Site Genotype1 AD-pop ED-pop Total-pop Genotype2 AD-pop ED-pop Total-pop Genotype3 AD-pop ED-pop Total-pop AD-chi2 ED-chi2 Total-chi2 000684 CC 7 18 25 CT 12 3 15 TT 5 2 7 0.001 5.624 2.984 000805 CC 0 0 0 CT 1 0 1 TT 22 22 44 0.011 0.000 0.006 000996 AA 0 0 0 AG 3 0 3 GG 20 23 43 0.112 0.000 0.052 001389 CC 0 0 0 CT 3 1 4 TT 20 22 42 0.112 0.011 0.095 001832 AA 22 22 44 AT 0 1 1 TT 0 0 0 0.000 0.011 0.006 002697 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 002851 AA 0 0 0 AC 2 0 2 CC 22 23 45 0.045 0.000 0.022 003016 CC 16 22 38 CG 7 0 7 GG 0 0 0 0.741 0.000 0.320 004560 CC 0 0 0 CT 3 0 3 TT 18 22 40 0.124 0.000 0.056 004788 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 004796 -- 23 23 46 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.005 004898 AA 20 17 37 AG 3 6 9 GG 0 0 0 0.112 0.517 0.541 004910 CC 19 23 42 CT 4 0 4 TT 0 0 0 0.209 0.000 0.095 005453 * 005868 CC 21 23 44 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 006349 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 006381 CC 22 23 45 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 006479 AA 22 21 43 AC 1 0 1 CC 0 0 0 0.011 0.000 0.006 006654 AA 0 0 0 AC 3 0 3 CC 20 21 41 0.112 0.000 0.055 007601 AA 22 22 44 AG 1 1 2 GG 0 0 0 0.011 0.011 0.023 008127 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 008587 CC 20 19 39 CT 4 3 7 TT 0 1 1 0.198 2.457 0.919 008618 GG 24 20 44 GT 0 2 2 TT 0 1 1 0.000 4.707 10.729 011202 AA 3 4 7 AT 5 6 11 TT 13 12 25 3.099 3.035 6.198 011619 CC 0 0 0 CT 1 0 1 TT 21 22 43 0.012 0.000 0.006 011829 GG 20 20 40 GT 2 1 3 TT 0 1 1 0.050 9.075 5.825 012127 AA 0 0 0 AG 1 0 1 GG 21 22 43 0.012 0.000 0.006 012180 GG 0 0 0 GT 1 0 1 TT 20 22 42 0.012 0.000 0.006 012275 AA 2 4 6 AT 4 5 9 TT 16 13 29 3.327 4.536 8.406 012658 AA 22 22 44 AG 1 1 2 GG 0 0 0 0.011 0.011 0.023 013275 AA 4 4 8 AG 9 6 15 GG 11 13 24 0.780 3.390 3.633 016949 AA 0 0 0 AC 1 0 1 CC 22 23 45 0.011 0.000 0.006 016976 CC 22 23 45 CG 1 0 1 GG 0 0 0 0.011 0.000 0.006 017162 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 017426 CC 24 22 46 CG 0 1 1 GG 0 0 0 0.000 0.011 0.005 017438 AA 15 14 29 AG 7 5 12 GG 2 4 6 0.730 4.949 5.074 017659 AA 0 0 0 AG 1 0 1 GG 20 23 43 0.012 0.000 0.006 018131 CC 0 0 0 CT 1 0 1 TT 20 22 42 0.012 0.000 0.006 018345 