Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000272 AA 16 15 31 AG 2 5 7 GG 2 2 4 7.389 2.001 7.834 000481 AA 1 0 1 AG 5 0 5 GG 17 23 40 0.571 0.000 2.368 000689 AA 22 23 45 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 001429 GG 20 14 34 GT 0 5 5 TT 0 2 2 0.000 1.802 5.795 001922 GG 20 20 40 GT 1 0 1 TT 1 0 1 9.075 0.000 17.982 002593 AA 12 16 28 AC 3 5 8 CC 7 2 9 11.166 2.200 14.483 003122 CC 2 2 4 CG 0 5 5 GG 20 16 36 22.000 2.200 13.635 003142 CC 0 0 0 CT 1 0 1 TT 22 23 45 0.011 0.000 0.006 003419 CC 17 23 40 CT 4 0 4 TT 0 0 0 0.233 0.000 0.100 003456 -- 17 23 40 +- 5 0 5 ++ 1 0 1 0.571 0.000 2.368 003996 GG 23 22 45 GT 0 0 0 TT 0 1 1 0.000 23.000 46.000 004149 AA 17 22 39 AC 3 0 3 CC 2 0 2 5.290 0.000 12.565 004157 AA 1 0 1 AC 2 0 2 CC 19 22 41 4.455 0.000 9.977 004219 AA 0 0 0 AG 1 0 1 GG 21 23 44 0.012 0.000 0.006 004289 AA 0 2 2 AG 3 5 8 GG 19 16 35 0.118 2.200 2.396 004353 AA 19 23 42 AC 2 0 2 CC 1 0 1 4.455 0.000 10.228 004629 CC 2 1 3 CT 6 5 11 TT 14 16 30 1.099 0.499 1.725 004754 AA 2 1 3 AC 6 5 11 CC 14 16 30 1.099 0.499 1.725 004766 -- 2 0 2 +- 4 0 4 ++ 16 22 38 3.327 0.000 8.910 005124 CC 0 0 0 CT 2 0 2 TT 20 22 42 0.050 0.000 0.024 005708 AA 5 0 5 AG 4 0 4 GG 8 22 30 4.496 0.000 16.568 005901 AA 1 0 1 AG 0 0 0 GG 21 21 42 22.000 0.000 43.000 006158 AA 6 0 6 AT 8 0 8 TT 7 23 30 1.173 0.000 10.237 006250 AA 7 0 7 AG 5 0 5 GG 9 23 32 5.666 0.000 19.422 006251 GG 0 0 0 GT 1 0 1 TT 20 23 43 0.012 0.000 0.006 006411 AA 4 16 20 AC 5 5 10 CC 11 2 13 3.701 2.200 11.727 006697 CC 0 2 2 CG 0 5 5 GG 23 16 39 0.000 2.200 6.790 006866 AA 6 0 6 AC 4 0 4 CC 12 23 35 8.110 0.000 21.795 006936 AA 21 23 44 AG 1 0 1 GG 0 0 0 0.012 0.000 0.006 007140 -- 6 0 6 +- 4 0 4 ++ 12 23 35 8.110 0.000 21.795 007304 CC 3 2 5 CG 4 4 8 GG 14 16 30 4.738 3.327 8.246 007486 CC 9 23 32 CG 5 0 5 GG 9 0 9 7.348 0.000 23.198 007784 GG 16 16 32 GT 4 5 9 TT 3 2 5 5.497 2.200 7.472 008105 AA 1 0 1 AG 0 0 0 GG 22 22 44 23.000 0.000 45.000 008141 CC 19 22 41 CT 3 0 3 TT 1 0 1 2.457 0.000 5.985 008543 AA 15 22 37 AG 2 0 2 GG 1 0 1 3.445 0.000 8.975 008612 AA 6 0 6 AT 0 0 0 TT 13 22 35 19.000 0.000 41.000 008616 -- 6 0 6 +- 4 0 4 ++ 13 22 35 8.746 0.000 21.795 008670 AA 22 22 44 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 008726 CC 12 0 12 CT 5 0 5 TT 6 22 28 6.546 0.000 25.018 008742 AA 9 22 31 AG 5 0 5 GG 9 0 9 7.348 0.000 22.556 009060 AA 9 0 9 AG 5 0 5 GG 9 23 32 7.348 0.000 23.198 009133 CC 0 1 1 CT 0 0 0 TT 23 22 45 0.000 23.000 