************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /home/qyi/lib/phase/PHASE2 -d1 il16a.phase.inp il16a.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST il16a.phase.out_freqs : haplotype frequency estimates il16a.phase.out_pairs : most likely haplotype pairs for each individual il16a.phase.out_recom : estimates of recombination parameters il16a.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 66 Positions of loci: 423 521 702 980 1007 1386 1544 1985 2215 2408 3453 3906 3959 4106 4288 4663 4954 5233 5723 6097 6791 6842 7260 7435 7725 8583 9496 10860 11012 11022 11050 11069 11527 11859 12570 12685 12729 12876 13400 13754 13815 13903 14089 14251 14266 14480 14911 14970 14985 15223 15417 15800 16242 16468 16607 17859 18169 18564 18591 18753 18848 18849 18985 19200 19331 20450 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file il16a.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 CCTGIGACTTCAGCGITGCGGTADACTCCTGITACCTGACGAGGCCTATCGGCCGCTTATCCGACC 1.000000 2 CCTGIGACTTCGGCCDCGCGGCGDGTGTCCGICACCTGGCCAAGCCTACCGGTCGCGTAACCAGCC 4.000000 3 CCTGIGACTTTAGCCITGCGATADACTCCTGITGTCTGACCAGGCCTATCGGCCGCTTATCCGACC 1.000000 4 CCTGIGACTTTAGCCITGCGATADACTCCTGITACCTGACCAGGCCTATCGGCCGCTTATCCGATC 1.000000 5 CCTGIGACTTTAGCCITGCGGTADACTCCTGITACCTGACCAGGCCTATCGGCCGCTTATCCGACC 4.000000 6 CCTGIGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCGGTCGCTTAATTAATC 9.000000 7 CCTGIGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCGGTCGCTCAATTAATC 2.000000 8 CCTGIGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCGTTCGCTTAATTAATC 1.000000 9 CCTGIGACTTTGGCCICGCGGCGDGCGCCCGICACCTGGCCAGGCCTATCGTTCGCGTAACCAATC 1.000000 10 CCTGIGACATCGGGGICCTAGCGIGTGCTCGDTGTAGAGAGGGCTTGATCGGTCGCTCAATTAATC 1.000000 11 CCTGIGACATCGGGGICCTAGCGIGTGCTCGDTGTAGAGAGGGCTTGATCGTTCGCTTGACCAACC 2.000000 12 CCTGIGACATCGGGGICCTAGCGIGTGCTCGDTGTAGAGAGGGCTTTATCGTTCGCTTGACCAACC 1.000000 13 CCTGIGACATTGGCCICCCGGCGIGTGCCTTITGTAGAGAGGGCCCTATCGGTCGCTTGACCAACC 1.000000 14 CCTGIGCCTTTGGCCICGCGGCGDGCGCCCGICACCTGGCCAGGCCTATCGTCTATTTAACCAACC 1.000000 15 CCTGIGCCATCGGGGICCTAGCGIGTGCTCGDTGTAGAGAGGGCTTTATCGTTCGCTTGACCAACC 1.000000 16 CCTGIGCAATCGGCCDCGCAGCGDGTGTCCGICACCTGGCCAGGCCTTTCTTCTATTTAACCAACC 1.000000 17 CCTGIGCAATCGGCCDCGCGGCGDGTGTCCGICACCTGGCCAGGCCTTTCGTCTATTTAACCAACC 1.000000 18 CCTGICACTTTAGCCICGCGGCADACTCCTGITACCTGGCCAGGCCTATCGGCCGCTTATCCAACC 5.000000 19 CCTAIGCCACCGGGGICCTAGCGIGTGCTCGDTGTAGAGAGGGCTTTATCGTTCGCTTGACCAACG 3.000000 20 CCCGICACTTTAGCCICGCGGCADACTCCTGITACCTGGCCAGGCCTATCGGCCGCTTATCCAACC 5.000000 21 CTTGIGACTTCGGGGICCTAGCGIGTGCTCGDTGTAGAGAGGGCTTGATCGTTCGCTTGACCAACC 1.000000 22 CTTGIGACTTTAGCCITGCGGTADACTCCTGITACCTGACCAGGCCTATCGGCCGCTTATCCGACC 2.000000 23 CTTGIGACTTTGGCCICGCGGCADGTGCCTGITACCTGGCCAGGCCTATCGGTCGCTCAATTAATC 1.000000 24 CTTGIGACTTTGGCCICGCGGCADGTGCCTGITACCTGGCCAGGCCTATTGGTCGCTCAATTAATC 1.000000 25 CTTGIGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCGGTCGCTTAATTAATC 1.000000 26 CTTGIGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCGGTCGCTCAATTAATC 16.000000 27 CTTGIGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCTGTCGCTCAATTAATC 4.000000 28 CTTGIGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATTGGTCGCTCAATTAATC 2.000000 29 CTTGIGACTTTGCCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCGGTCGCTTAATTAATC 1.000000 30 CTTGIGACTTTGCCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCTGTCGCTTAATTAACC 1.000000 31 CTTGIGACTTTGCCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCTGTCGCTTAATTAATC 3.000000 32 CTTGIGCAATCGGCCDCGCGGCGIGTGCCTTITGTAGAGAGGGCCCTATCGGTCGCTTGACCAACC 1.000000 33 CTTGICACTTTAGCCICGCGGCADACTCCTGITACCTGGCCAGGCCTATCGGCCGCTTATCCAACC 1.000000 34 CTTGICACTTTGGCCICGCGGCGDGCGCCCGICACCTGGCCAGGCCTATCGTCTATTTAACCAACC 1.000000 35 CTTGDGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCGGTCGCTCAATTAATC 2.000000 36 CTTGDGACTTTGGCCICGCGGCADGTGCCTTITACCTGGCCAGGCCTATCTGTCGCTCAATTAATC 1.000000 37 CTTAIGCCATCGGGGICCTAGCGIGTGCTCGDTGTAGAGAGGGCTTTATCGTTCGCTTGACCAACC 1.000000 38 TCTGIGCAATCGGCCDCGCGGCGDGTGTCCGICACCTGGCCAGGCCTTTCGTCTATTTAACCAACC 2.000000 39 TCTGIGCAATCGGCCDCGCGGCGDGTGTCCGICACCTGGCCAGGCCTTTCGTTCGTTTAACCAACC 1.000000 40 TCTGIGCAATCGGCCDCGCGGCGDGTGTCCGICACCTGGCCAGGCCTTTCTTCTATTTAACCAACC 5.