="IL1F7" /frequency="0.01" /replace="A" variation 2832 /gene="IL1F7" /frequency="0.38" /replace="T" variation 2864 /gene="IL1F7" /frequency="0.47" /replace="G" variation 2972 /gene="IL1F7" /frequency="0.38" /replace="A" repeat_region 3348..3429 /rpt_family="MIR" /rpt_type=dispersed variation 3578 /gene="IL1F7" /frequency="0.07" /replace="A" variation 3643 /gene="IL1F7" /frequency="0.38" /replace="G" variation 3725 /gene="IL1F7" /frequency="0.01" /replace="G" variation 3748 /gene="IL1F7" /frequency="0.01" /replace="T" repeat_region 3823..4007 /rpt_family="MER1_type" /rpt_type=dispersed variation 3888 /gene="IL1F7" /frequency="0.16" /replace="G" variation 3933 /gene="IL1F7" /frequency="0.16" /replace="G" variation 3960 /gene="IL1F7" /frequency="0.01" /replace="G" variation 3963 /gene="IL1F7" /frequency="0.17" /replace="A" variation 3976 /gene="IL1F7" /frequency="0.01" /replace="T" variation 4022 /gene="IL1F7" /frequency="0.16" /replace="G" variation 4097 /gene="IL1F7" /frequency="0.01" /replace="A" variation 4119 /gene="IL1F7" /frequency="0.16" /replace="G" variation 4120 /gene="IL1F7" /frequency="0.16" /replace="T" repeat_region 4322..4460 /rpt_family="MER1_type" /rpt_type=dispersed variation 4344 /gene="IL1F7" /frequency="0.17" /replace="T" variation 4422 /gene="IL1F7" /frequency="0.17" /replace="G" repeat_region 4473..4607 /rpt_family="MER1_type" /rpt_type=dispersed repeat_region 4696..4740 /rpt_family="MER1_type" /rpt_type=dispersed variation 4735 /gene="IL1F7" /frequency="0.18" /replace="G" misc_feature 4814..5611 /gene="IL1F7" /note="Region not scanned for variation" variation 5709 /gene="IL1F7" /frequency="0.02" /replace="A" repeat_region 5732..5963 /rpt_family="MIR" /rpt_type=dispersed variation 6723 /gene="IL1F7" /frequency="0.14" /replace="T" variation 6882 /gene="IL1F7" /frequency="0.14" /replace="A" variation 6909 /gene="IL1F7" /frequency="0.01" /replace="G" variation 7026 /gene="IL1F7" /frequency="0.14" /replace="A" variation 7176 /gene="IL1F7" /frequency="0.02" /replace="A" variation 7231 /gene="IL1F7" /frequency="0.19" /replace="" variation 7345 /gene="IL1F7" /frequency="0.03" /replace="A" variation 7416 /gene="IL1F7" /frequency="0.23" /replace="G" variation 7640 /gene="IL1F7" /frequency="0.02" /replace="T" variation 7676 /gene="IL1F7" /frequency="0.14" /replace="C" variation 7838 /gene="IL1F7" /frequency="0.16" /replace="A" variation 8028 /frequency="0.16" /replace="A" variation 8116 /frequency="0.34" /replace="T" variation 8390..8393 /frequency="0.19" /replace="" variation 8412 /frequency="0.18" /replace="C" repeat_region 8660..9133 /rpt_family="MaLR" /rpt_type=dispersed repeat_region 9640..9793 /rpt_family="L1" /rpt_type=dispersed BASE COUNT 2607 a 2293 c 2477 g 2507 t ORIGIN 1 ggcacagtcc ttagcagagt ggcactaccc ccacaggaat ttgtttatac cgttggcatg 61 gaaaatagca ggaaatgagt gatcactgat aactgaggat gctatttatt attggccaaa 121 