HMGB1 Color FASTA
The longest form of insertion/deletion sites is shown in the FASTA sequence and contain a '-' as the alternate allele in the variation tag.
*Display courtesy of
GeneSNPs
TCCTGGAAAA TATTGATAGT GCCATATTCA ACTAATCGTC AAATTTTAAT
50
ATCATCGATG CCACTGAAAG TATCTTAATC ATTCTCATGA ATATTTTGTA
100
ATATGAGACA TTGAGAAGAT AAGACAGTAT TGAAATAAAT ATCTAGATTT
150
AAAAAATATA AAATTTGAAT GATTAGTAGA GGGAAGCAGA GGATAGTAAA
200
TATGTGTGAA AATAATAACA TAAAAGTTAA CTTTAGATAT ATTATCTTTA
250
AACACTGCAT GTGCAGTATA CCAATTTATA TCCTCTTTAA TATTATAGTC
300
TTTTTCATGT GCATGTGTGA TATATTGTCC ATTCACCAAG ACTATAATCC
350
CTGAGTCC
G
A TAGTGTATTT TCTTTTAAAA AGAAATCAAC ATTAAAACAG
400 |
var(359):[A:0.39]
GAAAGATTAT CTAAGCTTAC TCTCAA
G
TAG TTTAATACAT TTGAGGAAAT
450 |
var(427):[C:0.01]
AAATTAGGTT ATGGATGCTT ATAAGCGATA TAAAAAATCA AATTAACACG
500
ATGTAGGTGA TTTATTCCAA ATTTGATCTG TTACATTTGG AGGAATTGGT
550
TGTTGGATTT AGAAGTGTAC AAAATACCAT TAGAGAGTGA AAAAAA
A
GGG
600 |
var(597):[:0.01]
AAGTCTGTTA TAACTGAATA GGGGCGTGGT CTGCTCAGGC TAAAAGGAAT
650
AGATAGTAGT TTCATAAAGG ACTG
A
TATAA CTGTAGAGTC TTCAGAACTG
700 |
var(675):[C:0.15]
GCCACTACAG CCAGCACATT TTCTCTACAG ACGTAAGTAT GTCTATTAAT
750
ACCAGCCAGC TTGGTGAGTT AGAGAAACCA CAGCCTGTGG ATTTGGGCAC
800
ATGCACTCTC TGCCTGCATC TAATCCTTCG GGTAACCATA TACCTACAAC
850
TCCTGTAATC CTAGAGCAGT TACATGGATG CACTAAGTGG TGTGATGGGA
900
GGGAAAGATA GCATCACAAG GATTCGTTTG ATTGTAACAG TAATCCACAC
950
CAAGTCAAAT AAAATAGCCA AACAGTTTAG AATGTGGTCT CTAATGAATT
1000
TGCTAATTCT
A
CCAGGGCCT CACAAACATT TCCTGCTAGA GTACCCCATA
1050 |
var(1011):[G:0.16]
TCAAACCAAG TGGCTGTTCT TTAATTACAT GGAATAATTA TTTGATTTCC
1100
AGGAAGTTAA GACAGTGCTT TGTATTTAAA TAAAAAGTTC TAGACATGCT
1150
GTGAAACTCG ATCAAACCAA GAAAAAGGGT GAAACTGAAT GCCTGCTCAC
1200