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY D001: (3,21) D002: (2,5) D003: (4,17) D004: (5,15) D005: (1,9) D006: (14,26) D007: (2,8) D008: (22,27) D009: (7,31) D010: (6,26) D011: (22,31) D012: (27,37) D013: (2,32) D014: (2,19) D015: (5,13) D016: (5,26) D033: (12,35) D034: (19,26) D035: (19,31) D036: (34,6) D037: (6,23) D038: (6,29) D039: (26,30) D040: (6,25) E001: (26,26) E002: (7,26) E003: (18,39) E004: (26,26) E005: (18,40) E006: (6,20) E007: (26,38) E008: (20,26) E009: (20,36) E010: (26,38) E011: (26,40) E012: (18,28) E013: (10,33) E014: (20,26) E015: (18,27) E016: (20,27) E017: (6,35) E018: (11,40) E019: (24,40) E020: (16,28) E021: (11,40) E022: (6,6) E023: (18,26) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 D001 C (C) T G I G A C T T T A G C C I T G C G (A) T A D A C T C C T G I T G T C T G A C C A G G C C T A T C G G C C G C T T A T C C G A C C C (T) T G I G A C T T C G G G G I C C T A (G) C G I G T G C T C G D T G T A G A G A G G G C T T G A T C G T T C G C T T G A C C A A C C 0 D002 C C T G I G A C T T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A A G C C T A C C G G T C G C G T A A C C A G C C C C T G I G A C T T T A G C C I T G C G G T A D A C T C C T G I T A C C T G A C C A G G C C T A T C G G C C G C T T A T C C G A C C 0 D003 C C T G I G A C T T T A G C C I T G C G A T A D A C T C C T G I T A C C T G A C C A G G C C T A T C G G C C G C T T A T C C G A T C C C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C G T C T A T T T A A C C A A C C 0 D004 C C T G I G (A) C T T T A G C C I T G C G G T A D A C T C C T G I T A C C T G A C C A G G C C T A T C G G C C G C T T A T C C G A C C C C T G I G (C) C A T C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T T A T C G T T C G C T T G A C C A A C C 0 D005 C C T G I G A C T T C A G C G I T G C G G T A D A C T C C T G I T A C C T G A C G A G G C C T A T C G G C C G C T T A T C C G A C C C C T G I G A C T T T G G C C I C G C G G C G D G C G C C C G I C A C C T G G C C A G G C C T A T C G T T C G C G T A A C C A A T C 0 D006 C (C) T G I G (C) C T T T G G C C I C G C G G C G D G C G C C C G I C A C C T G G C C A G G C C T A T C G T C T A T T T A A C C A A C C C (T) T G I G (A) C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 D007 C C T G I G A C T T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A A G C C T A C C G (G) T C G C G T A A C C A G C C C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G (T) T C G C T T A A T T A A T C 0 D008 C T T G I G A C T T T A G C C I T G C G G T A D A C T C C T G I T A C C T G A C C A G G C C T A T C G G C C G C T T A T C C G A C C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C T G T C G C T C A A T T A A T C 0 D009 C (C) T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C (G) G T C G C T C A A T T A A T C C (T) T G I G A C T T T G C C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C (T) G T C G C T T A A T T A A T C 0 D010 C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 D011 C T T G I G A C T T T A G C C I T G C G G T A D A C T C C T G I T A C C T G A C C A G G C C T A T C G G C C G C T T A T C C G A C C C T T G I G A C T T T G C C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C T G T C G C T T A A T T A A T C 0 D012 C T T (G) I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C T G T C G C T C A A T T A A T C C T T (A) I G C C A T C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T T A T C G T T C G C T T G A C C A A C C 0 D013 C (C) T G I G A C T T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A A G C C T A C C G G T C G C G T A A C C A G C C C (T) T G I G C A A T C G G C C D C G C G G C G I G T G C C T T I T G T A G A G A G G G C C C T A T C G G T C G C T T G A C C A A C C 0 D014 C C T G I G A C T T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A A G C C T A C C G G T C G C G T A A C C A G C C C C T A I G