AA 20 23 43 AG 3 0 3 GG 0 0 0 0.112 0.000 0.052 018875 AA 0 0 0 AG 0 1 1 GG 23 22 45 0.000 0.011 0.006 018991 AA 10 13 23 AG 10 6 16 GG 3 4 7 0.040 3.390 2.002 023570 AA 1 0 1 AG 1 0 1 GG 21 23 44 9.521 0.000 19.761 023626 CC 0 0 0 CT 1 0 1 TT 19 22 41 0.013 0.000 0.006 024233 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 024407 AA 24 22 46 AT 0 1 1 TT 0 0 0 0.000 0.011 0.005 024595 AA 23 23 46 AT 1 0 1 TT 0 0 0 0.011 0.000 0.005 024853 AA 0 0 0 AG 2 0 2 GG 21 22 43 0.048 0.000 0.023 025238 CC 0 0 0 CT 1 0 1 TT 21 23 44 0.012 0.000 0.006 025473 AA 0 0 0 AT 0 1 1 TT 22 22 44 0.000 0.011 0.006 028394 -- 23 22 45 +- 1 0 1 ++ 0 0 0 0.011 0.000 0.006 029070 AA 0 0 0 AG 1 0 1 GG 22 23 45 0.011 0.000 0.006 029162 AA 23 22 45 AG 0 1 1 GG 0 0 0 0.000 0.011 0.006 029179 CC 22 20 42 CT 1 2 3 TT 0 1 1 0.011 4.707 6.146 029606 CC 0 0 0 CT 1 0 1 TT 23 23 46 0.011 0.000 0.005 029751 CC 13 12 25 CT 7 4 11 TT 3 7 10 1.431 9.272 9.939 030440 AA 0 1 1 AG 0 5 5 GG 24 17 41 0.000 0.571 2.448 030577 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 035235 AA 0 0 0 AG 1 1 2 GG 23 22 45 0.011 0.011 0.022 035399 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 037141 GG 18 12 30 GT 4 6 10 TT 2 5 7 3.840 4.154 9.119 037259 CC 18 12 30 CT 4 6 10 TT 2 5 7 3.840 4.154 9.119 037356 CC 21 23 44 CT 3 0 3 TT 0 0 0 0.107 0.000 0.051 039642 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 040189 AA 0 0 0 AG 3 0 3 GG 20 23 43 0.112 0.000 0.052 040396 AA 13 12 25 AG 7 5 12 GG 3 6 9 1.431 6.546 7.599 040853 AA 22 23 45 AG 0 0 0 GG 1 0 1 23.000 0.000 46.000 041038 AA 0 0 0 AT 1 0 1 TT 21 23 44 0.012 0.000 0.006 041420 CC 0 0 0 CT 5 1 6 TT 17 22 39 0.362 0.011 0.230 041664 AA 19 23 42 AC 3 0 3 CC 0 0 0 0.118 0.000 0.054 045481 -- 0 0 0 +- 1 0 1 ++ 22 22 44 0.011 0.000 0.006 045756 CC 20 20 40 CT 3 0 3 TT 0 0 0 0.112 0.000 0.056 046428 AA 21 23 44 AG 3 0 3 GG 0 0 0 0.107 0.000 0.051 050207 CC 20 23 43 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 051367 AA 3 6 9 AG 8 5 13 GG 13 12 25 0.897 6.546 6.585 051419 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 052298 AA 20 23 43 AC 4 0 4 CC 0 0 0 0.198 0.000 0.093 055901 CC 20 22 42 CT 4 1 5 TT 0 0 0 0.198 0.011 0.148 055984 AA 0 0 0 AT 1 0 1 TT 23 23 46 0.011 0.000 0.005 056246 AA 23 22 45 