************************************************************* **** **** **** Output from PHASE v2.0 **** **** Code by M Stephens, with contributions from N Li **** **** **** ************************************************************* BEGIN COMMAND_LINE /usr/local/genome/lib/phase/PHASE2 -d1 hpgdx.phase.inp hpgdx.phase.out END COMMAND_LINE BEGIN OUTFILE_LIST hpgdx.phase.out_freqs : haplotype frequency estimates hpgdx.phase.out_pairs : most likely haplotype pairs for each individual hpgdx.phase.out_recom : estimates of recombination parameters hpgdx.phase.out_monitor : file for monitoring convergence END OUTFILE_LIST BEGIN INPUT_SUMMARY Number of Individuals: 47 Number of Loci: 122 Positions of loci: 120 353 824 865 981 1208 1225 1278 1309 1584 2166 2269 2435 2769 3039 3100 3286 3393 3530 5326 5567 5595 6193 7699 7704 7920 7928 7970 7978 10588 10637 10742 10790 11071 11197 11429 11517 11678 11871 12253 12594 12603 12636 13292 13928 14171 15303 15313 15783 16220 16378 16859 16861 16888 16892 16893 17272 17283 17484 18340 18349 18552 18666 18800 19437 19973 20336 20790 21289 21420 21800 21837 21880 21966 22302 22415 22489 22505 22737 22859 23305 23398 23552 23596 23957 24035 24130 24294 24328 24339 24483 24769 25073 25183 25428 25729 25770 27368 27876 27933 27949 28067 28378 28633 28891 29268 29608 30157 30921 30943 31321 31353 31365 31397 32624 32910 33122 33646 34217 34218 34367 35164 END INPUT_SUMMARY List of haplotypes found in best reconstruction, with counts. (See file hpgdx.phase.out_freqs for haplotype population frequency estimates) BEGIN LIST_SUMMARY 1 ATGCAAAGTGDTGAACATGGGCTGATCGGACTCGCAGCATACCGAIATCDATAACAAGCCGAGDAGCGACC 4 AADAGCAATTAACGTTCCIGACGIIATTGICTCTCTTCGCGGGGGCATDC 1.000000 2 ATGCAAAGTGDTGAACATGGGCTGATCGGACTCGCAGCATACCGAIATCIGTAGTGAGTGAGGIAACACCC 1 AAIAGCAGTGAACGTCCTDGACGIIGTACDGCCGCCATCCAGATGTATIT 1.000000 3 ATGCAAAGTGDTGAACATGGGCTGATCGGACTCGCAGCATACCGAIATTDATGACAAATGGAGIAACACTT 1 ATIAGTGATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 2.000000 4 ATGCAAAGTGDTGAACATGGGCTGATCGGACTCGCAGCATACCGAICTCIGTAGTGAGTGAGGIAACACCC 1 AAIAGCAGTGAACGTCCTDGACGIIGTACDGCCGCCATCCAGATGTATIT 1.000000 5 ATGCAAAGTGDTGAACATGGGCTGATCGGACTCTTAGCATAAAGADCTCDATAACAGATGGAGIAACACCC 2 AAIGGCAATGGGCCTTTCDAACAIIATAGICTCTTTTCGCGGGGGCATDC 1.000000 6 ATGCAAAGTGDTGAACATGAGCTGATCGGACTCTTGGCATACCGAIATCIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 1.000000 7 ATGCAAGGTGDTGAACATGAGCTGATCGGACTCTTAGCATACCGAIATCDATAACAAGCCGAGDAGCGACC 4 AADAGCAATGGGCCTTTCIAACAIIATAGICTCTTTTCGCGGGGGCATDC 1.000000 8 GTGCAAGGCGITAAACATGAGCTGATCTTTCCGTTAGCAGACCCTICTCDATGACAAATGGAGIAACACTT 1 ATIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 9 GTGCTAGGCGDTGAACATAAGCTGATCGGACTCTTAGCATAAAGADATCIGTAGTGAGTGAGGIAACACCC 1 GAIAGCAGTGAACGTCCTDGACGIIGTACDGCCGCCATCCAGATGTATIT 3.000000 10 GTGCTAGGCGDTGAACATAAGCTGATCGGACTCTTGGCATACCGAIATCDATAACAAGCGGAGIAACGACC 4 AADAGCAATGAGCCTCTCIAACAIIATAGICTCTTTTCGCGGGGGTATDC 1.000000 11 GTGCTAGGCGDTGAACATAAGCTGATCGGACTCTTGGCATACCGAIATCDATGACAAATGGAGIAACACTT 1 ATIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 12 GTGCTAGGCGDTGAACATAAGCTGATCGGACTCTTGGCATACCGAIATCDATGGCAAATCGAGIAGCACCC 1 AAIAGTAATTAACGCTCCDGACGDIATACDCCCTCCATCCAAGGATATIT 1.000000 13 GTGCTAGGCGDTGAACATAAGCTGATCGGACTCTTGGCATACCGAIATCIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 1.000000 14 GTGCTAGGCGDTGAACATAAGCTGAGTTTACTCTTAGCATACCGAICTTIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 2.000000 15 GTGCTAGGCGDTGAACATAAGATGATCGGACTCTTGGCAGACCGAIATTDATAACAAGTGAAGIAACACCC 1 AAIAGCAGTGAACGTCCCDGACGIIATACDCCCTCCATCCAGGTGTATIT 2.000000 16 GTGCTAGGCGDTGAACATAAGATGATCGGACTCTTGGCAGACCGAIACCDATGACAAATGGAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 17 GTGCTAGGCGDTGAATATAGGCTGATCGGACTCGCAGCATACCGAIATTDATGACAAATGGAGIAACACTT 1 ATIAGTGATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 18 GTGCTAGGCGDTGAATATAAGCTGATCGGACTCTTGGCATACCGAIATCDATGACAAATGGAGIAACACTT 1 ATIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 3.000000 19 GTGCTAGGCGDTGAATATAAGCTGATCGGACTCTTGGCATACCGAIATCDAGAACAAATGGAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGTGDIATACDCCCTCCATCCAAGGATATIT 2.000000 20 GTGCTAGGCGDTGAATATAAGCTGATCGGACTCTTGGCATACCGAIATCIAGAACAAATGGAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 21 GTGCTAGGCGDTGAATATAAGCTGATCGGACTCTTGGCATACCGAIATCIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 1.000000 22 GTGCTAGGCGDTGAATATAAACTGATCGGAATCTTAAAGGGCCGAICTCDAGAACAAATGGAGIGACACCC 1 AAIAGTAATTAACGCTCCDGGTGDIATACDCCCTCCATCCAAGGATATIT 1.000000 23 GTGCTAGGCGDTAAACATGAGCTGATCGGACTCTTAGAAGGCCGAIATCDGTAGCAAATCGAGIAGCACCC 1 AAIAGCAATTAACGTCCCDGACAIIATACICTCTCCACCCAGGGGTATDT 1.000000 24 GTGTAAGGCGDCAATCATAAGCTGATCGGACTCTTGGCATACCGAIATCIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 2.000000 25 GTGTAAGGCGDCAATCATAAGATGATCGGACTCTTGGCATGCCGAIACTDATAACAAGTGAAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGTGDIATACDCCCTCCATCCAAGGATATIT 1.000000 26 GTGTAAGGCGDCAATCATAAGATGATCGGACTCTTGGCATGCCGAIACTIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 1.000000 27 GTGTAAGGCGDCAATCATAAGATGATCGGACTCTTGGCAGACCGAIATCIGTAGTGAGTGAGGIAACACCC 1 AAIAGCAGTGAACGTCCTDGACGIIGTACDGCCGCCATCCAGATGTATIT 1.000000 28 GTGTTAGGCGDTAAACATGAGCTGATCGGACTCTTAGAAGGCCGAIATCDAGAACAAATGGAGIGACACCC 1 AAIAGTAATTAACGCTCCDGGTGDIATACDCCCTCCATCCAAGGATATIT 1.000000 29 GTGTTAGGCGDTAAACATGAGCTGATCGGACTCTTAGAAGGCCGAIATCDGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 1.000000 30 GTTCTAGGTGDTGAACATGGGCTGATCGGACTCGCAGCATACCGAIATCIGGAACAAGTGAGGIAACACCC 1 AAIAGCAGTGAACGTCCCDGACGIIATACDCCCGCCATCCAGGTGTATIT 1.000000 31 GTTCTAGGCGDTGAACATGAGCAGATCTTACCGTTAGCAGACCCTICTCDATAACAAGCCGGGDAGCGACC 4 AADAGCAATGGGCCTTTCIAACAIIATAGICTCTTTTCGCGGGGGCATDC 1.000000 32 GTTCTAGACGDTGAACATAAGCAGATCGTTCCGTTAGCAGACCCTICTCDATAACAAGTGAAGIAACACCC 1 AAIAGCAGTGAACGTCCCDGACGIIATACDCCCTCCATCCAGGTGTATIT 1.000000 33 GTTCTAGACGDTGAACATAAGCAGATCGTTCCGTTAGCAGACCCTICTCDATGGCGAGTGGAAIAACACCC 1 GAIAGCAATTAATGTTCCDGGCGDDATACDCCTTCCATCCAAGGATATIT 2.000000 34 GTTCTAGACGDTGAACATAAGCAGATCGTTCCGTTAGCAGACCCTICTCIGTGACAAGTGGAAIAACACCC 1 AAIAGCAATTAATGTTCCDGGCGDDATACDCCTTCCATCCAAGGATATIT 1.000000 35 GTTCTAGACGDTGAACATAAGCAGATCTTTCCGTTAGCAGACCCTICTCDATGACAAATGGAGIAACACCC 1 AAIAGTAATGAACGTCCCDGGCGDIATACDCCCGCCATCCAGGTGTATIT 2.000000 36 GTTCTAGACGDTGAACATAAGCAGATCTTTCCGTTAGCAGACCCTICTCIGTGACAAGTGGAAIAACACCC 1 AAIAGCAATTAATGTTCCDGGCGDDATACDCCTTCCATCCAAGGATATIT 2.000000 37 GTTCTAGACGDTGAACATAAGCAGATCTTTCCGTTAGCAGACCCTICTCIGTGACAAGTGGAAIAACACCC 1 AAIAGCAATTAATGTTCCDGGCGDDGTACDGCCGCCATCCAGATGTATIT 1.000000 38 GTTCTAGACGDTGAACATAAGATGATCGGACTCTTGGCAGACAGAIACCDATAACAAGTCGAGIAACACCT 1 AAIAGCAATGAACGTCCCDGACAIIATACICTCTTTTCGCGGGGGTATDT 1.000000 39 GTTCTAGACGDTGAACATAAGATGATCGGACTCTTGGCAGACCGAIATTDATAACAAGTGAAGIAACACCC 1 AAIAGCAGTGAACGTCCCDGACGIIATACDCCCTCCATCCAGGTGTATIT 1.000000 40 GTTCTAGACGDTGAACATAAGATGATCGGACTCTTGGCAGACCGAIACCDATGACAAATGGAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 41 GTTCTAGACGDTGAACATAAGATGATCGGACTCTTGGCAGACCGAIACCDATGGCGAGTGGAAIAACACCC 1 GAIAGCAATTAATGTTCCDGGCGDDATACDCCTTCCATCCAAGGATATIT 1.000000 42 GTTCTAGACGDTGAACATAAGATGATCGGACTCTTGGCAGACCGAIACTIGTAGTGAGTGAGGIAACACCC 1 AAIAGCAGTGAACGTCCTDGACGIIGTACDGCCGCCATCCAGATGTATIT 1.000000 43 GCGCTGGGCCITAAATATAAGCTGATCGGACTCTTGGCATACCGAIATCDATGACAAATGGAGIAACACTT 1 ATIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 2.000000 44 GCGCTGGGCCITAAATATAAGCTGATCGGACTCTTGGCATACCGAIATCDATGACAAATGGAGIAATACTC 1 AAIAATAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 45 GCGCTGGGCCITAAATATAAGCTGATCGGACTCTTGGCATACCGAIATCIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 1.000000 46 GCTCTGGGCGDTGAACATAAGCTGATCGGACTCTTGGCATACCGAIATCIAGAACAAATGGAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGTGDIATACDCCCTCCATCCAAGGATATIT 1.000000 47 GCTCTGGGCGDTGGACGTAGGCTGATCGGACTCGCAGCATACCGAIATCDGTAACAAGCCGAGDAGCGACC 4 GADAGCAATGGGCCTTTCIAACAIIATTGICTCGCCATCCAGGGGTATIT 2.000000 48 GCTCTGGGCGDTGGACGTAGGCTGATCGGACTCGCAGCATACCGAIATCDGGAACAAGTGAGGIAACACCC 