LOCUS AF375790 7665 bp DNA linear PRI 01-JUN-2001 DEFINITION Homo sapiens interferon gamma (IFNG) gene, complete cds. ACCESSION AF375790 VERSION AF375790.2 GI:14278712 KEYWORDS . SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Primates; Catarrhini; Hominidae; Homo. REFERENCE 1 (bases 1 to 7665) AUTHORS Rieder,M.J., Carrington,D.P., Chung,M.-W., Lee,K.L., Poel,C.L., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (02-MAY-2001) Molecular Biotechnology, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA REFERENCE 2 (bases 1 to 7665) AUTHORS Rieder,M.J., Carrington,D.P., Chung,M.-W., Lee,K.L., Poel,C.L., Yi,Q. and Nickerson,D.A. TITLE Direct Submission JOURNAL Submitted (01-JUN-2001) Molecular Biotechnology, University of Washington, 1705 NE Pacific, Seattle, WA 98195, USA REMARK Sequence update by submitter COMMENT On Jun 1, 2001 this sequence version replaced gi:14030766. To cite this work please use: SeattleSNPs. NHLBI Program for Genomic Applications, UW-FHCRC, Seattle, WA (URL: http://pga.mbt.washington.edu). FEATURES Location/Qualifiers source 1..7665 /organism="Homo sapiens" /mol_type="genomic DNA" /db_xref="taxon:9606" repeat_region 12..123 /rpt_family="MIR" /rpt_type=dispersed variation 78 /frequency="0.39" /replace="C" variation 132 /frequency="0.01" /replace="T" repeat_region 359..467 /rpt_family="MER33" /rpt_type=dispersed repeat_region 473..779 /rpt_family="AluSg" /rpt_type=dispersed variation 628 /frequency="0.06" /replace="C" variation 773 /frequency="0.02" /replace="T" variation 801 /frequency="0.05" /replace="G" repeat_region 803..1024 /rpt_family="MER33" /rpt_type=dispersed variation 950 /frequency="0.01" /replace="T" variation 1386 /frequency="0.02" /replace="T" variation 1414 /frequency="0.01" /replace="G" gene 1586..6538 /gene="IFNG" mRNA join(1586..1807,3047..3115,3211..3393,5820..6538) /gene="IFNG" /product="interferon gamma" CDS join(1694..1807,3047..3115,3211..3393,5820..5954) /gene="IFNG" /codon_start=1 /product="interferon gamma" /protein_id="AAK53058.1" /db_xref="GI:14030767" /translation="MKYTSYILAFQLCIVLGSLGCYCQDPYVKEAENLKKYFNAGHSD VADNGTLFLGILKNWKEESDRKIMQSQIVSFYFKLFKNFKDDQSIQKSVETIKEDMNV KFFNSNKKKRDDFEKLTNYSVTDLNVQRKAIHELIQVMAELSPAAKTGKRKRSQMLFR GRRASQ" variation 1879 /gene="IFNG" /frequency="0.01" /replace="G" variation 1899 /gene="IFNG" /frequency="0.01" /replace="C" variation 2611 /gene="IFNG" /frequency="0.02" /replace="G" variation 3677 /gene="IFNG" /frequency="0.26" /replace="G" repeat_region 3756..3936 /rpt_family="MIR3" /rpt_type=dispersed variation 3890 /gene="IFNG" /frequency="0.23" /replace="C" variation 4042 /gene="IFNG" /frequency="0.03" /replace="A" variation 4100 /gene="IFNG" /frequency="0.02" /replace="C" variation 4271 /gene="IFNG" /frequency="0.02" /replace="G" variation 4505 /gene="IFNG" /frequency="0.02" /replace="A" variation 4854 /gene="IFNG" /frequency="0.17" /replace="-" variation 4925 /gene="IFNG" /frequency="0.44" /replace="T" repeat_region 5197..5295 /rpt_family="MER5B" /rpt_type=dispersed variation 5301 /gene="IFNG" /frequency="0.02" /replace="A" variation 5377 /gene="IFNG" /frequency="0.02" /replace="A" repeat_region 5385..5570 /rpt_family="MIR" /rpt_type=dispersed variation 6050 /gene="IFNG" /frequency="0.01" /replace="G" variation 6077 /gene="IFNG" /frequency="0.01" /replace="A" variation 6134 /gene="IFNG" /frequency="0.01" /replace="T" variation 6493 /gene="IFNG" /frequency="0.02" /replace="G" variation 6572 /frequency="0.02" /replace="T" variation 6701 /frequency="0.03" /replace="A" variation 6855 /frequency="0.02" /replace="C" variation 6864 /frequency="0.32" /replace="G" repeat_region 6913..7083 /rpt_family="MIR" /rpt_type=dispersed variation 7002 /frequency="0.01" /replace="C" variation 7021 /frequency="0.01" /replace="T" repeat_region 7083..7550 /rpt_family="L2" /rpt_type=dispersed variation 7303 /frequency="0.12" /replace="A" variation 7317 /frequency="0.01" /replace="A" variation 7475 /frequency="0.01" /replace="T" repeat_region 7539..7664 /rpt_family="L2" /rpt_type=dispersed variation 7585 /frequency="0.02" /replace="A" ORIGIN 1 acctagcatt ggatgaagat actattatca agccagtttt acaggtaagg agactgagtc 61 atagaagatt taagaagtta actcacaatc atatagctag atagtagagg agtcaggaat 121 caagtttgcc ccataactgc aatactgtta tgtacacagt acaggtagaa atgcaaagtg 181 ggtttgaacc aaagagtgga gggctttttg tgccatccca aagtgttgta cttcataaat 241 aaattacaaa ggaggagaaa gaatcctatt ttttttttgt atctgaaaga caaagaaata 301 aaaagttaaa aagattctct gttagtactg attatttgga acaataaatt gtttagagct 361 atgctgttca atatagtagc acctagcagt atgtgcccat taagcgtttg aaatacgact 421 agaccaaatt gagatgcacc gtaggcttaa aatatacact gtatttcttt cctttttcct 481 tttttccttt tttttttttg agacggaatc ttactctgtc acctaggctg gagtgtagtg 541 gcgcgatctc ggctcactgc aacctccacc ttctgggttc aagccattct cctgcctcag 601 cctccctagt agctgagatt acaggcatac accaccatgc ctggctaatt tttttgtatt 661 tttagtagag atggggtttc accatattgg ctaggctggt ctcaaactcc tgaccttgtg 721 atccacccgc ctcaacctcc caaagtgctg ggattacagg tgtgagccac tgcgtctgga 781 actccccctg ggaatattct ctacactgta tttcaaggat ttaatatgac aaaaagaatg 841 tcaaatacct tattaacaat gtagtatatt gatgcatact gaagtactat ttgggatata 901 ttggtttaaa tacaatatat tttaaaatta tatttacctt ttaaaaaaac ttttattaat 961 gaggctacta gatcatttaa atttacctgt gtggcttgta ttgtatttct actgggcagt 1021 gctgatctag agcaatttga aacttgtggt agatatttta ctaaccaact ctgatgaagg 1081 acttcctcac caaattgttc ttttaaccgc attctttcct tgctttctgg tcatttgcaa 1141 gaaaaatttt aaaaggctgc ccctttgtaa aggtttgaga ggccctagaa tttcgttttt 1201 cacttgttcc caaccacaag caaatgatca atgtgctttg tgaatgaaga gtcaacattt 1261 taccagggcg aagtggggag gtacaaaaaa atttccagtc cttgaatggt gtgaagtaaa 1321 agtgccttca aagaatccca ccagaatggc acaggtgggc ataatgggtc tgtctcatcg 1381 tcaaaggacc caaggagtct aaaggaaact ctaactacaa cacccaaatg ccacaaaacc 1441 ttagttatta atacaaacta tcatccctgc ctatctgtca ccatctcatc ttaaaaaact 1501 tgtgaaaata cgtaatcctc aggagacttc aattaggtat aaataccagc agccagagga 1561 ggtgcagcac attgttctga tcatctgaag atcagctatt agaagagaaa gatcagttaa 1621 gtcctttgga cctgatcagc ttgatacaag aactactgat ttcaacttct ttggcttaat 1681 tctctcggaa acgatgaaat atacaagtta tatcttggct tttcagctct gcatcgtttt 1741 gggttctctt ggctgttact gccaggaccc atatgtaaaa gaagcagaaa accttaagaa 1801 atattttgta agtatgactt tttaatagta cttgtttgtg gttgaaaatg actgaatatc 1861 gacttgctgt agcatctctg ataggctgtc atctcttgta ggcagtcatt ttgagatttg 1921 gtgttatttt gttaattatt gactagatga gttccttgac taaataatct agatattgtt 1981 ttaaccttct gctcagtttg tatagagact taaaagggat ttatgaattt tccaaaagat 2041 gggcataata tgggtatgaa gcataatgat gttaataatt ttgtggtggg aactcattca 2101 gttgtgatag