AG 1 0 1 GG 0 0 0 0.011 0.000 0.006 056689 AA 2 5 7 AG 4 6 10 GG 17 12 29 3.584 4.154 8.755 056891 GG 0 0 0 GT 1 0 1 TT 22 23 45 0.011 0.000 0.006 057032 GG 24 22 46 GT 0 1 1 TT 0 0 0 0.000 0.011 0.005 057044 AA 0 0 0 AG 0 1 1 GG 24 22 46 0.000 0.011 0.005 061405 AA 0 0 0 AT 2 0 2 TT 22 22 44 0.045 0.000 0.023 061956 CC 13 11 24 CG 8 5 13 GG 3 6 9 0.897 5.965 6.214 062474 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 062571 CC 0 0 0 CT 5 0 5 TT 19 23 42 0.324 0.000 0.148 062656 AA 0 0 0 AG 2 1 3 GG 22 22 44 0.045 0.011 0.051 062664 AA 0 0 0 AC 2 0 2 CC 22 23 45 0.045 0.000 0.022 062738 CC 0 0 0 CT 1 0 1 TT 22 20 42 0.011 0.000 0.006 062942 AA 0 0 0 AG 1 0 1 GG 22 22 44 0.011 0.000 0.006 063032 CC 23 23 46 CT 1 0 1 TT 0 0 0 0.011 0.000 0.005 064183 AA 22 23 45 AG 2 0 2 GG 0 0 0 0.045 0.000 0.022 064664 AA 0 0 0 AC 1 0 1 CC 21 22 43 0.012 0.000 0.006 065049 CC 1 3 4 CT 2 6 8 TT 21 14 35 4.959 2.407 7.424 065288 -- 2 5 7 +- 4 6 10 ++ 18 12 30 3.840 4.154 9.119 066022 AA 3 6 9 AG 11 5 16 GG 10 11 21 0.000 5.965 2.957 066106 GG 23 22 45 GT 1 0 1 TT 0 0 0 0.011 0.000 0.006 066236 AA 0 0 0 AT 1 0 1 TT 23 22 45 0.011 0.000 0.006 066375 AA 23 22 45 AT 1 0 1 TT 0 0 0 0.011 0.000 0.006 066661 CC 21 14 35 CG 1 6 7 GG 1 2 3 9.521 1.099 6.181 067827 CC 13 12 25 CT 8 5 13 TT 3 6 9 0.897 6.546 6.585 067936 GG 0 0 0 GT 1 1 2 TT 23 22 45 0.011 0.011 0.022 068074 -- 0 0 0 +- 1 0 1 ++ 23 23 46 0.011 0.000 0.005 068164 -- 0 0 0 +- 1 0 1 ++ 20 22 42 0.012 0.000 0.006 068621 CC 23 22 45 CT 1 1 2 TT 0 0 0 0.011 0.011 0.022 069878 AA 22 21 43 AG 2 0 2 GG 0 0 0 0.045 0.000 0.023 069986 AA 5 11 16 AG 15 4 19 GG 4 6 10 1.526 7.463 0.885 070349 GG 22 22 44 GT 2 0 2 TT 0 0 0 0.045 0.000 0.023 070799 AA 0 0 0 AC 0 1 1 CC 21 21 42 0.000 0.012 0.006 071038 GG 20 22 42 GT 1 0 1 TT 0 0 0 0.012 0.000 0.006 071214 CC 21 21 42 CT 1 1 2 TT 0 0 0 0.012 0.012 0.024 071972 GG 20 21 41 GT 0 1 1 TT 0 0 0 0.000 0.012 0.006 072004 CC 17 22 39 CT 3 0 3 TT 0 0 0 0.131 0.000 0.058 072398 AA 7 11 18 AT 10 5 15 TT 4 6 10 0.016 5.965 3.307 072571 CC 21 21 42 CT 0 1 1 TT 0 0 0 0.000 0.012 0.006 072893 CC 0 0 0 CT 2 0 2 TT 19 23 42 0.053 0.000 0.024 073888 CC 0 0 0 CG 1 0 1 GG 22 22 44 0.011 0.000 0.006 073906 AA 0 0 0 AG 3 0 3 GG 20 22 42 0.112 0.000 0.054 073936 CC 0 0 0 CT 0 1 