1 AAIAGCAGTGAACGTCCCDGACGIIATACDCCCGCCATCCAGGTGTATIT 2.000000 49 GCTCTGGGCGDTGGACGCAAGCTAGGTTTACTCTTAGCATACCGAIATCDATGACAAATGGAGIAACACTT 1 ATIAGTGATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 50 GCTCTGGGCGDTGGACGCAAGCTAGGTTTACTCTTAGCATACCGAIATCDATGACAAATGGAGIAATACTC 1 AAIAATAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 2.000000 51 GCTCTGGGCGDTGGACGCAAGCTAGGTTTACTCTTAGCATACCGAIATCIAGAACAAATGGAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGTGDIATACDCCCTCCATCCAAGGATATIT 1.000000 52 GCTCTGGGCGDTGGACGCAAGCTAGGTTTACTCTTAGCATACCGAIATTDATAACAAGTGAAGIAACACCC 1 AAIAGCAGTGAACGTCCCDGACGIIATACDCCCTCCATCCAGGTGTATIT 1.000000 53 GCTCTGGGCGDTGGACGCAAGCTAGGTTTACTCTTAGCATACCGAICTCDATGACAAATGGAGIAATACTC 1 AAIAATAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 54 GCTCTGGGCCDTGAACATAAGCTGATCGGACTCTTGGCATACCGAIATCIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 2.000000 55 GCTCTGGGCCITAAACATGAGCTGATCGGACTCTTAGCATAAAGADCTCDATGACAAATGGAGIAACACTT 1 ATIAGTAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 56 GCTCTGGGCCITAAACATGAGCTGATCGGACTCTTAGCATAAAGADCTCDGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 2.000000 57 GCTCTGGGCCITAAACATGAGCTGATCGGACTCTTAGCATAAAGADCTCIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 2.000000 58 GCTCTGGGCCITAAACATGAGCTGATCGGACTCTTAGCATAAAGADCTTDATAACAGATGGAGIAACACCC 2 AAIGGCAATTAACGTTCCIGACGIIATTGICTCTTTTCGCGGGGGCATDC 5.000000 59 GCTCTGGGCCITAAACATGAGCTGATCGGACTCTTAGCATAAAGADCTTIGTAACAGATGAAGIAACACCC 4 AAIAGCAGCGAACGTCCCDGACGIIACACDCCCGCCATCTAGGGGTGCIT 1.000000 60 GCTCTGGGCCITAAACATGAACTGATCGGAATCTTAAAGGGCCGAIACCDATGACAAATGGAGIAATACTC 1 AAIAATAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 61 GCTCTGGGCCITAAACATGAACTGATCGGAATCTTAAAGGGCCGAICTCDATGACAAATGGAGIAATACTC 1 AAIAATAATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 3.000000 62 GCTCTGGGCCITAAACATGAACTGATCGGAATCTTAAAGGGCCGAICTCDAGAACAAATGGAGIAACACCC 1 AAIAGTAATTAACGCTCCDGGTGDIATACDCCCTCCATCCAAGGATATIT 2.000000 63 GCTCTGGGCCITAAACATGAACTGATCGGAATCTTAAAGGGCCGAICTCDAGAACAAATGGAGIAACACCC 1 AAIAGTGATTAACGCTCCDGGCGDIATACDCCCTCCATCCAAGGATATIT 1.000000 64 GCTCTGGGCCITAAACATGAACTGATCGGAATCTTAAAGGGCCGAICTCDAGAACAAATGGAGIGACACCC 1 AAIAGTAATTAACGCTCCIGGTGDIATACDCCCTCCATCCAAGGATATIT 4.000000 65 GCTCTGGGCCITAAACATGAACTGATCGGAATCTTAAAGGGCCGAICTCIGTAGTGAGTGAGGIAACACCC 1 GAIAGCAGTGAACGTCCTDGACGIIGTACDGCCGCCATCCAGATGTATIT 1.000000 END LIST_SUMMARY Summary of best reconstruction (numbers refer to the list of haplotypes given above) BEGIN BESTPAIRS_SUMMARY DY01: (1,5) DY02: (4,8) DY03: (10,48) DY04: (27,37) DY05: (33,36) DY06: (31,32) DY07: (9,40) DY08: (12,39) DY09: (13,35) DY10: (34,53) DY11: (26,35) DY12: (11,42) DY13: (7,38) DY14: (9,58) DY15: (15,24) DY16: (47,65) DY17: (16,24) DY18: (36,47) DY19: (6,14) DY20: (2,9) DY21: (14,33) DY22: (15,25) DY23: (30,52) DY24: (41,48) E101: (28,62) E102: (19,46) E103: (56,61) E104: (43,58) E105: (22,63) E106: (18,50) E107: (18,21) E108: (44,58) E109: (23,61) E110: (3,43) E111: (19,56) E112: (29,64) E113: (49,58) E114: (45,64) E115: (50,55) E116: (57,58) E117: (20,54) E118: (17,61) E119: (3,51) E120: (54,57) E121: (18,64) E122: (60,64) E123: (59,62) END BESTPAIRS_SUMMARY Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in []: BEGIN BESTPAIRS1 0 DY01 A T G C A A A G T G D T G A A C A T G G G C T G A T C G G A C T C (G) (C) A G C A T A (C) (C) G A (I) (A) T C D A T A A C A A G C C G A G D A G C G A C [C] 4 A A D A G C A A T T A A C G T T C C I G A C G I I A T T G I C T C T C T T C G C G G G G G C A T D C A T G C A A A G T G D T G A A C A T G G G C T G A T C G G A C T C (T) (T) A G C A T A (A) (A) G A (D) (C) T C D A T A A C A G A T G G A G I A A C A C C C 2 A A I G G C A A T G G G C C T T T C D A A C A I I A T A G I C T C T T T T C G C G G G G G C A T D C 0 DY02 (A) T G C A A (A) G (T) G (D) T (G) A A C A T G (G) G C T G A T C (G) (G) (A) C (T) (C) (G) (C) A G C A (T) A C C (G) (A) I C T C I G T A G T G A G T G A G G I A A C A C C C 1 [A] A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T (G) T G C A A (G) G (C) [G] (I) T (A) A A C A T G (A) G C T G A T C (T) (T) (T) C (C) (G) (T) (T) A G C A (G) A C C (C) (T) I C T C D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 DY03 G T G C T A G G C G D T G A A C A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D [A] T A A C A A G C G G A G I A A C [G] A C C 4 A A D A G C A A T G A G C C T C T C I A A C A I I A T A G I C T C T T T T C G C G G G G G T A T D C G C T C T G G G C G D T G G A C G T A G G C T G A T C G G A C T C G C A G C A T A C C G A I A T C D G G A A C A A G T G A G G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C G C C A T C C A G G T G T A T I T 0 DY04 G T (G) (T) (A) A G (G) C G D (C) (A) A (T) C A T A A G A T G A T C G G A C T C T T G G C A G A C C G A I A T C I G T A G T G A G T G A G G I A A C A C C C 1 A A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T G T (T) (C) (T) A G (A) C G D (T) (G) A (A) C A T A A G C A G A T C T T T C C G T T A G C A G A C C C T I C T C I G T G A C A A G T G G A A I A A C A C C C 1 A A I A G C A A T T A A T G T T C C D G G C G D D G T A C D G C C G C C A T C C A G A T G T A T I T 0 DY05 G T T C T A G A C G D T G A A C A T A A G C A G A T C G T T C C G T T A G C A G A C C C T I C T C D A T G G C G A G T G G A A I A A C A C C C 1 G A I A G C A A T T A A T G T T C C D G G C G D D A T A C D C C T T C C A T C C A A G G A T A T I T G T T C T A G A C G D T G A A C A T A A G C A G A T C T T T C C G T T A G C A G A C C C T I C T C I G T G A C A A G T G G A A I A A C A C C C 1 A A I A G C A A T T A A T G T T C C D G G C G D D A T A C D C C T T C C A T C C A A G G A T A T I T 0 DY06 G T T C T A G (G) C G D T G A A C A T (G) A G C A G A T C (T) T (A) C C G T T A G C A G A C C C T I C T C D A T A A C A A G C C G (G) G D A G C G A C C 4 A A D A G C A A T G G G C C T T T C I A A C A I I A T A G I C T C T T T T C G C G G G G G C A T D C G T T C T A G (A) C G D T G A A C A T (A) A G C A G A T C (G) T (T) C C G T T A G C A G A C C C T I C T C D A T A A C A A G T G A (A) G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C T C C A T C C A G G T G T A T I T 0 DY07 G T (G) C T A G (G) C G D T G A A C A T A A G C T G A T C G G A C T C T T A G C A T A A A G A D A T C I G T A G T G A G T G A G G I A A C A C C C 1 G A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T G T (T) C T A G (A) C G D T G A A C A T A A G A T G A T C G G A C T C T T G G C A G A C C G A I A C C D A T G A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 DY08 G T G C T A G G C G D T G A A C A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D [A] T G G C A A A T C G A G I A G C A C C C 1 A [A] I A G T A A T T A A C G C T C C D G A C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G T T C T A G A C G D T G A A C A T A A G A T G A T C G G A C T C T T G G C A G A C C G A I A T T D A T A A C A A G T G A A G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C T C C A T C C A G G T G T A T I T 0 DY09 G T G C T A G G C G D T G A A C A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G T T C T A G A C G D T G A A C A T A A G C A G A T C T T T C C G T T A G C A G A C C C T I C T C D A T G A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T G A A C G T C C C D G G C G D I A T A C D C C C G C C A T C C A G G T G T A T I T 0 DY10 G T T C T A G A C G D T G A A C A T A A G C A G A T C G T T C C G T T A G C A G A C C C T I C T C (I) (G) T G A C A A (G) T G G A (A) I A A (C) A C (C) C 1 A A I A (G) (C) A A T T A A (T) G (T) T C C D G G C G D (D) A T A C D C C (T) T C C A T C C A A G G A T A T I T G C T C T G G G C G D T G G A C G C A A G C T A G G T T T A C T C T T A G C A T A C C G A I C T C (D) (A) T G A C A A (A) T G G A (G) I A A (T) A C (T) C 1 A A I A (A) (T) A A T T A A (C) G (C) T C C D G G C G D (I) A T A C D C C (C) T C C A T C C A A G G A T A T I T 0 DY11 G T G T A A G G C G D C A A T C A T A A G A T G A T C G