TGACTCAAGA TTTCAGCTGC TCAGCGAGCC TGACGTGACG GCTTATGAGC
1250
CCAGAAAAGG GGTATTTTAA ACCCGGCTGG CTGGATCATG TCACTTTCTT
1300
ATAGAAGCCC TGCCTTTCCA GAGACCTAAA GTGTAACGCA ATCAGAGACC
1350
TTTGAGGGGC TCGAGGCTCG GCGGCTTCCG CCCCTCAGCA CCAGCAGAGA
1400
CCCCAGTTTT CAGGGGACAT GATCCCATAG TGTCGCCCTC ACTTTTGAAG
1450
GGCCATTAAA AGCCTGGGGC C
T
CTTATCTC AACGGCTTTG GGCGTGAATG
1500 |
var(1472):[C:0.14]
TGGGGCAAGA AGGGGGGGGG
G
AGACCTGTG GGTGTCTCTT TTGCCTGAGG
1550 |
var(1521):[:0.01]
AGTTGGAGAC ACTTGTGGAA AAGTCAGGCC CTTTTCGCTC CGGCGGCCGC
1600
TCCGGTGTGG GGCTGGCTTG GGTTAGACAC ATGCACACAT ACACCATAGA
1650
GCTCTGCTTT CCCGTAGCAG CTGCTGCCTC TGCCTCTGCC TCTCCCGCCT
1700
CAGCCTCTTT GCCCGGCATA CACACACATT CAGATTTGCG CGCTGTTTCA
1750
ATCCTTGATG ACGTGTCCCC GGAGACAGCC AATAGCAAAC GGGCTCTGGT
1800
CAGGACAATG GGAGGTATCG GGCCAATGAG CGAGCCCCGT GAGTTGGCGG
1850
TAGCCAATAG GAGCCGCGCT GGC
T
G
G
A
G
A
G
T
A
A
T
G
T
T
A
C
A
G
A
G
C
G
G
A
G
A
G
1900 | Exon 1 |
UTR
A
G
T
G
A
G
G
A
G
G
C
T
G
C
G
T
C
T
G
G
C
T
C
C
C
G
C
T
C
T
C
A
C
A
G
C
C
A
T
T
G
C
A
G
T
A
C
A
T
T
1950 |
var(1929):[T:0.01]
G
A
G
C
T
C
C
A
T
A
G
A
G
A
C
A
G
C
G
C
C
G
G
G
G
C
A
A
G
T
G
A
G
A
G
C
C
G
G
A
C
G
G
G
C
A
C
T
G
G
2000 |
var(1969):[A:0.04]
G
C
G
A
C
T
C
T
G
T
G
C
C
T
C
G
C
T
G
A
G
G
GTGAGTCT GGGGCAGCGC CGCGGCGGGG
2050
AGAGCGCCTC CGGCAGCTCC CCAGCCCGCG CGGCGGCCGG ATCCCCGCGG
2100
CCGGGAGCCG GCGGGTCAGG ATCCACACAA AGGCAAATGA GGGGGGACCG
2150
TGGGGGGAAC TGCGCACGGA GC
G
AGCCTCT GCCCGGGCGC CGGGAACGCT
2200 |
var(2173):[A:0.07]
GCCCCGCGCC GGTGCCCCGG CCCTCAGGCA GCCTGAGGCG CCGGGAGCCC
2250
CGCGCCCCGC GAGTTTCCAC CCCCGGCGGC GT
C
C
G
C
G
C
T
G
A
C
T
G
G
C
G
C
A
A
2300 |
NOT SCANNED
A
A
A
A
A
A
A
A
A
T
T
T
T
T
T
T
T
T
T
A
A
T
T
A
A
A
A
A
A
A
T
T
T
T
G
A
A
C
G
T
G
T
T
T
T
G
G
G
C
C
2350
C
T
C
G
G
G
C