ggaatacttg tgttgtattt gcataaccac tcacaaactg ttgattacaa atgagtacca 181 gacctagctc cttcaagtaa aggatcctga gaactgaagg caaacagagc tccaggagtc 241 caagacagag ccacagacca cgaggatccc tggcccaggt aggtggtcct cctgcactgg 301 ctttcaaggc caacaggatg gatggggaag tagagtagca tctggccatc tagacccttg 361 ctttttatcc ccactggaag cacatctgaa tttctaaata tgatctctga gacctgccca 421 gaacaccttg ctctcagccc cagtagcagc ctgctctctc ccaggagggc ttccactaac 481 aagtagggca ttgctggagg gccaggcaga cactagctta ggaaatccac caaccctgga 541 aatgctagtc ccttctctga aggctcagaa gactgacttt agagtctaga aaatattggt 601 ccttgggaac agattttgag tgcaaagaga tggacttcag atggccagat gcactgcttc 661 tttagggaat tctgtgaaag ctccctgcat ttatcttaat acaggcagca gatttcatga 721 gtacccccga gggatggccc caggtcctcc agcctgtgag catccttctg tccttcagca 781 gcaccacagt atctttatat gtctttggat acctacgttt ctgccagaca tctcttgctc 841 tgatgttctg gctgccaaat tctctgtcaa gcgcctccaa ttttttgtgt cctttgattt 901 accccaacat gacaaaggca gttgtgcttc atgtattcag ggatactgcc aaaccacaaa 961 caggttaaaa tcaaatagca gatatccctg ttcctaaaga cccatcagct ctacccacct 1021 gctcctgctc accgtcctta ttgttgagtc ctgaagccct tccttgtcat ttttattttt 1081 tgcatgaaca atttagttcc ctttgtctca ctcctaaacc tttctcaaag gattggattt 1141 gtacacaaac tgcctatctc tgcaatctta gaagtgatat gattctgaac aaatcactta 1201 acttttgatt ttttatcggt aagatgggaa taccaatttt tgctccactt ctgtcctatg 1261 ttggcctggg ctgatgttga aagctctcgg tcaactgaga tagggtgtgc agaatttata 1321 tatataaata tatctcctcc aacccctccc aatgaagcaa gtcacgtgag tcaatcctac 1381 cctaagatat tagggattga gcctcctggg acatttggtg gcttaggttt tcatgaaaag 1441 aggttgcaga gcaactgctt tttgttaggc aaagattagg ctactgcaga gactcagcaa 1501 acttctatag aaggtgtcag atggtaagta ttttaggctt tgcttgccag atgatctctc 1561 aactagttaa ccatgctatt gtagcctcga agcagccaga gacaatatgt aaacaagagc 1621 atggctgtgt ttcaataaaa ctttatttaa aaaaacagtc agggaccgga tttggccaaa 1681 ggccatagtg tgccagcccc aagactagag caatgcactt ttaacttttt tattttattt 1741 ttgtaaaatg ccaagatcca caaaaatgct attgcacccc gtgtgttagc actgtgactc 1801 aaggtttggg aaattctgct ttgaaggcgt gatagacagg agagcatggt ctggcccctt 1861 ggtgcctttc tggttgcagc gagcatttca aactacagag caaggccagt ggtctgttca 1921 gcactagaga catgcagcaa ggtgtcctgg ggtgagaaga tgccataact ggtccccttt 1981 ctatctcctt aggtcttgga cttcattcca ttttctgttg agtaataaac tcaacgttga 2041 aaatgtcctt tgtgggggag aactcaggag tgaaaatggg ctctgaggac tgggaaaaag 2101 atgaacccca gtgctgctta gaaggtaagg ttcttgtaga aatctacctc agggccaaag 2161 tgttaattcc tagagcagaa ctttgctagg tgctgtgcac agacccagtt gtttcctgct 2221 gacttgcaca gtaagtgagc tttcaaattt ccctggacaa ataactagac aagagaaatt 2281 ctggaaggga aaaggaagct ttgcttcagt gtccaggcac atcaggtagt agataaaagg 2341 atcgtcctca cctacagatt tggggcttta gcatcctgtt tgccaactgg atggttgcat 2401 atgcttcaaa atgcacctct tccctcccaa cattcccaag tggaagagaa gcctccgatg 2461 agaagcagct ctctaaggct gggctgaaca aatgacccag gcacagggca tctgagtatt 2521 ccatgaggaa cacatttggg tgttgcccat gggggacaat aggaggaggc