tcaaggagta tgcagattga aaaaaatgat tggttattag tttttgactt 2161 ctcagactct aaggtcaaga ttagcattaa aaaggtaata ggaaatgttt acaaattaaa 2221 gtcaaaaagg tccttaaagc tttggcttaa aaaaataact gataggtgat tttctccaaa 2281 aagtgatttc aacattctgc ttctctatct atattacttg tgaagtattc cggaacttcg 2341 ttgctcactg ggattttgga agaattatga ttctggctaa ggaatgttta aaaattttaa 2401 gtgaattttt tgagtttctt ttaaaatttt attgatggtt aatgaaaagt ttttacattt 2461 taaatatttc attatttgtt taaaacttag ctgttataat tatagctgtc ataataatat 2521 tcagacattc acaattgatt ttattcttac aacacaaaat caaatctcac acacacacac 2581 acacacacac actcgcacat gtttggaact atcttttaaa gctcgtataa taatacccta 2641 caggaaggca cagtagatgt aatagaaacc tgtaccattg gggggcagta ttttatagtg 2701 gggtggcttt gctgtttttt gtttttgtat tttttagcct agcttgaaaa tactttcttt 2761 agcttactat agtttttggg acctttggag tatcagcttt gttgagctca tttgtgacat 2821 tgcaatttaa tggttatatt gggaaataaa aaagctaaaa gaacataata gtctttgtct 2881 atatctcaca taagcctttt gggaatactt attgttagaa ctaagcagaa gagttgaaaa 2941 ggaaatcagt gaatattgtc acatctgagt tcaatgaaac ttgaaatata tttttaaggc 3001 aatttatggg ctaattgtaa accaattttt tctttttttt ttttagaatg caggtcattc 3061 agatgtagcg gataatggaa ctcttttctt aggcattttg aagaattgga aagaggtaag 3121 ctgaatattc ccatttggct aattttcctg ttgcttgctt tctgatggat aaattcacat 3181 catcctctgt ttgtgctctt tccttccaag gagagtgaca gaaaaataat gcagagccaa 3241 attgtctcct tttacttcaa actttttaaa aactttaaag atgaccagag catccaaaag 3301 agtgtggaga ccatcaagga agacatgaat gtcaagtttt tcaatagcaa caaaaagaaa 3361 cgagatgact tcgaaaagct gactaattat tcggtgaggc tatttaaatt ctttctttgg 3421 tttcattgcc gagggtcttg caaagcattt attctccaga aagtagacat tagctattta 3481 acagttgcta aagctatgaa ctcaactcat ggctgaaact ctaccttact atttccattc 3541 gtgtttgggt gactttgcaa agccagtaag agaatcgctg aagtatgtaa tgtagagaaa 3601 tgctggcatt gtaactattg cgtaaagaca ggtgagttga caaatccagt gaagaggaag 3661 taggtgagga agaagcaggg agtactgaga agcagttctc tcattgtccc ttgctcatat 3721 gatggaaatt ctcttacttt gaatgagagg ctgtctgtct taatggaaag agcagtggga 3781 ggagctgaga agatgtgtgt tctcctccca actcagccac caaggaactg tgatgaatca 3841 catggctggc tggggctcag tttcctcatc ttaaaaggaa actgttaggt tcactgtata 3901 agtttgatga ccttctttgc tccaaaactc tacaatgcaa agaatagaaa atgagaatga 3961 gatagaagaa agctacagtc tttgaatagg taccagggac accccactgc aagtctctag 4021 ccaacctatc agattgtact gcccaattag aagcaagaat ggttgctgtt tgtttgtttt 4081 tagggaaaaa tagatagaat ttatacctta tgaaaagatt gttctatcaa ctctctatca 4141 actttcagaa tatctcagct ggagaactcc ttagactcct aagtcttacc tcatgaactt 4201 gtatctttaa gttatggctt ctataaacag aaagataacg ttgaggcata aagacaaatc 4261 atgtttttca aaatgttttc tagaagacaa aggcctctag attcctttgg ggttgacttt 4321 gatataaatg ggctcaaatg agagggacca gggtcttcaa gctagcattt gtgttcttag 4381 gatatgtgct cagctttcac tattgctggg cctgcctctc actcctctca tgtaagcccc 4441 cagaaacaga aaggagagac atggcaacag gtctcctttg gttataaact agacactcag 4501 cacttgtttc taatccagtg gtgcccctgg cttactgttc agtcctggat aagtctctta 4561 gtttcttggt gatgatttga acattggaaa gtaaaatctg tcacttgcaa acacacagct 4621 tgtcgaaaat tttttctact ctgcaggaac tgggccttaa aaaaatgaaa aaaaatctgt 4681 ggtttcttcc ttctggaagc tacaaacctc ctgtttcttg atgggcaatc ttgagtgagc 4741 tctattaatt attattctct ttggctcagt tgctaagcta ttttatgcat gttatgccct 4801 ttgacaatta gtctttagct gtaatccccc agccatcctc agaaatgtgg tgaggtagcc 4861 atagtgttcc caagattaga aaaaatgtaa