C
G
G
G
C
G
T
T
C
G
G
G
C
G
G
G
C
G
G
C
G
T
G
C
G
C
G
G
A
G
C
G
C
G
G
C
C
G
G
G
G
C
G
2400
G
C
G
G
G
G
C
C
G
G
C
G
C
G
G
C
T
C
G
G
C
G
G
C
G
G
C
G
G
C
G
G
G
A
G
G
G
C
A
G
C
G
G
C
G
G
C
G
C
T
2450
T
C
C
C
C
G
G
G
C
T
G
C
A
T
T
G
G
C
C
G
C
C
G
C
C
G
C
A
G
C
G
A
G
C
C
G
G
G
C
G
C
T
G
G
C
G
G
G
G
A
2500
G
C
G
C
G
G
C
C
A
G
C
C
G
G
G
C
G
G
G
C
G
G
C
G
G
G
G
C
G
G
G
C
G
G
G
G
C
G
C
C
G
C
G
G
C
G
G
G
C
G
2550
A
G
G
G
C
G
G
C
G
C
G
G
G
G
G
C
C
T
G
G
G
G
G
C
G
G
C
A
G
T
G
C
G
G
G
C
C
C
G
G
C
C
G
G
C
C
T
C
G
G
2600
C
C
C
G
G
T
C
G
C
G
G
C
G
G
C
G
G
C
G
G
C
G
G
C
C
G
G
G
C
G
G
C
G
G
G
G
G
G
A
G
C
G
G
C
G
C
C
G
C
T
2650
G
C
G
C
T
C
G
C
T
G
G
A
A
C
A
T
G
G
C
T
G
A
C
T
C
G
G
G
C
C
C
G
G
C
G
C
T
G
C
T
G
G
C
T
G
G
A
G
A
G
2700
A
A
A
A
C
A
A
G
G
C
G
G
G
C
G
G
G
C
G
G
G
G
G
A
G
C
T
G
G
G
C
G
C
A
G
C
A
G
T
T
C
C
G
A
G
G
C
A
A
C
2750
T
T
T
T
T
T
T
T
T
C
C
T
C
T
C
T
C
T
T
T
T
C
A
C
A
G
C
C
C
C
G
C
G
T
T
C
T
C
C
G
T
G
C
G
G
G
G
G
C
G
2800
G
C
G
G
G
G
C
G
C
G
C
G
G
C
C
C
G
C
G
C
G
G
A
G
G
G
A
G
A
C
G
G
G
G
A
G
T
G
G
C
G
G
G
C
G
G
G
T
G
G
2850
G
C
C
C
T
C
G
G
G
C
G
G
C
C
C
C
C
A
C
C
G
C
G
G
C
G
G
G
G
G
G
A
G
G
G
G
A
G
C
G
G
C
G
C
G
G
A
G
G
G
2900
G
A
G
G
G
C
C
C
G
G
C
C
G
C
G
C
G
C
C
C
C
C
C
G
C
C
C
C
T
C
C
C
C
C
G
G
C
C
G
T
A
A
T
G
G
C
C
G
A
G
2950
T
G
T
G
T
G
C
G
C
C
A
G
A
G
C
G
C
G
G
C
T
C
G
C
A
C
C
C
C
G
C
C
C
G
C
C
G
C
C
G
C
C
G
C
C
G
C
G
C
C
3000
C
G
C
A
C
C
C
T
C
G
C
A
C
T
C
A
C
A
C
A
C
T
C
T
C
T
C
A
T
A
C
A
C
A
C
A
C
A
C
A
C
A
C
A
C
A
C
A
C
A
3050
C
A
C
A
C
A
A
A
G
G
G
A
A
G
G
A
G
C
C
A
T
A
T
T
C
T
C
G
C
T
C
G
C
G
C
T
C
G
C
C
C
T
C
G
C
G
G
C
G
G
3100
C
G
G
C
G
G
C
G
C
A
G
G
C
G
G
A
G
A
A
G
A
C
G
C
G
C
A
G
C
G
G
C
C
A
T
T
C
C
G
T
G
C
G
C
G
C
C
G
G
C
3150
C
C
C
G
G
C
G
G
C
C
G
C
G
G
G
C
G
G
A
G
C
C
A
G
C
C
C
C
C