ttttgaccca 2581 aatgattgtc tactgaggtg tgacgggaga ggcctgtgac atgccagagg ccaaacccgt 2641 gatccagttc atctctattc tatgtttctg aagagggaag ctatgattta atgtcattac 2701 tatcatgctg ctctagtatt tctcagcaca tacacagaag agggaattaa atggtctttg 2761 atacccctaa atccttggaa aatccgaatt gcatatgcta acctcactgc gtctgactgc 2821 agacccggct ggaagccccc tggaaccagg cccaagcctc cccaccatga attttgttca 2881 cacaagtaag gcctcggggt gaggtgatgg gggtggctga ggtgcgaggg tggggatggg 2941 ggatggagcc attgggtcct cttacagggt gggagaattg tagaatgggg acacctaagg 3001 gtgctggatg gggctgaagt ctttcctttg tggaagcaaa tcccattagg agataactct 3061 gggaaagatg agcccgggga ggggcaggtg atgctcacct gctaagaggc acagggcaag 3121 gaagagtttg tgcctgggaa ccttccaggt gcctcttctg accatagcca agagactgga 3181 gacacagacc tcctcccagc actgaggaca aacagccatg gggccagtgg gggtgcaggg 3241 acacccacac cactaagggc tcagggcggc gccttcagag cctgaacctt cctctcatgc 3301 tgccatttga acaccacaac accctaatag gaaactgtta acattgccac tgttcaggtg 3361 tggaaaccga gacagacagt ggagattccc tgccctaggt gacacaggta ataagtgaca 3421 gatgtggaaa tttaaaggta ctataacgtc tgtctgcctg actcaggctt aaggctccca 3481 tcacctcctc ttctcaggac agagtcagga ggcctcagcc tgagccccag ctctagtgca 3541 ggttcatgtg ggaatactga gcctcactag tacaatggca gagaggacca aatgggacca 3601 ggtgtgtaag ggtgcctggc acagttgggg gaggctgctg tcacttctcc accgctgctg 3661 ctgcagttac ctttgatgtt ttagttttgt tgtagttaca ccattgctgg ctttggatct 3721 gcactgtgtc cactccaggt ggaaccacgc acacaagcct ctctgtcggg cctgtcctga 3781 cttctccttg tcagggctgg gatctccttc aaatctggcg gaagtggttc tccaagtctg 3841 gtcctcaaac gtcagcagca tcagcgccta gaagtgttag gaatacacat tcccaggccc 3901 caccacagac ctcctgcctc agaaactcag ggcgctgagg ctctaggggc tgctttaaca 3961 agccttccag gttatcgtga cgcaccttga aagtctgaga gctactgccc tacagaaagt 4021 tactagtgcc ctaaagctgg cgctggcact gatgttactg ctgctgttgg agtacaactt 4081 ccctatagaa aacaactgcc agcaccttaa gaccactcac accttcagag tggccttgag 4141 aaagatttgg ggtcaaggat catgagcgag aacaccactt aagaggatag tgaactagtc 4201 tgcatgtgag acgctgagat cctatgtcag gctgtgatag gagggaaaca gaaaccaaag 4261 gaaagaacag ctttaagaag cgcttaagag gtacaaagta aaatgatggt gctagaaaag 4321 tagcttctta aaaagagcat tttccagtct caccctggac taactgaatg agaatctcag 4381 gagtgtgagg cccaggtatc catggtctta aaatgccacc caccaggtga ttcccagtgt 4441 gcaccagggg tgagagtcac agccttaggc catgccactc aaagggtgtc ttcagaccag 4501 cagcacccac agctctggga gtgcatcaga aagacagagg cttggcacca cccacaccta 4561 ctgaaccata gtttgcaggt gatttcttgc acattaaagt gtgggaaatg gaaaagctta 4621 gagttcagct agctcggtga ctctcagtca acctgcacct gctccatgaa ctcagactgc 4681 ctgggatggg cccagaaaag ctcctgagga gattctgatg taaggcaggg ctgataacca 4741 tggatctcat ctgaccccat atcactgggg agttacttag gatcttgcct ggggccagtc 4801 atctcttcca tagacactga gagtgtccac gatgcttggg gcactacagg gtgggaggtg 4861 gaggatcacg ggtgagtcag ataggaagcc tgctcctggg gagcttacag tgctataggg 4921 cagcgagcca aggatgccaa tacctgtgtg caggtaccac tgacgagtgc agagcgctgc 4981 agcaccagag aggaagctac cctgtgcaga