G A C T C T T G G C A T G C C G A I A C T [I] [G] T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G T T C T A G A C G D T G A A C A T A A G C A G A T C T T T C C G T T A G C A G A C C C T I C T C D A T G A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T G A A C G T C C C D G G C G D I A T A C D C C C G C C A T C C A G G T G T A T I T 0 DY12 G T (G) C T A G (G) C G D T G A A C A T A A G (C) T G A T C G G A C T C T T G G C A (T) A C C G A I A (T) (C) D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G T (T) C T A G (A) C G D T G A A C A T A A G (A) T G A T C G G A C T C T T G G C A (G) A C C G A I A (C) (T) I G T A G T G A G T G A G G I A A C A C C C 1 A A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T 0 DY13 (A) T (G) C (A) A G (G) (T) G D T G A A C A T (G) A G (C) T G A T C G G A C T C T T (A) G C A (T) A C (C) G A I A (T) C D A T A A C A A G C C G A G D A G C G A C (C) 4 A A D A G C A A T G G G C C T T T C I A A C A I I A T A G I C T C T T T T C G C G G G G G C A T D C (G) T (T) C (T) A G (A) (C) G D T G A A C A T (A) A G (A) T G A T C G G A C T C T T (G) G C A (G) A C (A) G A I A (C) C D A T A A C A A G T C G A G I A A C A C C (T) 1 A A I A G C A A T G A A C G T C C C D G A C A I I A T A C I C T C T T T T C G C G G G G G T A T D T 0 DY14 G T G C T A G G C G D T G A A C A T A A G C T G A T C G G A C T C T T A G C A T A A A G A D A T C I G T A G T G A G T G A G G I A A C A C C C 1 G A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T T D A T A A C A G A T G G A G I A A C A C C C 2 A A I G G C A A T T A A C G T T C C I G A C G I I A T T G I C T C T T T T C G C G G G G G C A T D C 0 DY15 G T G C T A G G C G D T G A A C A T A A G A T G A T C G G A C T C T T G G C A G A C C G A I A T T D A T A A C A A G T G A A G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C T C C A T C C A G G T G T A T I T G T G T A A G G C G D C A A T C A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T 0 DY16 G C T C T G G G C G D T G G A C G T A G G C T G A T C G G A C T C G C A G C A T A C C G A I A T C D G T A A C A A G C C G A G D A G C G A C C 4 G A D A G C A A T G G G C C T T [T] C I A A C A I I A T T G I C T C G C C A T C C A G G G G T A T I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C I G T A G T G A G T G A G G I A A C A C C C 1 [G] A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T 0 DY17 G T G C T A G G C G D T G A A C A T A A G A T G A T C G G A C T C T T G G C A G A C C G A I A C C D A T G A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G T G T A A G G C G D C A A T C A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T 0 DY18 G T T C T A G A C G D T G A A C A T A A G C A G A T C T T T C C G T T A G C A G A C C C T I C T C I G T G A C A A G T G G A A I A A C A C C C 1 A A I A G C A A T T A A T G T T C C D G G C G D D A T A C D C C T T C C A T C C A A G G A T A T I T G C T C T G G G C G D T G G A C G T A G G C T G A T C G G A C T C G C A G C A T A C C G A I A T C D G T A A C A A G C C G A G D A G C G A C C 4 G A D A G C A A T G G G C C T T [T] C I A A C A I I A T T G I C T C G C C A T C C A G G G G T A T I T 0 DY19 (A) T G C (A) A (A) G (T) G D T G A A C A T (G) A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T (G) T G C (T) A (G) G (C) G D T G A A C A T (A) A G C T G A G T T T A C T C T T A G C A T A C C G A I C T T I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T 0 DY20 A T G C A A A G T G D T G A A C A T G G G C T G A T C G G A C T C G C A G C A T A C C G A I A T C I G T A G T G A G T G A G G I A A C A C C C 1 A A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T G T G C T A G G C G D T G A A C A T A A G C T G A T C G G A C T C T T A G C A T A A A G A D A T C I G T A G T G A G T G A G G I A A C A C C C 1 G A I A G C A G T G A A C G T C C T D G A C G I I G T A C D G C C G C C A T C C A G A T G T A T I T 0 DY21 G T G C T A G G C G D T G A A C A T A A G C T G A G T T T A C T C T T A G C A T A C C G A I C T T I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G T T C T A G A C G D T G A A C A T A A G C A G A T C G T T C C G T T A G C A G A C C C T I C T C D A T G G C G A G T G G A A I A A C A C C C 1 G A I A G C A A T T A A T G T T C C D G G C G D D A T A C D C C T T C C A T C C A A G G A T A T I T 0 DY22 G T G C T A G G C G D T G A A C A T A A G A T G A T C G G A C T C T T G G C A G A C C G A I A T T D A T A A C A A G T G A A G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C T C C A T C C A G G T G T A T I T G T G T A A G G C G D C A A T C A T A A G A T G A T C G G A C T C T T G G C A T G C C G A I A C T D A T A A C A [A] [G] T G A A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 DY23 G T T C T A G G T G D T G A A C A T G G G C T G A T C G G A C T C G C A G C A T A C C G A I A T C (I) G G A A C A A G T G A G G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C G C C A T C C A G G T G T A T I T G C T C T G G G C G D T G G A C G C A A G C T A G G T T T A C T C T T A G C A T A C C G A I A T T (D) A T A A C A A G T G A A G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C T C C A T C C A G G T G T A T I T 0 DY24 G T T C T A G A C G D T G A A C A T A A G A T G A T C G G A C T C T T G G C A G A C C G A I A C C D A T G G C G A G T G G A A I A A C A C C C 1 G A I A G C A A T T A A T G T T C C D G G C G D D A T A C D C C T T C C A T C C A A G G A T A T I T G C T C T G G G C G D T G G A C G T A G G C T G A T C G G A C T C G C A G C A T A C C G A I A T C D G G A A C A A G T G A G G I A A C A C C C 1 A A I A G C A G T G A A C G T C C C D G A C G I I A T A C D C C C G C C A T C C A G G T G T A T I T 0 E101 G T G T T A G G C G D T A A A C A T G A G C T G A T C G G A C T C T T A G A A G G C C G A I A T C D A G A A C A A A T G G A G I G A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A G A A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E102 G T G C T A G G C G D T G A A (T) A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C (D) A G A A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C G D T G A A (C) A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C (I) A G A A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E103 G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T C D G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A T G A C A A A T G G A G I A A T A C T C 1 A A I A A T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E104 G C G C T G G G C C I T A A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T T D A T A A C A G A T G G A G I A A C A C C C 2 A A I G G C A A T T A A C G T T C C I G A C G I I A T T G I C T C T T T T C G C G G G G G C A T D C 0 E105 G T G C T A G G C G D T G A A T A T A A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A G A A C A A A T G G A G I (G) A C A C C C 1 A A I A G T (A) A T T A A C G C T C C D G G (T) G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A G A A C A A A T G G A G I (A) A C A C C C 1 A A I A G T (G) A T T A A C G C T C C D G G (C) G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E106 G T G C T A G G C G D T G A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C G D T G G A C G C A A G C T A G G T T T A C T C T T A G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A T A C T C 1 A A I A A T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E107 G T G C T A G G C G D T G A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G T G C T A G G C G D T G A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T 0 E108 G C G C T G G G C C I T A A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A T A C T C 1 A A I A A T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T T D A T A A C A G A T G G A G I A A C A C C C 2 A A I G G C A A T T A A C G T T C C I G A C G I I A T T G I C T C T T T T C G C G G G G G C A T D C 0 E109 G T G C T A G G C G D T A A A C A T G A G C T G A T C G G A C T C T T A G A A G G C C G A I A T C D G T A G C A A A T C G A G I A G C A C C C 1 A A I A G C A A T T A A C G T C C C D G