46.000 009154 CC 22 23 45 CT 0 0 0 TT 1 0 1 23.000 0.000 46.000 009191 GG 9 0 9 GT 5 0 5 TT 9 23 32 7.348 0.000 23.198 009195 AA 23 16 39 AG 0 5 5 GG 0 2 2 0.000 2.200 6.790 009304 AA 20 23 43 AT 0 0 0 TT 2 0 2 22.000 0.000 45.000 009341 AA 2 0 2 AT 3 0 3 TT 18 23 41 5.624 0.000 13.222 009407 CC 9 23 32 CT 5 0 5 TT 9 0 9 7.348 0.000 23.198 009501 CC 9 23 32 CT 5 0 5 TT 9 0 9 7.348 0.000 23.198 009555 AA 23 20 43 AT 0 3 3 TT 0 0 0 0.000 0.112 0.052 009629 AA 9 0 9 AG 5 0 5 GG 9 23 32 7.348 0.000 23.198 009812 AA 9 0 9 AG 5 0 5 GG 9 23 32 7.348 0.000 23.198 009918 AA 1 0 1 AG 0 0 0 GG 22 23 45 23.000 0.000 46.000 010230 CC 16 22 38 CT 4 0 4 TT 3 0 3 5.497 0.000 13.613 010954 CC 0 0 0 CT 1 0 1 TT 21 21 42 0.012 0.000 0.006 011699 CC 12 23 35 CG 4 0 4 GG 6 0 6 8.110 0.000 21.795 011753 AA 1 0 1 AT 0 0 0 TT 21 23 44 22.000 0.000 45.000 011936 AA 18 23 41 AG 2 0 2 GG 1 0 1 4.203 0.000 9.977 012443 CC 8 23 31 CT 5 0 5 TT 9 0 9 6.523 0.000 22.556 012478 GG 0 2 2 GT 0 5 5 TT 22 16 38 0.000 2.200 6.591 012562 CC 4 16 20 CT 5 5 10 TT 13 2 15 4.536 2.200 13.612 013076 AA 3 0 3 AG 4 0 4 GG 14 22 36 4.738 0.000 12.883 013173 CC 18 22 40 CG 0 0 0 GG 2 0 2 20.000 0.000 42.000 014151 CC 18 23 41 CT 4 0 4 TT 1 0 1 1.252 0.000 3.784 014280 AA 0 2 2 AG 0 5 5 GG 23 16 39 0.000 2.200 6.790 014453 -- 8 0 8 +- 5 0 5 ++ 9 23 32 6.523 0.000 21.390 014556 CC 0 2 2 CT 0 5 5 TT 23 16 39 0.000 2.200 6.790 014977 AA 1 0 1 AG 4 0 4 GG 16 23 39 1.037 0.000 3.563 015403 AA 23 16 39 AC 0 5 5 CC 0 2 2 0.000 2.200 6.790 015859 -- 0 2 2 +- 0 3 3 ++ 22 15 37 0.000 4.618 11.908 016076 GG 1 0 1 GT 0 0 0 TT 22 23 45 23.000 0.000 46.000 016099 CC 1 0 1 CT 4 0 4 TT 18 23 41 1.252 0.000 3.784 016115 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 016140 AA 4 16 20 AG 5 5 10 GG 14 2 16 4.949 2.200 14.524 016234 GG 5 0 5 GT 4 0 4 TT 13 23 36 7.425 0.000 19.700 016385 AA 16 16 32 AC 4 5 9 CC 3 2 5 5.497 2.200 7.472 016520 AA 4 16 20 AC 5 5 10 CC 14 2 16 4.949 2.200 14.524 016812 -- 1 2 3 +- 2 0 2 ++ 20 20 40 4.707 22.000 23.693 016869 AA 1 0 1 AG 1 0 1 GG 19 22 41 8.629 0.000 18.427 017184 AA 6 0 6 AG 4 0 4 GG 13 23 36 8.746 0.000 22.371 017239 AA 8 0 8 AC 5 0 5 CC 9 23 32 6.523 0.000 21.390 017271 CC 13 23 36 CT 4 0 4 TT 4 0 4 5.973 0.000 16.590 017348 CC 18 23 41 CT 3 0 3 TT 2 0 2 5.624 0.000 13.222 017375 CC 9 23 32 CT 5 0 5 TT 9 0 9 7.348 0.000 23.198 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 003456: T 004766: AA 007140: T 008616: T 014453: A 015859: GA 016812: A