gggggctgag gagggctgca gggagatgac 5041 aggaaagccg gtgttacagg aggagtcctc cccactcttt gggcatgagg agaccaggag 5101 gacattctac agtgagaaac ccaggcagag gccatgtgct tatggcatgg gaaaagaatg 5161 acaccttaga cttattctct acattagaat tgcctaccac agatacccat attatagctt 5221 cacatagtgt ggtggttact gtgttttcat attgtcacat ttgccatttt ccagccaccc 5281 acccattctt gacagtcact ggcccagcct gggggcccct gttctttatc aaacaagtgc 5341 ctgagctctt tgcagaggtg agggtcacct gtccaatcag aggccaggag ggaacgttcc 5401 cttttaagac cctactctag gcaggcctgg cccaaatgag ttgctaggag cccacgccct 5461 aagaaccctc tgagcactgt tgtggctggt cctgctgcta gaagttgttc ctccagggcc 5521 aggtgcaaga tttgtggctt ttcaaaggag ccactaaagc tccagctcag ccttgcaccg 5581 tgctgggctc ctgggggctt cctgcctcca accctcccaa ctcttccatc accgctccct 5641 tagcctggcc agtgcaggga tctgttccac tctaggcact gctgagggaa tgatgcctcc 5701 agtcagaggg tgcaaaaaag agagttaaga aaaacaatga ttataaaaag tcctttttat 5761 acgccagaca ttttctttgc tcaggctaag tgctacttat ttgagtaagc attttagttc 5821 tcataactcc tctctcaagt aggtgctgct attactttca tttcacagat gaggacattg 5881 aggtttggag agacttagta acttgtcctc tgtcctacag cagagctggg atttgaatct 5941 atctgtccaa atctggaacc catttgcttg cacagaaagc ttaattgctt gtcccagcaa 6001 gatagaaagc ctgggagtgg aagaaatatt cagtggctgt gatgtctgag cccacaggca 6061 gggtggagag ctagggctgg ggcccttgga cgtggggaag aaagggctga gtcttccatt 6121 ttcaatgtga agtgttgata tctggtgata ttgatctagg tccaaaggtg aagaacttaa 6181 acccgaagaa attcagcatt catgaccagg atcacaaagt actggtcctg gactctggga 6241 atctcatagc agttccagat aaaaactaca tacgcccagg tgactctcag ttttggctgt 6301 gttttctgcc tccacctagc aggggtaagg cctcctgcta ggtgggctca actccatgct 6361 ataccatgcc ccatctccag caggtggtgg aagcgaggag gagaggcccc agggactagg 6421 gcatcagatg aagggtctct agcaatgacc agatctgaaa gtagtctttc tggaagggct 6481 ggagaaaaag aaggaggcag acacttagac tggaagaaga ggaggcttaa accagtgtga 6541 tggagggaga agtggaccac agagtcaagg gagagggact gtgcatcagg cctgaaaccc 6601 cagcagacag gagagacctt tccctgctct cagaacccac acatgttctg actgtctttt 6661 tccagagatc ttctttgcat tagcctcatc cttgagctca gcctctgcgg agaaaggaag 6721 tccgattctc ctgggggtct ctaaagggga gttttgtctc tactgtgaca aggataaagg 6781 acaaagtcat ccatcccttc agctgaaggt gagagttcta gctcagtttc ctgggccttt 6841 ggctacccca aagtaaaagg ccaagatcct caatgcctct cgctttcctg caaattctta 6901 tcttggccaa tataacaggg acatccacct ttctggaagc accaggcaga agagccccat 6961 aacttcttct ctggttcctt gccccttcta gggaaggagg agagactcct cacagcgggg 7021 agacagcaag gagctgagca cctgttctcc tctcctgggc tcactggtcc tggccctggg 7081 cgggtggcgg tcccctcctg ctgtggccct ccatgtggca agcaacacaa ttgggccagg 7141 accctggcgt gctgctgtag ggtaggaggg tgtgagggag cactcggagg gcagtgtgtc 7201 tgccctgcaa atttagtcct ggatggagca tcctttcact tgaggggaga aatcttagga 7261 agctgaatta gatacagatc taagccatat tctctaattt taaaaactat agagctgaga 7321 ttttggtatc catctgactc ttacgtctct ctctctctct ctctctctca gtttattttt 7381 aatctggggg acaagaaggc ctggaaaaga gggcatgatt gcttatcatc ccttaaatac 7441 cagtaccaag