C C A C C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T T A T C G T T C G C T T G A C C A A C G 0 D015 C C T G I G A C (T) T T A G C C I T (G) C G G T A D A C T C C T G I T A C C T G A C C A G G C C T A T C G G C C G C T T A T C C G A C C C C T G I G A C (A) T T G G C C I C (C) C G G C G I G T G C C T T I T G T A G A G A G G G C C C T A T C G G T C G C T T G A C C A A C C 0 D016 C [C] T G I G A C T T T A G C C I T G C G G T A D A C T C C T G I T A C C T G A C C A G G C C T A T C G G C C G C T T A T C C G A C C C [T] T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 D033 C C T G (I) G A C A T C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T T A T C G T T C G C T T G A C C A A C C C T T G (D) G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C [G] G T C G C T C A A T T A A T C 0 D034 C C T A I G C C A C C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T T A T C G T T C G C T T G A C C A A C G C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 D035 C C T A I G C C A C C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T T A T C G T T C G C T T G A C C A A C G C T T G I G A C T T T G C C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C T G T C G C T T A A T T A A T C 0 D036 C (T) T G I (C) A C T T T G G C C I C G C G G C G D G C G C C C G I C A C C T G G C C A G G C C T A T C G T C T A T T T A A C C A A C C C (C) T G I (G) A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C 0 D037 C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T (T) I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T (G) I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 D038 C (C) T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C C (T) T G I G A C T T T G C C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C 0 D039 C [T] T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C (G) G T C G C T (C) A A T T A A (T) C C [T] T G I G A C T T T G [C] C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C (T) G T C G C T (T) A A T T A A (C) C 0 D040 C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C C T T G I G A C T T T G [G] C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C 0 E001 C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 E002 C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 E003 C C T G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C G T T C G T T T A A C C A A C C 0 E004 C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 E005 C C T G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C [T] T C T A T T T A A C C A A C C 0 E006 C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C C C C G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C 0 E007 C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C G T C T A T T T A A C C A A C C 0 E008 C C C G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 E009 C C C G (I) C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C (G) G C C G C T T A T C C A A C C C T T G (D) G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C (T) G T C G C T C A A T T A A T C 0 E010 C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C G T C T A T T T A A C C A A C C 0 E011 C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C (G) G T C G C T C A A T T A A T C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C (T) T C T A T T T A A C C A A C C 0 E012 C (C) T G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T (C) G G C C G C T T A T C C A A C C C (T) T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T (T) G G T C G C T C A A T T A A T C 0 E013 C (C) T G I G A C A T C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T G A T C G G T C G C T C A A T T A A T C C (T) T G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C 0 E014 C C C G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 E015 C C T G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C T G T C G C T C A A T T A A T C 0 E016 C C C G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C (G) G C C G C T T A T C C A A C C C T T G I G A C T T T G [G] C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C (T) G T C G C T [C] A A T T A A T C 0 E017 C C T G (I) G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C C T T G (D) G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T C A A T T A A T C 0 E018 C C T G I G A C A T C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T G A T C G T T C G C T T G A C C A A C C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C T T C T A T T T A A C C A A C C 0 E019 C T T G I G A C T T T G G C C I C G C G G C A D G T G C C T G I T A C C T G G C C A G G C C T A T (T) (G) G T C G C T C A A T T A A T C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T (C) (T) T C T A T T T A A C C A A C C 0 E020 C (C) T G I G C A A T C G G C C D C G C (A) G C G D G T G T C C G I C A C C T G G C C A G G C C T T T (C) (T) T C T A T T T A A C C A A C C C (T) T G I G A C T T T G G C C I C G C (G) G C A D G T G C C T T I T A C C T G G C C A G G C C T A T (T) (G) G T C G C T C A A T T A A T C 0 E021 C C T G I G A C A T C G G G G I C C T A G C G I G T G C T C G D T G T A G A G A G G G C T T G A T C G T T C G C T T G A C C A A C C T C T G I G C A A T C G G C C D C G C G G C G D G T G T C C G I C A C C T G G C C A G G C C T T T C T T C T A T T T A A C C A A C C 0 E022 C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T [T] A A T T A A T C C C T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T T A A T T A A T C 0 E023 C (C) T G I C A C T T T A G C C I C G C G G C A D A C T C C T G I T A C C T G G C C A G G C C T A T C G G C C G C T T A T C C A A C C C (T) T G I G A C T T T G G C C I C G C G G C A D G T G C C T T I T A C C T G G C C A G G C C T A T C G G T C G C T [C] A A T T A A T C END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 D001 = (C) = = ? = = = = = T A = C C = T G C G (A) T A D A C T = C T = I = = = C T G A C C A = G C C T = = = = G C = = = = = A T = = G = = = = (T) = = ? = = = = = C G = G G = C C T A (G) C G I G T G = T C = D = = = A G A G A G G = C T T G = = = = T T = = = = = G A = = A = = = 0 D002 = = = = = = = = = = C G = = = D C = = = = C G = G T G T = C = = C = = = = = G = = = A = = = = = C = = = T = = = G = = A = = A G = = = = = = = = = = = = T A = = = I T = = = = T A = A C T C = T = = T = = = = = A = = = G = = = = = T = = = C = = = T = = T = = G A = = 0 D003 = = = = = = A C T = ? ? ? ? = I T = = = A T A = A ? T C = T = = T = = = = = A = = = = = = = = A = = = G = C ? C = = = T = = G = T = = = = = = = C A A = ? ? ? ? = D C = = = G C G = G ? G T = C = = C = = = = = G = = = = = = = = T = = = T = T ? T = = = A = = A = C = 0 D004 = = = = ? = (A) = T = T A = C C = T G C G = T A ? A C T = C T = I = A C C T G A C C A = G C C = = = = = G C = = = = = A T = = G = = = = = = = ? = (C) = A = C G = G G = C C T A = C G ? G T G = T C = D = G T A G A G A G G = C T T = = = = = T T = = = = = G A = = A = = = 0 D005 = = = = = = = = = = C A = = G = T = = = = T A = A ? T = = T = = T = = = = = A = G = = = = = = = = = = G C = = = T = = T = = G = C = = = = = = = = = = = T G = = C = C = = = = C G = G ? G = = C = = C = = = = = G = C = = = = = = = = = = T T = = = G = = A = = A = T = 0 D006 = (C) = = ? = (C) = = = = = = = = = ? = = = = = G = = ? = = = C G = C = = = = = = = = = = = = ? = = = = ? ? C T A T = T = = C C = = C = = (T) = = ? = (A) = = = = = = = = = ? = = = = = A = = ? = = = T T = T = = = = = = = = = = = = ? = = = = ? ? T C G C = C = = T T = = T = 0 D007 = = = = ? = = = = = C = = = = D = = = = = = G = = ? = T = C G = C = = = = = = = = = A = = = = = C = = (G) = ? = = G = = = C C = G C = = = = = ? = = = = = T = = = = I = = = = = = A = = ? = C = T T = T = = = = = = = = = G = = = = = T = = (T) = ? = = T = = = T T = A T = 0 D008 = = = = = = = = = ? = A = = = = T = = = ? ? = = ? C T = = = G = = = = = = = A = = = = = = = = = = = G = C = = = = T = T C C G = C = = = = = = = = = = ? = G = = = = C = = = ? ? = = ? T G = = = T = = = = = = = G = = = = = = = = = = = T = T = = = = C = A T T A = T = 0 D009 = (C) = = ? = = = = = = = G = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? (G) = = ? = = = C = ? ? ? ? ? ? = = (T) = = ? = = = = = = = C = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? (T) = = ? = = = T = ? ? ? ? ? ? = 0 D010 = C = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = T = = = = = = = = = T = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = C = = = = = = = = 0 D011 = = = = = = = = = = = A G = = = T = = = ? ? = = A ? ? = = = G = = = = = = = A = = = = = = = = = = = G = C = = = = = = T C C G = C = = = = = = = = = = = = G C = = = C = = = ? ? = = G ? ? = = = T = = = = = = = G = = = = = = = = = = = T = T = = = = = = A T T A = T = 0 D012 = = = (G) = = A = T = T = = C C = = G C G = = ? D = = = = C T T I = A C C T G = C C A = G C C = = = = T G = = = = = C A = T T = = T = = = = (A) = = C = A = C = = G G = = C T A = = ? I = = = = T C G D = G T A G A = A G G = C T T = = = = G T = = = = = T G = C C = = C = 0 D013 = (C) = = = = A C T = = = = = = = = = = = = = = D = = = T = C G = C A C C T G = C C A A G = = = = C = = = = = = = G = A = = = = G = = = (T) = = = = C A A = = = = = = = = = = = = = = I = = = C = T T = T G T A G A = A G G G C = = = = T = = = = = = = T = G = = = = A = = 0 D014 = = = G = = A = T T = = = C C D = G C G = = ? D = = = T C = = I C A C C T G = C C A A G C C = = C = ? G = = = = G = A = = = = G = C = = = A = = C = A C = = = G G I = C T A = = ? I = = = C T = = D T G T A G A = A G G G C T T = = T = ? T = = = = T = G = = = = A = G 0 D015 = = = = = = = = (T) = = A = = = = T (G) = = = T A D A C T = = = G = = A C C T G A C C A = G = = = = = = = = C = = = = = A T = = G = = = = = = = = = = = (A) = = G = = = = C (C) = = = C G I G T G = = = T = = G T A G A G A G G = C = = = = = = = = T = = = = = G A = = A = = = 0 D016 ? ? ? = = = = = = ? = A = = = = T = = = = T = = A C T = = = G = = ? = = = = A = = = = = = ? = = = = = = C = = = = T = T C C G = C = ? ? ? = = = = = = ? = G = = = = C = = = = C = = G T G = = = T = = ? = = = = G = = = = = = ? = = = = = = T = = = = C = A T T A = T = 0 D033 = C = = (I) = = = A = C = = G G = = C T A = = G I = = = = T C G D = G T A G A = A G G = C T T = = = = ? T = = = = = T G = C C = = C = = T = = (D) = = = T = T = = C C = = G C G = = A D = = = = C T T I = A C C T G = C C A = G C C = = = = ? G = = = = = C A = T T = = T = 0 D034 = C = A = = C = A C C = = G G = = C T A ? ? ? I = = = = T C G D = G T A G A = A G G = C T T ? ? ? ? = T = = = = = T G = C C = = C G = T = G = = A = T T T = = C C = = G C G ? ? ? D = = = = C T T I = A C C T G = C C A = G C C ? ? ? ? = G = = = = = C A = T T = = T C 0 D035 = C = A = = C = A C C = G G G = = C T A ? ? G I = = = = T C G D = G T A G A = ? G G = C T T ? ? ? ? G T = = = = = = G = C C = = C G = T = G = = A = T T T = C C C = = G C G ? ? A D = = = = C T T I = A C C T G = ? C A = G C C ? ? ? ? T G = = = = = = A = T T = = T C 0 D036 = (T) = = = (C) = = = = = = = = = = = = = = = = G = = ? = = = C G = C = = = = = = = = = = = = = = = = = = T C T A T = = = = C C = = C = = (C) = = = (G) = = = = = = = = = = = = = = = = A = = ? = = = T T = T = = = = = = = = = = = = = = = = = = G T C G C = = = = T T = = T = 0 D037 = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = ? ? ? ? ? ? = = = = = ? = = ? = = = T = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = = = ? ? ? ? ? ? = = = = = ? = = ? = = = C = = = = = = = = 0 D038 = (C) = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 D039 ? ? ? = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = = = = (C) = = = = = = (T) = ? ? ? = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) = = = = = = (T) = = = = = = (C) = 0 D040 = C = = = = = ? ? ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = ? ? ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E001 = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = 0 E002 = C = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = 0 E003 C = = = = C A C T = T A = = = I = = = = = = A = A C T C = T = = T = = = = = = = = = = = = = = A = = = G C = = C = = = T = = = = = = T = = = = G C A A = C G = = = D = = = = = = G = G T G T = C = = C = = = = = = = = = = = = = = T = = = T T = = T = = = A = = = = = = 0 E004 = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E005 C = = = = C A C T = T A = = = I = = = = ? ? A = A C T C = T = = T = = = = = = = = = = = = = = A = = ? G = C G C = = = T = = = = = = T = = = = G C A A = C G = = = D = = = = ? ? G = G T G T = C = = C = = = = = = = = = = = = = = T = = ? T = T A T = = = A = = = = = = 0 E006 = = T = = G = = = = = ? = = = = = = = = = = = = G T G = = = T = = = = = = = = = = = = = = = = = = = ? = T = = = = = = A T T = = T = = = C = = C = = = = = ? = = = = = = = = = = = = A C T = = = G = = = = = = = = = = = = = = = = = = = ? = C = = = = = = T C C = = C = 0 E007 C T = = = = ? C T = T = = = = I ? = = = = = A = = = = C = T T = T ? = = = = = = = = = = = = = A = = = G T C G C = C = = T T = = T = T C = = = = ? A A = C = = = = D ? = = = = = G = = = = T = C G = C ? = = = = = = = = = = = = = T = = = T C T A T = T = = C C = = C = 0 E008 = C C = = C = ? ? ? ? A = = ? ? ? = = = = = = = A C T = = = G = = = = = = = = = = = = = = = = = = = = = C = ? = = T = T C C = = C ? = T T = = G = ? ? ? ? G = = ? ? ? = = = = = = = G T G = = = T = = = = = = = = = = = = = = = = = = = = = T = ? = = C = A T T = = T ? 0 E009 = C C = (I) C = = = = = A = = = = = = = = = = = = A C T = = = G = = = = = = = = = = = = = = = = = = = (G) = C = = = = T = T C C = = C = = T T = (D) G = = = = = G = = = = = = = = = = = = G T G = = = T = = = = = = = = = = = = = = = = = = = (T) = T = = = = C = A T T = = T = 0 E010 C T = = ? = A C T = T = = = = I = = = = = = A = = = = C = T T = T = = = = = = = = = = = = = = A = = = G T C ? C = C = = T T = = T = T C = = ? = C A A = C = = = = D = = = = = = G = = = = T = C G = C = = = = = = = = = = = = = = T = = = T C T ? T = T = = C C = = C = 0 E011 C T = = = = A C T = T = = = = I = = = = = = A ? = = = C = T T = T = = = = = = = = = = = = = = A = = (G) G T ? G C = C = = T T = = T = T C = = = = C A A = C = = = = D = = = = = = G ? = = = T = C G = C = = = = = = = = = = = = = = T = = (T) T C ? A T = T = = C C = = C = 0 E012 = (C) = = = C = = = = = A = = = = = = = = = = = = A C T = = = G = = = = = = = = = = = = = = = = = = (C) = = C = = = = T = T C C = = C = = (T) = = = G = = = = = G = = = = = = = = = = = = G T G = = = T = = = = = = = = = = = = = = = = = = (T) = = T = = = = C = A T T = = T = 0 E013 = (C) = = = G = = A = C G = G G = = C T A = = G I ? T G = T C = D = G T A G A = A G G = C T T G = = = ? = T = = = = C = A T T = = T = = (T) = = = C = = T = T A = C C = = G C G = = A D ? C T = C T = I = A C C T G = C C A = G C C T = = = ? = C = = = = T = T C C = = C = 0 E014 = C C = ? C = = = = = A = = = = = = = = = = = = A C T = = = G = = = = = = = = = = = = = = = = = = = ? = C = = = = ? ? T C C = = C = = T T = ? G = = = = = G = = = = = = = = = = = = G T G = = = T = = = = = = = = = = = = = = = = = = = ? = T = = = = ? ? A T T = = T = 0 E015 = C = = = C = = = = = A = = = = = = = = = = ? ? A C T = = = G = = = = = = = = = = = = = = = = = = = G = C ? ? = = T = T C C = = C = = T = = = G = = = = = G = = = = = = = = = = ? ? G T G = = = T = = = = = = = = = = = = = = = = = = = T = T ? ? = = C = A T T = = T = 0 E016 = C C = = C = ? ? ? ? ? ? ? ? ? ? = ? ? ? ? = = A C T = ? ? ? ? = ? = = = = = = = = = = = ? ? ? ? ? (G) = C = ? = = ? ? T C C = = C ? = T T = = G = ? ? ? ? ? ? ? ? ? ? = ? ? ? ? = = G T G = ? ? ? ? = ? = = = = = = = = = = = ? ? ? ? ? (T) = T = ? = = ? ? A T T = = T ? 0 E017 = C = = (I) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = T = = = = = = = = = T = = (D) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = C = = = = = = = = 0 E018 C = = = = = A C = = = = = G G I = C T A = = = I = = = C T = = ? T G T A G A = A G G = C T T G A = = G = T C G C = = G = = = = = = = T = = = = = C A = = = = = C C D = G C G = = = D = = = T C = = ? C A C C T G = C C A = G C C T T = = T = C T A T = = A = = = = = = = 0 E019 C T = = = = A C T = T = = = = I = = = = = = A = = = = C = T = = T = = = = = = = = = = = = = = A = (T) (G) G T C G C = C = ? ? ? ? ? ? = T C = = = = C A A = C = = = = D = = = = = = G = = = = T = C = = C = = = = = = = = = = = = = = T = (C) (T) T