tggcagagcc aagaggaagg taaatggtcc 4921 acatcttatg aagcatcatc taaatggccc tattggttag agtgaggaga tgcaagtagt 4981 tcaatttgct tgcctagaag gcagggtact ggaaaagttg ttgcaattct taattttaaa 5041 ctttatatat cagtaagcca tatataaata tgattggggg tgtttatttt aaaatctatt 5101 atggaaattg agagactgac ctaatctggg agaaattaaa aattacagtt ttcactcgtt 5161 ttggatttgg tgttttctag ggtacctaac ctagatcagt ggttctcaaa cttaggtgga 5221 tgtcagaatc acctggggag cttagtgaat gcacagggca cagtccttcc acttcatgca 5281 cctggatctc tgaggtcttt gacaggtttc cggattaatc tgctatgcac aacagtgaga 5341 atcattgacc tatagttact catttgatgc atacaggaaa gactgaagta taaagtgata 5401 taattggtag attgatgata gagaggtcat agaaacagtc tcatcctcct ttagatgaga 5461 aaatagaagt tcagagaggt taagtagctg gctcaaggtc agaattattg catgcatgag 5521 attcaaaccc acctttttat gctgactcca caaccaggag tcttttcact atataatttc 5581 aagaattcta tagaagtaga tttaaagata tgtgatggac tccaccacat tatagcacaa 5641 ctagaaatgt aattgtaatt tttagcttca actgctgaag aagtaaatat tgtatattaa 5701 ggtaatacgg tccatttttt aaaggaatac ttttattttc actgaccatc atgacattag 5761 cagaatatcc tgatggctta tatgcctgaa attaattttg ctcttttctt tcccgatagg 5821 taactgactt gaatgtccaa cgcaaagcaa tacatgaact catccaagtg atggctgaac 5881 tgtcgccagc agctaaaaca gggaagcgaa aaaggagtca gatgctgttt cgaggtcgaa 5941 gagcatccca gtaatggttg tcctgcctgc aatatttgaa ttttaaatct aaatctattt 6001 attaatattt aacattattt atatggggaa tatattttta gactcatcaa tcaaataagt 6061 atttataata gcaacttttg tgtaatgaaa atgaatatct attaatatat gtattattta 6121 taattcctat atcctgtgac tgtctcactt aatcctttgt tttctgacta attaggcaag 6181 gctatgtgat tacaaggctt tatctcaggg gccaactagg cagccaacct aagcaagatc 6241 ccatgggttg tgtgtttatt tcacttgatg atacaatgaa cacttataag tgaagtgata 6301 ctatccagtt actgccggtt tgaaaatatg cctgcaatct gagccagtgc tttaatggca 6361 tgtcagacag aacttgaatg tgtcaggtga ccctgatgaa aacatagcat ctcaggagat 6421 ttcatgcctg gtgcttccaa atattgttga caactgtgac tgtacccaaa tggaaagtaa 6481 ctcatttgtt aaaattatca atatctaata tatatgaata aagtgtaagt tcacaactac 6541 ttatgctgtg ttggactttt tctaagtgag acctggagtg aaagaactac ctattaatga 6601 attagtaggg aggggagtct tcttagctgt ggaaatttta gagttgcatt tggttccatt 6661 aaatgtggta tttctttcca ctagcatttt gttggctttc gcttttccag ttagcagctc 6721 tttgaattat ctttctaaga tacagattta attatgtcac tattcaattc agaggttctg 6781 ctatggaatg tagtttaaac tgcttagctt ggcacacaga gatttatttc tagccccttc 6841 tccaccttcc tatttcctcc ttcatttcag aatcttcctc tccctcatcc aatgctggca 6901 aacaccagtg ggggtggagt agtgggtgta agctctaggg agaaggcttg gattggaatc 6961 caagttattc cattacaagt agtgtgacct ttaatacatt atgtatattg tctaagtttc 7021 agctttattg tctgaaaaag aaaaataatt gtgtgttcct cataatattg tggtacgaat 7081 tgattctttc actcaagaaa tatttactgg agtacctact acatgcctgg tgctgttgta 7141 gaccttgaga taccttactc aagcaaaaca gccaaggatc cctgcccctg gggaatttga 7201 aattaagcaa gggacagata aacaatgaac aaaatacata atatgtaagt ctattgcatg 7261 gcattctcta aggtgattgg tgtcatggaa aaatagttaa aggagagcag gacagggaaa 7321 ttaggagtcc tatgtatggt ggagtgggag ggctagaggt ttaaaagggt aattatatgt 7381 ggccttattg aggagatgcc atttgaggaa gcgctttaag aagtaagaga ggtagctatt 7441 tgaattccag gcaaaaggta tatccttgca aaggctctga agagattttc ctggagtggt 7501 agaagaacca gcagaccagt gtgctgggcc cagaagacgg aagagaaaat cagccacact 7561 tgagaggaat tcaggggaag caatgtcctt aggggagggc cagtttatct tttgagaagg 7621 aggaagttga ggatatgatg gatttggtta gttctgggct gtaaa //