1 TT 23 21 44 0.000 0.012 0.006 074052 AA 3 6 9 AG 7 4 11 GG 13 12 25 1.431 8.110 8.726 074314 CC 22 22 44 CT 1 0 1 TT 0 0 0 0.011 0.000 0.006 074422 CC 0 0 0 CT 2 0 2 TT 20 22 42 0.050 0.000 0.024 074452 AA 0 0 0 AT 1 0 1 TT 22 23 45 0.011 0.000 0.006 074763 GG 0 0 0 GT 0 1 1 TT 21 22 43 0.000 0.011 0.006 074775 CC 20 23 43 CT 1 0 1 TT 0 0 0 0.012 0.000 0.006 075356 AA 15 12 27 AG 3 6 9 GG 2 5 7 4.618 4.154 9.331 075488 AA 2 4 6 AG 12 6 18 GG 8 13 21 0.702 3.390 0.450 075828 AA 0 0 0 AT 0 1 1 TT 22 22 44 0.000 0.011 0.006 076693 CC 0 0 0 CT 5 1 6 TT 19 22 41 0.324 0.011 0.218 077055 GG 2 5 7 GT 2 6 8 TT 17 11 28 7.843 3.711 11.244 078011 AA 22 20 42 AG 0 1 1 GG 0 0 0 0.000 0.012 0.006 078118 CC 19 16 35 CT 3 5 8 TT 0 0 0 0.118 0.383 0.452 079203 CC 0 0 0 CG 0 1 1 GG 22 22 44 0.000 0.011 0.006 079773 CC 2 3 5 CG 7 5 12 GG 13 14 27 0.505 3.414 3.273 080761 -- 0 0 0 +- 2 0 2 ++ 21 23 44 0.048 0.000 0.023 080781 CC 0 1 1 CT 0 1 1 TT 23 21 44 0.000 9.521 19.761 081020 AA 23 23 46 AG 1 0 1 GG 0 0 0 0.011 0.000 0.005 081780 CC 3 6 9 CT 9 5 14 TT 11 12 23 0.277 6.546 4.984 082726 AA 7 5 12 AG 8 10 18 GG 5 7 12 0.737 0.153 0.857 083981 AA 20 21 41 AG 0 2 2 GG 0 0 0 0.000 0.048 0.024 084117 CC 0 0 0 CT 1 0 1 TT 19 23 42 0.013 0.000 0.006 084488 -- 0 0 0 +- 2 0 2 ++ 17 23 40 0.059 0.000 0.025 084500 AA 19 22 41 AT 0 1 1 TT 0 0 0 0.000 0.011 0.006 084546 CC 0 0 0 CT 1 0 1 TT 18 23 41 0.014 0.000 0.006 085212 GG 0 0 0 GT 1 0 1 TT 21 23 44 0.012 0.000 0.006 085515 AA 10 7 17 AT 11 10 21 TT 3 5 8 0.000 0.153 0.118 086103 AA 0 0 0 AG 4 6 10 GG 19 17 36 0.209 0.517 0.684 086394 CC 21 23 44 CT 2 0 2 TT 0 0 0 0.048 0.000 0.023 086443 CC 0 0 0 CG 4 6 10 GG 19 17 36 0.209 0.517 0.684 087212 -- 0 0 0 +- 0 1 1 ++ 24 22 46 0.000 0.011 0.005 087497 AA 0 0 0 AG 1 0 1 GG 23 23 46 0.011 0.000 0.005 087923 AA 0 0 0 AC 1 1 2 CC 22 22 44 0.011 0.011 0.023 088481 CC 8 7 15 CT 11 11 22 TT 4 5 9 0.004 0.030 0.033 088496 CC 23 22 45 CT 0 1 1 TT 0 0 0 0.000 0.011 0.006 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 004796: G 028394: t 045481: ttc 065288: ttc 068074: a 068164: ctta 080761: aa 084488: t 087212: t Tri-allelic sites: Site Genotype AD-pop ED-pop Total-pop 005453 AA 0 0 0 005453 AC 0 1 1 005453 AT 0 0 0 005453 CC 22 20 42 005453 CT 2 2 4 005453 TT 0 0 0