C T A T = T = ? ? ? ? ? ? = 0 E020 = (C) = = = = C A A = C = = = = D = = = (A) = = G = = = = T = C G = C = = = = = = = = = = = = = = T = (C) (T) T ? T A T = T = = C C = = C = = (T) = = = = A C T = T = = = = I = = = (G) = = A = = = = C = T T = T = = = = = = = = = = = = = = A = (T) (G) G ? C G C = C = = T T = = T = 0 E021 C = = = = = A C = = ? ? ? ? ? ? ? C T A = = ? I = ? = C ? ? ? ? ? G T A G A = A G G = C T T G A = = G = T C G C = = G = = = = = = = T = = = = = C A = = ? ? ? ? ? ? ? G C G = = ? D = ? = T ? ? ? ? ? A C C T G = C C A = G C C T T = = T = C T A T = = A = = = = = = = 0 E022 = = = = = = = = = = = = = = = = = = = = ? ? = = = ? = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = ? = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = = = = = ? ? = = = = = = = 0 E023 = (C) = = = C = ? ? ? ? ? ? ? ? ? ? = = = = = = = A C T = = = G = = ? ? ? ? ? = = = = = = = ? ? ? ? ? = = C = = = = ? ? T C C = = C ? = (T) = = = G = ? ? ? ? ? ? ? ? ? ? = = = = = = = G T G = = = T = = ? ? ? ? ? = = = = = = = ? ? ? ? ? = = T = = = = ? ? A T T = = T ? END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = 0.61 = = ? = = = = = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 0.82 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = = = 0.95 0.95 0.95 0.95 0.95 0.95 0.95 = 0.95 0.95 0.95 0.95 = = = = 0.95 0.95 = = = = = 0.95 0.95 = = 0.95 = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 1.00 = = = = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = = 1.00 = = = 1.00 = = = = = 1.00 = = = 1.00 = = = 1.00 = = 1.00 = = 1.00 1.00 = = = = = = = = 0.92 1.00 1.00 = ? ? ? ? = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 ? 1.00 1.00 = 1.00 = = 1.00 = = = = = 1.00 = = = = = = = = 1.00 = = = 1.00 = 1.00 ? 1.00 = = = 1.00 = = 1.00 = 1.00 = = = = = ? = 0.72 = 1.00 = 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 1.00 ? 1.00 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 = = 1.00 = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 ? 1.00 = = 1.00 = = 1.00 = = = = = 1.00 = 1.00 = = = = = = = = = = 1.00 1.00 = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = 0.84 = = ? = 0.82 = = = = = = = = = ? = = = = = 1.00 = = ? = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = ? = = = = ? ? 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = = 1.00 = = = = = ? = = = = = 1.00 = = = = 1.00 = = = = = = 1.00 = = ? = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = 1.00 = = = = = 1.00 = = 0.50 = ? = = 1.00 = = = 1.00 1.00 = 1.00 1.00 = = = = = = = = = = ? = 1.00 = = = = 1.00 = = = ? ? = = ? 1.00 1.00 = = = 1.00 = = = = = = = 1.00 = = = = = = = = = = = 0.95 = 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 0.78 = = ? = = = = = = = 1.00 = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? 0.88 = = ? = = = 1.00 = ? ? ? ? ? ? = = 0.92 = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = 1.00 = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = 1.00 = = = ? ? = = 1.00 ? ? = = = 1.00 = = = = = = = 1.00 = = = = = = = = = = = 0.96 = 1.00 = = = = = = 1.00 1.00 1.00 1.00 = 1.00 = = = = 0.71 = = 0.95 = 1.00 = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = = ? 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 = = 0.75 = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 = = = = = = = 1.00 = 1.00 = = = = 1.00 = = = = = 1.00 = = 1.00 = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = ? 1.00 = = = 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = ? 1.00 = = = = 1.00 = 1.00 = = = = 1.00 = 1.00 = = = = = = = = 0.53 = = 1.00 = = = = 1.00 0.52 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = 1.00 = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = = = = = = = 1.00 = = = = = 1.00 1.00 = = 1.00 = = = ? ? ? = = = = = = ? = 1.00 = = = = 1.00 = = = = 1.00 = = 1.00 1.00 1.00 = = = 1.00 = = ? = = = = 1.00 = = = = = = ? = = = = = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 0.93 = = 0.88 = = = 1.00 = 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = = ? 1.00 = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 = = 1.00 1.00 1.00 ? ? ? 