A C A I I A T A C I C T C T C C A C C C A G G G G T A T D T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A T G A C A A A T G G A G I A A T A C T C 1 A A I A A T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E110 A T G C A A A G T G D T G A A C A T G G G C T G A T C G G A C T C G C A G C A T A C C G A I A T T D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T G A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C G C T G G G C C I T A A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E111 G T G C T A G G C G D T G A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D A G A A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T C D G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T 0 E112 G T G T T A G G C G D T A A A C A T G A G C T G A T C G G A C T C T T A G A A G G C C G A I A T C D G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A G A A C A A A T G G A G I G A C A C C C 1 A A I A G T A A T T A A C G C T C C I G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E113 G C T C T G G G C G D T G G A C G C A A G C T A G G T T T A C T C T T A G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T G A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T T D A T A A C A G A T G G A G I A A C A C C C 2 A A I G G C A A T T A A C G T T C C I G A C G I I A T T G I C T C T T T T C G C G G G G G C A T D C 0 E114 G C G C T G G G C C I T A A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A G A A C A A A T G G A G I G A C A C C C 1 A A I A G T A A T T A A C G C T C C I G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E115 G C T C T G G G C G D T G G A C G C A A G C T A G G T T T A C T C T T A G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A (T) A C T (C) 1 A (A) I A (A) T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T C D A T G A C A A A T G G A G I A A (C) A C T (T) 1 A (T) I A (G) T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E116 G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T T D A T A A C A G A T G G A G I A A C A C C C 2 A A I G G C A A T T A A C G T T C C I G A C G I I A T T G I C T C T T T T C G C G G G G G C A T D C 0 E117 G (T) (G) C T (A) G G C (G) D T G A A (T) A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I A G A A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G (C) (T) C T (G) G G C (C) D T G A A (C) A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T 0 E118 G T G C T A G G C G D T G A A T A T A [G] G C T G A T C G G A C T C G C A G C A T A C C G A I A T T D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T G A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A T G A C A A A T G G A G I A A T A C T C 1 A A I A A T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E119 A T G C A A A G T G D T G A A C A T G G G C T G A T C G G A C T C G C A G C A T A C C G A I A T T D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T G A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C G D T G G A C G C A A G C T A G G T T T A C T C T T A G C A T A C C G A I A T C I A G A A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E120 G C T C T G G G C C D T G A A C A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T C I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T 0 E121 G T G C T A G G C G D T G A A T A T A A G C T G A T C G G A C T C T T G G C A T A C C G A I A T C D A T G A C A A A T G G A G I A A C A C T T 1 A T I A G T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A G A A C A A A T G G A G I G A C A C C C 1 A A I A G T A A T T A A C G C T C C I G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E122 G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G [G] C C G A I (A) (C) C D A T G A C A A A T G G A G I A A T A C T C 1 A A I A A T A A T T A A C G C T C C D G G C G D I A T A C D C C C T C C A T C C A A G G A T A T I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I (C) (T) C D A G A A C A A A T G G A G I G A C A C C C 1 A A I A G T A A T T A A C G C T C C I G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T 0 E123 G C T C T G G G C C I T A A A C A T G A G C T G A T C G G A C T C T T A G C A T A A A G A D C T T I G T A A C A G A T G A A G I A A C A C C C 4 A A I A G C A G C G A A C G T C C C D G A C G I I A C A C D C C C G C C A T C T A G G G G T G C I T G C T C T G G G C C I T A A A C A T G A A C T G A T C G G A A T C T T A A A G G G C C G A I C T C D A G A A C A A A T G G A G I A A C A C C C 1 A A I A G T A A T T A A C G C T C C D G G T G D I A T A C D C C C T C C A T C C A A G G A T A T I T END BESTPAIRS1 Haplotype estimates for each individual, with uncertain phases enclosed in () and uncertain genotypes enclosed in [] with phase known positions indicated by = BEGIN BESTPAIRS2 0 DY01 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) (C) = = = = = = (C) (C) = = (I) (A) = = = = = = = = = A G C C = = = D = G = G A = ? ? ? ? D A = = = = = T A A = G = = C = I ? ? = G = = = = T = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) (T) = = = = = = (A) (A) = = (D) (C) = = = = = = = = = G A T G = = = I = A = A C = ? ? ? ? I G = = = = = G G G = C = = T = D ? ? = A = = = = A = = = = = = T = = = = = = = = = = = = = = = 0 DY02 (A) = = = = = (A) = (T) ? (D) = (G) = = = = = = (G) = = = = = = = (G) (G) (A) = (T) (C) (G) (C) ? ? = = (T) = = = (G) (A) = = = = I G = A ? ? ? = G = = A ? ? ? = = = = = C ? ? ? ? = = = C = G = G = = = = T C = T = ? ? = = ? ? G = = = = G = = G = = = = = = = G A T G = = = = = (G) = = = = = (G) = (C) ? (I) = (A) = = = = = = (A) = = = = = = = (T) (T) (T) = (C) (G) (T) (T) ? ? = = (G) = = = (C) (T) = = = = D A = G ? ? ? = A = = G ? ? ? = = = = = T ? ? ? ? = = = T = A = T = = = = C T = C = ? ? = = ? ? A = = = = C = = T = = = = = = = A G G A = = = = = 0 DY03 = T G = = A = = = = = = = A = = A = = A = = = ? ? ? ? ? ? = = = = T T G = = = = = = = = = = = = = ? ? ? ? ? ? ? = = C = G A = = = = = ? A = = 4 = = D = = = = A = = = G = C = = T = I A = = A = = = = = G I = T = T T T T C G = G = = G = = = = D C = C T = = G = = = = = = = G = = G = = G = = = ? ? ? ? ? ? = = = = G C A = = = = = = = = = = = = = ? ? ? ? ? ? ? = = T = A G = = = = = ? C = = 1 = = I = = = = G = = = A = G = = C = D G = = G = = = = = C D = C = G C C A T C = A = = T = = = = I T 0 DY04 = = (G) (T) (A) = = (G) = = = (C) (A) = (T) = = = = = = A T = = = = G G A = T C = = G = ? ? = = = = G A = A = = = = = A G T G = = ? = A G G = = = = = = = = = = = = = = = = G = G = = C = = C = T = = A = = I I = = = = = = = = = = = = = = = = = = = = = = = = = = = (T) (C) (T) = = (A) = = = (T) (G) = (A) = = = = = = C A = = = = T T T = C G = = A = ? ? = = = = C T = C = = = = = G A C A = = ? = G A A = = = = = = = = = = = = = = = = A = T = = T = = T = C = = G = = D D = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY05 = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = D A = = G = G = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = I G = = A = A = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY06 = = = = = = = (G) = = = = = = = = = = (G) = = = = = = = = (T) = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = = = C C G (G) = D = G = G A = = 4 = = D = = = = A = = G G = C = T T = I A = = A = = = = = G I = T = = T T T C G = G = = G = C = = D C = = = = = = = (A) = = = = = = = = = = (A) = = = = = = = = (G) = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = T G A (A) = I = A = A C = = 1 = = I = = = = G = = A A = G = C C = D G = = G = = = = = C D = C = = C C A T C = A = = T = T = = I T 0 DY07 = = (G) = = = = (G) = = = = = = = = = = = = = C = ? ? ? ? ? ? = = = = = = A = = = T = A A = = D = T = I G = A G T G = G = = A G = = = = = = = = ? ? ? ? = = = C = G = G = = = = T C = T = = A = = I = G = = = = G = = G = = = = = = = G A T G = ? ? ? = = = (T) = = = = (A) = = = = = = = = = = = = = A = ? ? ? ? ? ? = = = = = = G = = = G = C C = = I = C = D A = G A C A = A = = G A = = = = = = = = ? ? ? ? = = = T = A = T = = = = C T = C = = G = = D = A = = = = C = = T = = = = = = = A G G A = ? ? ? = 0 DY08 = = G = = = = G = = = = = = = = = = = = = C = = = = = = = = = = = = = ? ? = = ? = = = ? = = = = C ? ? = G G = = ? ? ? C G ? ? ? = G ? = = = ? ? ? ? = = = T = A = T = = = = C T = = = ? = = = D = ? = = = ? = = ? = = = = = = = = A = G ? = ? ? = = = = T = = = = A = = = = = = = = = = = = = A = = = = = = = = = = = = = ? ? = = ? = = = ? = = = = T ? ? = A A = = ? ? ? G A ? ? ? = A ? = = = ? ? ? ? = = = C = G = G = = = = T C = = = ? = = = I = ? = = = ? = = ? = = = = = = = = G = T ? = ? ? = = 0 DY09 = = G = = = = G = = = = = = = = = = = = = = T = = = = G G A = T C = = G = = = T = = = G A = A = ? I G = A = = = ? ? ? = A = = = = = = = = = = 4 = = = = = C = G C = = = = = = ? ? ? ? = A ? = I = = C = = = = = = = = = = = = T = = = G = = G C = = = = T = = = = A = = = = = = = = = = = = = = A = = = = T T T = C G = = A = = = G = = = C T = C = ? D A = G = = = ? ? ? = G = = = = = = = = = = 1 = = = = = T = A T = = = = = = ? ? ? ? = G ? = D = = T = = = = = = = = = = = = C = = = T = = A T = = 0 DY10 = T = = = A = A = = = = = A = = A T = = = = A G A T C G = T = C G = = = = = = G = = = C T = = = = (I) (G) = = = = = = (G) = = = = (A) = = = (C) = = (C) = = = = = = (G) (C) = = = = = = (T) = (T) = = = = = = = = = (D) = = = = = = = (T) = = = = = = = = = = = = = = = = = = C = = = G = G = = = = = G = = G C = = = = T A G G T T = A = T C = = = = = = T = = = G A = = = = (D) (A) = = = = = = (A) = = = = (G) = = = (T) = = (T) = = = = = = (A) (T) = = = = = = (C) = (C) = = = = = = = = = (I) = = = = = = = (C) = = = = = = = = = = = = = = = = = 0 DY11 = = G T A = = G = = = C A = T = = = ? = = A T = = = = G G A = T C = = G = = = T ? ? ? G A = A C T ? ? = A = = = G = = = A = = = = = ? = ? = = 4 = = = = = C = G C = = = = = = = = = = = A = = I ? = C = = = = = = = = = = = = T = = = G = = G C = = = = T C T = = A = = = T G = A = = = ? = = C A = = = = T T T = C G = = A = = = G ? ? ? C T = C T C ? ? = G = = = A = = = G = = = = = ? = ? = = 1 = = = = = T = A T = = = = = = = = = = = G = = D ? = T = = = = = = = = = = = = C = = = T = = A T = = 0 DY12 = = (G) = = = = (G) = = = = = = = = = = = = = (C) = = = = = = = = = = = = = = = = = (T) = = = = = = = (T) (C) D A = G A C A = A = = G A = = = = = = = T T = = T = = = T = A = T = = = = C T = C = = G = = D ? A = = = = C = = T = = = = = = = A G G A = = = = = = = (T) = = = = (A) = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = = = = (G) = = = = = = = (C) (T) I G = A G T G = G = = A G = = = = = = = C C = = A = = = C = G = G = = = = T C = T = = A = = I ? G = = = = G = = G = = = = = = = G A T G = = = = = 0 DY13 (A) = (G) = (A) = = (G) (T) = = = = = = = = = (G) = = (C) = = = = = = = = = = = ? = (A) = = = (T) = = (C) = = = = (T) = = = = = = = = = = C = = = = D = G = G A = (C) 4 = = D = = = = = = = G G = C = T T = I A = = = = = = = = G = = = = = = = = = = = = = = = = C = = = C (G) = (T) = (T) = = (A) (C) = = = = = = = = = (A) = = (A) = = = = = = = = = = = ? = (G) = = = (G) = = (A) = = = = (C) = = = = = = = = = = T = = = = I = A = A C = (T) 1 = = I = = = = = = = A A = G = C C = D G = = = = = = = = C = = = = = = = = = = = = = = = = T = = = T 0 DY14 = T G = = A = = = G D = G = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = A = C I G = = G T G A G = = A G = = = = = = = = = 1 G = = A = = = G = G = = = = = C = T D = = = = = = G = A C D G C = G C C A T C = A = A T = T = = I T = C T = = G = = = C I = A = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = C = T D A = = A C A G A = = G A = = = = = = = = = 2 A = = G = = = A = T = = = = = T = C I = = = = = = A = T G I C T = T T T T C G = G = G G = C = = D C 0 DY15 = = = C T = = = = = = T G = A = = = = = = A = = = = = = = = = = = = = = = = = G = = = = = = = = T D A = = = = = A G = = = = = = = = = = = = = 1 = = = = = = = = T = = = = = = = = = ? = = ? = = = = T = = = = = = T = = = = = C = = = T = = ? ? = = = = = T A = = = = = = C A = T = = = = = = C = = = = = = = = = = = = = = = = = T = = = = = = = = C I G = = = = = G A = = = = = = = = = = = = = 4 = = = = = = = = C = = = = = = = = = ? = = ? = = = = C = = = = = = G = = = = = T = = = G = = ? ? = = 0 DY16 = = = = = = = = = G D = G G = = G = A G G = = = = = = = = = C = = G C = G C A T A = = = = = A = = D = = = A C A = = C C G A = D = G = G A = ? ? ? ? D = = = = A = = G G = C = ? ? ? ? A = = A = = A = T G I C T = = = = = = = = = = G G = = = = = = = = = = = = = = = C I = A A = = A = G A A = = = = = = = = = A = = T T = A A G G G = = = = = C = = I = = = G T G = = T G A G = I = A = A C = ? ? ? ? I = = = = G = = A A = G = ? ? ? ? G = = G = = G = A C D G C = = = = = = = = = = A T = = = = = = 0 DY17 = = = C T = = = = = = T G = A = = = = = = A = = = = = = = = = = = = = = = ? ? G = = = = = = = C ? D A = G = = = A = = = G ? ? ? = = = = = = = 1 = = = = = T = A T T = = = = C T = = = = G = = D = = T = = = = = = T = = = = = C = A = = A = A T ? = = = = T A = = = = = = C A = T = = = = = = C = = = = = = = = = = = = = = = ? ? T = = = = = = = T ? I G = A = = = G = = = A ? ? ? = = = = = = = 4 = = = = = C = G C G = = = = T C = = = = A = = I = = C = = = = = = G = = = = = T = G = = G = G C ? = 0 DY18 = T = = = A = A = = = = = A = = A = = A = = A = = = = T T T = C G T T = = = = G = = = C T = C = = I = = G = = = = = T ? ? = A I = A = A C = = 1 A = I = = = = = = T A A T G = ? ? ? ? ? ? = G D D = = A C D ? ? T T = = = = = = = A = = A = ? ? = = = C = = = G = G = = = = = G = = G = = G = = T = = = = G G A = T C G C = = = = T = = = G A = A = = D = = A = = = = = C ? ? = G D = G = G A = = 4 G = D = = = = = = G G G C C = ? ? ? ? ? ? = A I I = = T G I ? ? C G = = = = = = = G = = G = ? ? = = 0 DY19 (A) = = = (A) ? (A) = (T) = = = = = = = = = (G) = = = = = = T C G G = = = = = = G = = = = = = = = = = A = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (G) = = = (T) ? (G) = (C) = = = = = = = = = (A) = = = = = = G T T T = = = = = = A = = = = = = = = = = C = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY20 A = = = A = A = T = = = = = = = = = G G = = = = = = = = = = = = = G C = = = = = = C C ? = I = = = ? = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = T = G = C = = = = = = = = = A A = = = = = = = = = = = = = T T = = = = = = A A ? = D = = = ? = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 DY21 = = G = = = = G = = = = = = = = = = = = = = T = = G T T = A = T C = = = = = = T = = = G A = = = T I G = A A = A G A = = A = G = = = = = = = = 4 A = = = = = = G C G = = C = = C = = = = A = = I I = C = = = = = C G = = = = = T = G = = G = G C = = = = T = = = = A = = = = = = = = = = = = = = A = = T C G = T = C G = = = = = = G = = = C T = = = C D A = G G = G A G = = G = A = = = = = = = = 1 G = = = = = = A T T = = T = = T = = = = G = = D D = T = = = = = T T = = = = = C = A = = A = A T = = 0 DY22 = = = C T = = = = = = T G = A = ? ? = = = = = = = = = = = = = = = = = = = ? ? G ? ? ? = = = = T = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = C = G = G = = = = T C = = = = A C = I = = = = = = = = = = = = = = = = = G ? ? G ? = = = = = = = T A = = = = = = C A = T = ? ? = = = = = = = = = = = = = = = = = = = ? ? T ? ? ? = = = = C = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = T = A = T = = = = C T = = = = G T = D = = = = = = = = = = = = = = = = = A ? ? A ? = = = = 0 DY23 = T = = = A = = T = = = = A = = A T G G = = = G A T C G G ? ? = = G C = = = = = = = = = = = = = C (I) G G = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = ? = = = = ? = = = = = = G = ? = = = = = = = = = = = = = = = C = = = G = = C = = = = G = = G C A A = = = A G G T T T ? ? = = T T = = = = = = = = = = = = = T (D) A T = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = ? = = = = ? = = = = = = T = ? = = = = = = = = = = = = = = 0 DY24 = T = = = A = A = = = = = A = = A = = A = A = = = = = = = = = = = T T G = = = G = = = = = = = C = = A T G G = G ? ? ? = G A A = = = = = = = = = G = = = = = = A = T = = T = = ? ? ? ? = G = = D D = = = = ? = = ? ? = = = = = = = A = G A = = = = = = C = = = G = G = = = = = G = = G = = G = C = = = = = = = = = = = G C A = = = T = = = = = = = T = = G G A A = A ? ? ? = A G G = = = = = = = = = A = = = = = = G = G = = C = = ? ? ? ? = A = = I I = = = = ? = = ? ? = = = = = = = G = T G = = = = = 0 E101 = T G T = A = = = G D = = = = = = = = = G = = = = = = = = = C = = = = = G = A = = = = = = = A = = = = = = = = = = = = ? ? = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C T C = G = = = C I = = = = = = = = = A = = = = = = = = = A = = = = = A = G = = = = = = = C = = = = = = = = = = = = ? ? = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E102 = T G = = A = = = = = = = = = (T) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (D) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C T = = G = = = = = = = = = (C) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = (I) = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E103 = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = C = = = = = G C A T A A A = = D = = = = G = A = = = G = = = A = = = = = C = = C = 4 = = = = G C = G C G = = = = T C = = = = A = = I ? = ? = = = = ? = G = = = = = T = G = = G = G C = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = A = = = = = A A G G G C C = = I = = = = A = G = = = A = = = G = = = = = T = = T = 1 = = = = A T = A T T = = = = C T = = = = G = = D ? = ? = = = = ? = T = = = = = C = A = = A = A T = = 0 E104 = = G = = = = = = = = = = = = T = = A = = = = = = = = = = = = = = = = G = = = = ? ? ? = = I A = C = = = G = = = A = = = = = = = = = = = = T T 1 = T = A = T = = = = = = = = C = = = D = G = = D ? = = A C D = C = = C C A T C = A A = = A T = = I T = = T = = = = = = = = = = = = C = = G = = = = = = = = = = = = = = = = A = = = = ? ? ? = = D C = T = = = A = = = G = = = = = = = = = = = = C C 2 = A = G = C = = = = = = = = T = = = I = A = = I ? = = T G I = T = = T T T C G = G G = = G C = = D C 0 E105 = T G = = A = = = G D = G = = T = = A = = = = = = = = = = = = = = = = = = ? ? = ? ? ? = = = = = = = = = = = = = = = ? = = = = = (G) = = = = = = = = = = = = = (A) = = = = = = = = = = = = = = (T) = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = C T = = G = = = C I = A = = C = = G = = = = = = = = = = = = = = = = = = ? ? = ? ? ? = = = = = = = = = = = = = = = ? = = = = = (A) = = = = = = = = = = = = = (G) = = = = = = = = = = = = = = (C) = = = = = = = = = = = = = ? = = = = = = = = = = = = = = 0 E106 = T G = = A = = = = = = = A = T A T = = = = = G A T C ? G = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C = = = T = = T = = G = = = = = = = = = = = = = = = = = = = = = = = = ? = = = ? = = = = = = = = = = = = = = = = = C T = = G = = = = = = = G = C G C = = = = = A G G T ? T = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T = = = C = = A = = A = = = = = = = = = = = = = = = = = = = = = = = = ? = = = ? = = = = = = = = = = = = = = = = 0 E107 = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = D A = G = = = A = = = G = = = = = = = = T T 1 = T = = = T = A T T = = = = C T = = = = G = = D = ? T = = = = = = T = = = = = C = A = = A = ? ? = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = I G = A = = = G = = = A = = = = = = = = C C 4 = A = = = C = G C G = = = = T C = = = = A = = I = ? C = = = = = = G = = = = = T = G = = G = ? ? = = 0 E108 = = G = = = = = = = = = = = = T = = ? = = = = = = = = = = = = = = = = G = = = = = C C = = I A = C = = = G = = = A = = = = = = = = = T = = T ? ? ? = ? ? ? ? ? = = = = = ? ? ? ? ? ? ? ? ? = = D = = = A C D ? ? ? ? ? ? A T C = A A = = A T ? ? I T = = T = = = = = = = = = = = = C = = ? = = = = = = = = = = = = = = = = A = = = = = A A = = D C = T = = = A = = = G = = = = = = = = = C = = C ? ? ? = ? ? ? ? ? = = = = = ? ? ? ? ? ? ? ? ? = = I = = = T G I ? ? ? ? ? ? T C G = G G = = G C ? ? D C 0 E109 = T G = = A = = = G D = = = = = = = ? = G = = = = = = = = = C = = = = = G = A = ? ? ? = = = A = ? = G = A G = = = = = C = = = = = G C = = C = = = = = = G C = ? = = = = = = T C = = = ? ? = A I = ? = = = I = T = = = = = C = = = G = = G = = = D = = C T = = G = = = C I = = = = = = = ? = A = = = = = = = = = A = = = = = A = G = ? ? ? = = = C = ? = A = G A = = = = = G = = = = = A T = = T = = = = = = A T = ? = = = = = = C T = = = ? ? = G D = ? = = = D = C = = = = = T = = = A = = A = = = I = 0 E110 A T = = A A A = T G D = G = = C = = G G = = = = = = = = = = = = = G C A = = = ? = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = G C = = T G G = C C I = A = = T = = A A = = = = = = = = = = = = = T T G = = = ? = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E111 = T G = = A = = = G D = G = = T = = A = = = = = = = = = = = = = = = = G = = = = = C C = = I A = = = A G = = = = A = = = G = = = = = = = = = = 1 = = = = = T = A T T = = = = C T = = = = G T = D ? = T = = = = = = T = = = = = C = A = = A ? A T = = = C T = = G = = = C I = A = = C = = G = = = = = = = = = = = = = = = = A = = = = = A A = = D C = = = G T = = = = G = = = A = = = = = = = = = = 4 = = = = = C = G C G = = = = T C = = = = A C = I ? = C = = = = = = G = = = = = T = G = = G ? G C = = 0 E112 = T G T = A = = = G D = = = = = = = = = G = = = = = = = = = C = = ? = = G = A = = = = = = = A = = = G T = = = = G = ? = A = = = A = = = = = = 4 = = = = = C = G C G = = = = T C = = D = A C = I ? = C = = = = = = G = = = = = T = G = = G = G C = = = C T C = G = = = C I = = = = = = = = = A = = = = = = = = = A = = ? = = A = G = = = = = = = C = = = A G = = = = A = ? = G = = = G = = = = = = 1 = = = = = T = A T T = = = = C T = = I = G T = D ? = T = = = = = = T = = = = = C = A = = A = A T = = 0 E113 = = = = = = = = = G D = G G = = G C A = = = = A G G T T T = = = = = = = = = = = = C C = = I A = C = = = G = = = A = = = = = = = = = = = = T T 1 = T = A = T G = = = = = = = C ? ? ? ? = G = = D ? = = A C D = C = = C C A T C = A A = = A T = = I T = = = = = = = = = C I = A A = = A T G = = = = G A T C G G = = = = = = = = = = = = A A = = D C = T = = = A = = = G = = = = = = = = = = = = C C 2 = A = G = C A = = = = = = = T ? ? ? ? = A = = I ? = = T G I = T = = T T T C G = G G = = G C = = D C 0 E114 = = G = = = = = = = = = = = = T = = ? = G = = = = = = = = = C = = = = G G C A T A = = = = = A = = I G T = = = = G = = = A ? ? ? A = = = = = = 4 = = = = = C = G C G = = = = T C = = D = A C = I = = C = = = = = = G = = = = = T = G = = G = G C ? = = = T = = = = = = = = = = = = C = = ? = A = = = = = = = = = A = = = = A A A G G G = = = = = C = = D A G = = = = A = = = G ? ? ? G = = = = = = 1 = = = = = T = A T T = = = = C T = = I = G T = D = = T = = = = = = T = = = = = C = A = = A = A T ? = 0 E115 = = = = = = = = = G D = G G = = G C A = = = = A G G T T T = = = = = = = = = = = = C C = = I A = = = = = = = = = = = = = = = = = = = (T) = = = (C) = = (A) = = (A) = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = ? ? = = = = = = = = = = = C I = A A = = A T G = = = = G A T C G G = = = = = = = = = = = = A A = = D C = = = = = = = = = = = = = = = = = = = (C) = = = (T) = = (T) = = (G) = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = ? ? = = 0 E116 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C I G = = = = = = = = = A = = = = = = = = = = 4 = = = A = = = G C G = = = = = C = = D = = = = = = = C A C D = C ? ? C C A T C T A = = = = T G C I T = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = T D A = = = = = = = = = G = = = = = = = = = = 2 = = = G = = = A T T = = = = = T = = I = = = = = = = T T G I = T ? ? T T T C G C G = = = = C A T D C 0 E117 = (T) (G) = = (A) = = = (G) = = = = = (T) = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = A G = = = = A = = = G = = = = = = = = = = 1 = = = = = T = A T T = = = = C T = = ? = G = = D = = T = = = = = = T = ? = = = C = A = = A = A T = = = (C) (T) = = (G) = = = (C) = = = = = (C) = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = G T = = = = G = = = A = = = = = = = = = = 4 = = = = = C = G C G = = = = T C = = ? = A = = I = = C = = = = = = G = ? = = = T = G = = G = G C = = 0 E118 = T G = = A = = ? ? D = G = = T = = A ? ? ? = = = = = = = = C = = ? C = G C A T A = = = = = A = T = = = = = = = = = ? = = = = = = = C = = = T = = T = = G = G = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = C T = = G = = ? ? I = A = = C = = G ? ? ? = = = = = = = = A = = ? T = A A G G G = = = = = C = C = = = = = = = = = ? = = = = = = = T = = = C = = A = = A = A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E119 A T G = A A A = T = = = = A = = A T G G = = = G A T C G G = = = = G C = = = = = = = = = = = = = T D = T G = = = = = = = = = = = = = = = = T T = = T = = = = G = = = = = = = = = = = = = = C = = = = = = = = = = = = = = = = = = = = = = = = = = = = G C T = T G G = C = = = = G = = G C A A = = = A G G T T T = = = = T T = = = = = = = = = = = = = C I = G A = = = = = = = = = = = = = = = = C C = = A = = = = A = = = = = = = = = = = = = = T = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E120 = = = = = = = = = = D = G = = = = = A = = = = = = = = = = = = = = = = G = = = = = C C = = I A = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = I = A = = = = = G = = = = = = = = = = = = = = = = A = = = = = A A = = D C = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0 E121 = T G = = A = = = G D = G = = T = = A = G = = = = = = = = = C = = = = G G C A T A = = = = = A = = = = T G = = = = = = = = = = = A = = = = T T = = T = = = = = = = ? ? ? = = = ? ? ? ? = = ? ? ? ? = ? = = = = = = = = ? = = = = = = = = = = = = = = = C T = = G = = = C I = A = = C = = G = A = = = = = = = = = A = = = = A A A G G G = = = = = C = = = = G A = = = = = = = = = = = G = = = = C C = = A = = = = = = = ? ? ? = = = ? ? ? ? = = ? ? ? ? = ? = = = = = = = = ? = = = = = = = = = = = = = = 0 E122 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = (A) (C) = = = T G = = = = = = = = = = = A = T = = T = = = = = = A = = = = = = = = = = = = = D = = C = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = (C) (T) = = = G A = = = = = = = = = = = G = C = = C = = = = = = G = = = = = = = = = = = = = I = = T = = = = = = = = = = = = = ? = = = = = = = = = = = = = = 0 E123 = = = = = = = = = = = = = = = = = = = = G = = = = = = = = = C = = = = = G C A T A A A = = D = = T I G T = = = = G = ? = A = = = = = = = = = = 4 = = = = = C = G C G = = = = T C = = = = A ? = I = = C = = = = ? = G = ? = = = T = G = = G = G ? = = = = = = = = = = = = = = = = = = = = = = A = = = = = = = = = A = = = = = A A G G G C C = = I = = C D A G = = = = A = ? = G = = = = = = = = = = 1 = = = = = T = A T T = = = = C T = = = = G ? = D = = T = = = = ? = T = ? = = = C = A = = A = A ? = = END BESTPAIRS2 Phase probabilities at each site with phase known positions indicated by = and missing data positions indicated by ? BEGIN PHASEPROBS = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.63 0.63 = = = = = = 0.63 0.63 = = 0.63 0.63 = = = = = = = = = 1.00 1.00 1.00 1.00 = = = 1.00 = 1.00 = 1.00 1.00 = ? ? ? ? 1.00 1.00 = = = = = 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 ? ? = 1.00 = = = = 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = 0.64 = = = = = 0.64 = 0.64 ? 0.64 = 0.64 = = = = = = 0.64 = = = = = = = 0.64 0.64 0.64 = 0.64 0.64 0.64 0.64 ? ? = = 0.64 = = = 0.64 0.64 = = = = 1.00 1.00 = 1.00 ? ? ? = 1.00 = = 1.00 ? ? ? = = = = = 1.00 ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 = ? ? = = ? ? 1.00 = = = = 1.00 = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 = = = = = = 1.00 1.00 = = 1.00 = = = = = = = 1.00 = = 1.00 = = 1.00 = = = ? ? ? ? ? ? = = = = 1.00 1.00 1.00 = = = = = = = = = = = = = ? ? ? ? ? ? ? = = 1.00 = 1.00 1.00 = = = = = ? 1.00 = = 1.00 = = 1.00 = = = = 1.00 = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = 1.00 = = = = = 1.00 1.00 = 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = = = = 1.00 1.00 = = 0.76 0.76 0.76 = = 0.76 = = = 0.76 0.76 = 0.76 = = = = = = 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = ? ? = = = = 1.00 1.00 = 1.00 = = = = = 1.00 1.00 1.00 1.00 = = ? = 1.00 1.00 1.00 = = = = = = = = = = = = = = = = 1.00 = 1.00 = = 1.00 = = 1.00 = 1.00 = = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.50 = = = = = = = = = = 0.50 = = = = = = = = 0.53 = 0.50 = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 0.55 = 1.00 = 1.00 = 1.00 1.00 = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = 1.00 = = = = = 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 = 1.00 = = 1.00 1.00 = = 0.66 = = = = 0.66 = = = = = = = = = = = = = 1.00 = ? ? ? ? ? ? = = = = = = 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = = = = = = = = ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = 1.00 = = = = 1.00 = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 = ? ? ? = = = 1.00 = = = = 1.00 = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = ? ? = = ? = = = ? = = = = 1.00 ? ? = 1.00 1.00 = = ? ? ? 1.00 1.00 ? ? ? = 1.00 ? = = = ? ? ? ? = = = 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 = = = ? = = = 1.00 = ? = = = ? = = ? = = = = = = = = 1.00 = 1.00 ? = ? ? = = = = 0.99 = = = = 0.99 = = = = = = = = = = = = = = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = = = 1.00 = = = 1.00 1.00 = 1.00 = ? 1.00 1.00 = 1.00 = = = ? ? ? = 1.00 = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 = = = = = = ? ? ? ? = 1.00 ? = 1.00 = = 1.00 = = = = = = = = = = = = 1.00 = = = 1.00 = = 1.00 1.00 = = = 1.00 = = = 1.00 = 1.00 = = = = = 1.00 = = 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = = = = = 1.00 = = = 1.00 1.00 = = = = 0.52 0.52 = = = = = = 0.52 = = = = 0.52 = = = 0.52 = = 0.52 = = = = = = 0.52 0.52 = = = = = = 0.52 = 0.52 = = = = = = = = = 0.52 = = = = = = = 0.52 = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 = = = ? = = 1.00 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 = = = 1.00 ? ? ? 1.00 1.00 = 1.00 1.00 1.00 ? ? = 1.00 = = = 1.00 = = = 1.00 = = = = = ? = ? = = 1.00 = = = = = 1.00 = 1.00 1.00 = = = = = = = = = = = 1.00 = = 1.00 ? = 1.00 = = = = = = = = = = = = 1.00 = = = 1.00 = = 1.00 1.00 = = = = 0.65 = = = = 0.65 = = = = = = = = = = = = = 0.74 = = = = = = = = = = = = = = = = = 0.74 = = = = = = = 0.68 0.61 1.00 1.00 = 1.00 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 = = = = = = = 1.00 1.00 = = 1.00 = = = 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 ? 1.00 = = = = 1.00 = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 = = = = = 0.54 = 0.54 = 0.54 = = 0.54 0.54 = = = = = = = = = 0.54 = = 0.54 = = = = = = = = = = = ? = 0.54 = = = 0.54 = = 0.50 = = = = 0.54 = = = = = = = = = = 1.00 = = = = 1.00 = 1.00 = 1.00 1.00 = 0.61 1.00 = = 1.00 = = = = = = = 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 1.00 = = = = = = = = 1.00 = = = = = = = = = = = = = = = = 0.97 = = = 0.97 = 1.00 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 1.00 = = 1.00 1.00 = = = = = = = = = 1.00 1.00 = = 1.00 = = = 1.00 = 1.00 = = = = = 1.00 = 1.00 1.00 = = = = = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = 1.00 = = 1.00 1.00 = = = 0.95 0.95 = = = = = = 0.95 0.95 = 0.95 = = = = = = 1.00 = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 1.00 1.00 = = = = = 1.00 1.00 = = = = = = = = = = = = = 1.00 = = = = = = = = 1.00 = = = = = = = = = ? = = ? = = = = 1.00 = = = = = = 1.00 = = = = = 1.00 = = = 1.00 = = ? ? = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 = 1.00 1.00 1.00 = = = = = = = = = 1.00 = = 1.00 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 = = 1.00 = = = 1.00 1.00 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 = ? ? ? ? 1.00 = = = = 1.00 = = 1.00 1.00 = 1.00 = ? ? ? ? 1.00 = = 1.00 = = 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = 1.00 1.00 = = = = = = = = = 1.00 1.00 = = = = = = 1.00 1.00 = 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = ? ? 1.00 = = = = = = = 1.00 ? 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 ? ? ? = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = 1.00 = = 1.00 = = 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 ? = = 1.00 = = = 1.00 = 1.00 = = = = = 1.00 = = 1.00 = = 1.00 = = 1.00 = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 1.00 = = = = 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = = = = = 1.00 ? ? = 1.00 1.00 = 1.00 = 1.00 1.00 = = 1.00 1.00 = 1.00 = = = = = = 1.00 1.00 1.00 1.00 1.00 = ? ? ? ? ? ? = 1.00 1.00 1.00 = = 1.00 1.00 1.00 ? ? 