gctgacacgt catctttccc aaggaccatc tgccttctct cttttcctcc 7501 tctcctgtgt aaaggcctgg aggatgagca catgtgctgt gttttcctcc ctctcaaagc 7561 ctgtgctatc taattaatcc cttttacctc acagaaggag aaactgatga agctggctgc 7621 ccaaaaggaa tcagcacgcc ggcccttcat cttttatagg gctcaggtgg gctcctggaa 7681 catgctggag tcggcggctc accccggatg gttcatctgc acctcctgca attgtaatga 7741 gcctgttggg gtgacagata aatttgagaa caggaaacac attgaatttt catttcaacc 7801 agtttgcaaa gctgaaatga gccccagtga ggtcagcgat taggaaactg ccccattgaa 7861 cgccttcctc gctaatttga actaattgta taaaaacacc aaacctgctc actaaacttt 7921 ctgtcattgg gtttcatttc tcattcatgc tttaaggatt tgtgttttta ggatatagca 7981 agaagcttgt ttaattacaa agttctgggt tggaaagaga ccggcttctg cttgtgtact 8041 gctaccctga accatcagac atgcatgtgt gtgtcatatg ctatgatgtg gccagtctga 8101 gtgcaatact tgcagcggga aggagcagct gggtgcatgc tgtgctctag aattagtctt 8161 tcctactggg gtttggtaga ttctgagggc attgatcctg gggcagaagt ggctgagtct 8221 gtgtctaggg tacagtgtgc aagaaagaaa tgtaacagca agtcacaatc cagccaagtg 8281 atagtggaaa aggggtagtt aggtcccaga taaggagcag ggtgacttga cctgtgggaa 8341 aggcacagag acaaggaatc tgggtcagat gacagccagg agaccaggtg agggaggagc 8401 caggtactgt ctgggaggct tgtcaacaag ggcatggtcc tatcactaag cagggctcag 8461 atcctcataa tgggggagtg gaaggctggc cgaacagaaa tcagggcctg gaaacagagt 8521 gagggggtgg agacaggaga ctgaggcttg gaaattagtt tattagtttt agctcttcag 8581 ttacaagcaa taataatagc ttctagctta tttaagcaac aagtatacta caaaaggagc 8641 tttctagaag gatattgggt atattcattt cttactgctg ctgtaacaaa ttaccaccaa 8701 cttagtggtt taaacaatgc aatgtattat cttgcagtta tggaggtcag tctggaatgt 8761 gtctcactgg gccaaaatca aagtatcagc aggatagcat tgctttggga ggctctaggg 8821 gagagtcaat ttccttgcct tttccagctt ccagaggcca cctgcattcc ttggctagtg 8881 gcccactccc atcttcgctg cttgggtttt tctcacactg ctttgctctg accctcctgc 8941 cttcctcttt cacatataag aacgcttgca atttacatcg ggctcacgtc aatatccagg 9001 atactctccc gtctcaaaga ggcttaactt taatcacaga tgcaaagtcc cttttgctat 9061 gtcatgtaac atatacacag ggtctgggga ttagaatgtg gacattttcg gggtgccatt 9121 attctgccta tcatgtgaag taactttcaa aatggaaaga catgctgaag aaaaagtcag 9181 ggatttctgg caggccagaa atgacagaag gcagaaaacg ttggtcccat cactcagatg 9241 ggtaagagcc aatcatgctt tttgtcagtt agcaaaagat tgagattcca agcaaagcat 9301 gcaactgccc tagtttgggt catgtgtcga ctccttggtc agtgaagggc agcacacctt 9361 gatcaatact ccctccaaga ctgtatccaa cgaggccagt gatgttcctc aaagcagagc 9421 tagagagcta atcccaggag agaggcgtgt gggtggtggg caggaagaca aagctcagcc 9481 gtaaaggagt agtagggaca gcaccccagg catggaggct caagtgagat gatacccatg 9541 ggaaaagctc tgataaggtc agctccttct gtttctgatc ctgatggtga tggtgatcaa 9601 caccagccca gtgacaaaaa agtacatagt atatttagta gatgtttccc acacagagaa 9661 atggtaaata ttcaaggcga ggaatactcc aaacatccta ccttgatcat tacacattcc 9721 gtgcatgtaa tgagtacttg catgtatgcc ataaatatgt gaaatattat gtatcactat 9781 ataaaagaaa aaaaaatgtg gccaggtgac atccatattt tggagaggaa ggcatgtctt 9841 cttcataata tcacaaaact attttcacaa caaagacaca gctg //