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 ? ? ? ? = 1.00 = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = 1.00 = 1.00 = = 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 ? ? 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = ? 1.00 1.00 = 1.00 1.00 1.00 ? ? ? ? 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 = = 1.00 1.00 = 0.51 = = = 0.76 = = = = = = = = = = = = = = = = 1.00 = = ? = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = 1.00 = = 0.98 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.73 = = = = = = = = ? ? ? ? ? ? = = = = = ? = = ? = = = 0.95 = = = = = = = = = 0.87 = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = = = = = ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.79 = = = = = = 0.82 = = = = = = 0.69 = = 1.00 = = = = = ? ? ? ? ? ? ? ? ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 = = = = = = 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 = = 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 1.00 1.00 1.00 = 1.00 1.00 = = = 1.00 = = = = ? ? 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 = = ? 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = 0.99 = = 1.00 = = = = = ? = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = ? = 1.00 = = = = = = 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 = = = = ? 1.00 1.00 = 1.00 = = = = 1.00 ? = = = = = 1.00 = = = = 1.00 = 1.00 1.00 = 1.00 ? = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = = 1.00 = = 1.00 0.99 = = 1.00 = ? ? ? ? 1.00 = = ? ? ? = = = = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = = = 1.00 = ? = = 1.00 = 1.00 1.00 1.00 = = 1.00 ? = 1.00 1.00 = 0.86 1.00 = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = 0.78 = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 = = ? = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = 1.00 = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = = 1.00 1.00 1.00 ? 1.00 = 1.00 = = 1.00 1.00 = = 1.00 = 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = 1.00 ? = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = = 0.76 1.00 1.00 ? 1.00 1.00 = 1.00 = = 1.00 1.00 = = 1.00 = = 0.86 = = = 1.00 = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = 0.74 = = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 = = 0.59 = = = 1.00 = = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = = 1.00 1.00 ? 1.00 1.00 = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = ? = 1.00 = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 = = 1.00 1.00 = ? 1.00 = = = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = ? = 1.00 = = = = ? ? 1.00 1.00 1.00 = = 1.00 = = 0.97 = = = 1.00 = = = = = 1.00 = = = = = = = = = = ? ? 1.00 1.00 1.00 = = = 1.00 = = = = = = = = = = = = = = = = = = = 0.95 = 1.00 ? ? = = 1.00 = 1.00 1.00 1.00 = = 1.00 = = 1.00 1.00 = = 1.00 = ? ? ? ? ? ? ? ? ? ? = ? ? ? ? = = 1.00 1.00 1.00 = ? ? ? ? = ? = = = = = = = = = = = ? ? ? ? ? 0.86 = 1.00 = ? = = ? ? 1.00 1.00 1.00 = = 1.00 ? = 0.94 = = 0.86 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = 0.95 = = = = = = = = 1.00 = = = = = 1.00 1.00 = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = = = 1.00 = = = 1.00 1.00 = = ? 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = = = = 1.00 = = = = 1.00 = 1.00 = = 1.00 = = = = = = = = = = = = = = 1.00 = 0.70 0.85 1.00 1.00 1.00 1.00 1.00 = 1.00 = ? ? ? ? ? ? = = 0.83 = = = = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = = 0.59 = = 1.00 = = = = 1.00 = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = 1.00 = 0.57 0.86 1.00 ? 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = = 1.00 = 1.00 = = = = = 1.00 1.00 = = ? ? ? ? ? ? ? 1.00 1.00 1.00 = = ? 1.00 = ? = 1.00 ? ? ? ? ? 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = ? = = = = = = = = = = = = = = = = = = = = ? ? ? ? ? = = = = = = ? ? = = = = = = = = 0.89 = = = 1.00 = ? ? ? ? ? ? ? ? ? ? = = = = = = = 1.00 1.00 1.00 = = = 1.00 = = ? ? ? ? ? = = = = = = = ? ? ? ? ? = = 1.00 = = = = ? ? 1.00 1.00 1.00 = = 1.00 ? END PHASEPROBS