1.00 1.00 = = = = = = = 1.00 = = 1.00 = ? ? = = 0.87 = = = 0.87 ? 0.87 = 0.87 = = = = = = = = = 0.87 = = = = = = 1.00 1.00 1.00 1.00 = = = = = = 1.00 = = = = = = = = = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 = 1.00 = = = = = = = = = 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 = = = = = = 1.00 1.00 ? = 1.00 = = = ? = = = = = = = = = = = = = = = = = = = = = = 0.97 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = 1.00 = = = = = = = = = = = = = = 1.00 = = 1.00 1.00 1.00 = 1.00 = 1.00 1.00 = = = = = = 1.00 = = = 1.00 1.00 = = = 1.00 1.00 1.00 = 1.00 1.00 = 1.00 1.00 1.00 = = 1.00 = 1.00 = = = = = = = = 1.00 1.00 = = = = = = 1.00 1.00 1.00 = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 1.00 = 1.00 = = = = = 1.00 1.00 = = = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = = = 1.00 1.00 = = = = = = 1.00 1.00 = 1.00 = ? ? = = = = = = = = = = = = = = = = = = = ? ? 1.00 ? ? ? = = = = 1.00 = = = = = = = = ? ? ? = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 = 1.00 = = = = = = = = = = = = = = = = = 1.00 ? ? 1.00 ? = = = = = 1.00 = = = 1.00 = = 1.00 = = = = 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 ? ? = = 1.00 1.00 = = = = = = = = = = = = = 1.00 0.87 1.00 1.00 = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? ? = = ? = = = = ? = = = = = = 1.00 = ? = = = = = = = = = = = = = = = 1.00 = = = 1.00 = 1.00 = = = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = = = = = = = = = = 1.00 1.00 1.00 = = = 1.00 = = = = = = = 1.00 = = 1.00 1.00 1.00 1.00 = 1.00 ? ? ? = 1.00 1.00 1.00 = = = = = = = = = 1.00 = = = = = = 1.00 = 1.00 = = 1.00 = = ? ? ? ? = 1.00 = = 1.00 1.00 = = = = ? = = ? ? = = = = = = = 1.00 = 1.00 1.00 = = = = = = 1.00 1.00 1.00 = 1.00 = = = 1.00 1.00 = = = = = = = = = 1.00 = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 = = = = = = = 1.00 = = = = = = = = = = = = ? ? = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = = = = = = = = = 0.59 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.56 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.95 = = = = = = = = = 0.95 = = = = = 0.95 0.95 0.95 0.95 0.95 0.95 0.95 = = 0.95 = = = = 1.00 = 1.00 = = = 1.00 = = = 1.00 = = = = = 1.00 = = 1.00 = 1.00 = = = = 1.00 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = 1.00 = = 1.00 ? = ? = = = = ? = 1.00 = = = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = = 1.00 = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = ? ? ? = = 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 = = = = = = = = 1.00 = = = 1.00 = 1.00 = = 1.00 ? = = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 1.00 = 1.00 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = = = ? ? = ? ? ? = = = = = = = = = = = = = = = ? = = = = = 0.51 = = = = = = = = = = = = = 0.51 = = = = = = = = = = = = = = 0.51 = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = = = = = = = 1.00 = 1.00 1.00 1.00 = = = = = 1.00 1.00 1.00 1.00 ? 1.00 = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.90 = = = 0.90 = = 0.90 = = 0.90 = = = = = = = = = = = = = = = = = = = = = = = = ? = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 = = = = = = = = 1.00 1.00 1.00 = 1.00 = = = 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = 1.00 = = 1.00 = ? 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 = = 1.00 = ? ? = = = = 1.00 = = = = = = = = = = = = 1.00 = = ? = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 = = 1.00 1.00 = 1.00 = = = 1.00 = = = 1.00 = = = = = = = = = 1.00 = = 1.00 ? ? ? = ? ? ? ? ? = = = = = ? ? ? ? ? ? ? ? ? = = 1.00 = = = 1.00 1.00 1.00 ? ? ? ? ? ? 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 ? ? 1.00 1.00 = 1.00 1.00 = = 1.00 = = = 1.00 1.00 = = = = = = = ? = 1.00 = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 = ? ? ? = = = 1.00 = ? = 1.00 = 1.00 1.00 = = = = = 1.00 = = = = = 1.00 1.00 = = 1.00 = = = = = = 1.00 1.00 = ? = = = = = = 1.00 1.00 = = = ? ? = 1.00 1.00 = ? = = = 1.00 = 1.00 = = = = = 1.00 = = = 1.00 = = 1.00 = = = 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = 1.00 = = 1.00 1.00 = = = = = = = = = = = = = 1.00 1.00 1.00 = = = ? = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.99 0.99 = = 0.99 = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 = = 1.00 1.00 = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = 1.00 1.00 = 1.00 ? = 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 = = 1.00 ? 1.00 1.00 = = = 0.91 0.91 0.90 = 0.91 = = = 0.91 0.91 = = = = = = = = = 0.91 = = = = = = = = = 0.91 = = ? = = 0.91 = 0.91 = = = = = = = 0.91 = = = 1.00 1.00 = = = = 1.00 = ? = 1.00 = = = 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 ? = 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = = 1.00 1.00 = 0.93 = = = 1.00 = = = 1.00 = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 = 1.00 = 1.00 1.00 = = = = = = = 1.00 ? ? ? ? = 1.00 = = 1.00 ? = = 1.00 1.00 1.00 = 1.00 = = 1.00 1.00 1.00 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 = = 1.00 1.00 = = 1.00 = = = = = = = = = = = = 1.00 = = ? = 1.00 = = = = = = = = = 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 = = 1.00 1.00 1.00 = = = = 1.00 = = = 1.00 ? ? ? 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = 1.00 = 1.00 1.00 = 1.00 = = 1.00 = = = = = = 1.00 = = = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 ? = = = = = = = = = = 1.00 1.00 = 1.00 1.00 = = 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = = = = = = = = 1.00 1.00 = = 1.00 0.95 = = = = = = = = = = = = = = = = = = = 0.81 = = = 0.81 = = 0.81 = = 0.81 = = = = = = = = = = = = = = = = = = = = = = = = = = ? = = = = = = = = = = = = = = ? ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 0.97 1.00 1.00 = = = = = = = = = 1.00 = = = = = = = = = = 1.00 = = = 1.00 = = = 1.00 1.00 1.00 = = = = = 1.00 = = 1.00 = = = = = = = 1.00 1.00 1.00 1.00 = 1.00 ? ? 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 = 0.80 0.80 = = 0.80 = = = 0.81 = = = = = 0.78 = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = = = 1.00 = = = 1.00 = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = ? = 1.00 = = 1.00 = = 1.00 = = = = = = 1.00 = ? = = = 1.00 = 1.00 = = 1.00 = 1.00 1.00 = = = 0.94 0.94 = = 0.94 = = ? ? 0.94 = 0.94 = = 0.94 = = 0.94 ? ? ? = = = = = = = = 1.00 = = ? 1.00 = 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 = 1.00 = = = = = = = = = ? = = = = = = = 1.00 = = = 1.00 = = 1.00 = = 1.00 = 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 1.00 = 1.00 1.00 1.00 = 1.00 = = = = 1.00 = = 1.00 1.00 1.00 1.00 = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = = = = = = = = = = 0.94 0.94 = 0.94 0.94 = = = = = = = = = = = = = = = = 0.94 0.94 = = 0.94 = = = = 0.94 = = = = = = = = = = = = = = 0.94 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = 1.00 = = = = = 1.00 = = = = = = = = = = = = = = = = 1.00 = = = = = 1.00 1.00 = = 1.00 1.00 = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 1.00 = = 1.00 = = = 1.00 1.00 = 1.00 = = 1.00 = = 1.00 = 1.00 = = = = = = = = = 1.00 = = = = 1.00 1.00 1.00 1.00 1.00 1.00 = = = = = 1.00 = = = = 1.00 1.00 = = = = = = = = = = = 1.00 = = = = 1.00 1.00 = = 1.00 = = = = = = = ? ? ? = = = ? ? ? ? = = ? ? ? ? = ? = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = ? ? ? = = = 0.69 0.69 = = = 1.00 1.00 = = = = = = = = = = = 1.00 = 1.00 = = 1.00 = = = = = = 1.00 = = = = = = = = = = = = = 1.00 = = 1.00 = = = = = = = = = = = = = ? = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = = 1.00 = = = = = = = = = 1.00 = = = = = 1.00 1.00 1.00 1.00 1.00 1.00 1.00 = = 1.00 = = 1.00 1.00 1.00 1.00 = = = = 1.00 = ? = 1.00 = = = = = = = = = = 1.00 = = = = = 1.00 = 1.00 1.00 1.00 = = = = 1.00 1.00 = = = = 1.00 ? = 1.00 = = 1.00 = = = = ? = 1.00 = ? = = = 1.00 = 1.00 = = 1.00 = 1.00 ? = = END PHASEPROBS