A
T
T
T
C
G
A
G
C
G
G
G
G
C
T
T
C
T
C
C
C
3200
T
G
C
G
C
C
G
A
G
C
C
T
G
A
C
A
A
A
A
T
G
G
G
G
G
C
G
G
C
G
G
C
G
G
C
G
C
G
G
G
C
C
T
G
C
A
G
G
G
C
3250
C
T
G
C
C
G
G
G
C
G
C
A
C
G
T
G
G
C
G
G
C
C
T
C
G
G
G
C
C
T
G
G
G
A
G
C
C
G
G
G
C
C
G
C
G
T
C
C
T
C
3300
T
C
T
C
C
T
C
G
G
C
C
G
C
G
C
G
G
C
C
A
C
C
G
G
C
G
A
A
G
T
T
C
T
A
G
G
G
G
C
G
G
G
G
G
G
C
T
C
G
C
3350
C
C
C
G
C
G
C
A
G
G
A
G
T
C
A
C
C
C
C
A
A
C
T
T
T
C
A
C
G
G
C
T
C
C
A
A
A
A
A
A
T
A
C
T
T
C
C
C
G
A
3400
G
T
T
G
G
G
G
G
A
G
G
G
G
G
C
C
A
C
C
G
A
G
C
C
A
C
G
A
G
C
A
G
G
A
G
T
G
G
C
T
T
T
T
G
T
C
C
C
T
C
3450
A
T
C
C
T
T
G
T
T
T
A
C
T
C
G
G
A
G
A
A
A
C
T
T
C
A
G
A
C
C
G
G
A
C
G
T
G
T
T
T
A
G
T
C
A
G
A
A
C
A
3500
G
A
A
A
T
A
C
A
T
C
T
C
A
G
G
G
C
C
A
A
A
C
C
G
A
T
A
G
G
A
A
A
C
G
A
G
G
C
T
G
C
C
T
C
G
C
G
G
T
G
3550
G
C
A
C
C
G
C
C
A
C
C
C
C
C
C
A
A
C
C
G
G
G
T
T
C
C
G
A
G
C
A
C
C
G
G
A
G
C
T
G
G
C
T
G
C
T
G
C
T
C
3600
C
C
T
C
T
T
T
G
G
A
G
C
A
A
A
G
T
T
T
T
A
T
G
C
A
A
A
G
A
G
G
G
T
G
T
T
T
T
T
T
G
A
A
A
C
T
T
T
C
G
3650
G
T
G
C
A
C
G
G
T
G
A
T
T
T
T
T
T
T
T
T
T
T
T
A
A
G
G
T
C
C
C
A
T
A
A
T
T
A
G
G
A
A
G
A
G
T
C
G
A
C
3700
T
C
G
C
T
T
A
G
G
C
C
C
T
T
G
T
T
T
A
T
T
C
C
C
T
A
T
C
T
A
G
T
G
C
A
A
A
G
C
C
A
C
G
A
A
T
T
G
G
C
3750
A
G
C
A
T
G
T
T
T
T
C
T
G
A
C
C
T
T
T
G
G
T
T
T
G
G
T
T
G
G
T
T
T
A
A
A
A
T
G
G
T
G
T
T
C
T
A
G
A
T
3800
T
T
T
A
A
A
A
T
C
G
T
T
T
A
A
G
T
G
A
C
C
A
G
T
T
A
G
A
T
A
C
T
C
A
T
T
C
A
G
A
G
C
A
G
A
C
T
C
G
G
3850
G
C
G
G
A
T
A
G
A
T
A
G
G
G
A
A
T
A
C
T
G
T
A
T
G
G
G
T
A
T
A
T
C
T
T
T
G
T
G
T
C
T
A
G
A
C
T
T
T
T
3900
T
G
A
G
A
T
C
G
C
C
C
T
G
A
A
G
G
A
C
T
G
T
T
T
T
T
G
T
T
T
T
G
T
T
T
T
G
T
T
T
G
C
T
T
G
G
C
A
T
A
3950
G
C
C
C
C
T
T
C
A
A
G
G
A
A
T
T
T
A
A
T
C
T
C
T
C
G
G
C
C
A
T
A
T
T
C
TTGTC TGATTTTACG
4000
GAGGTTGATG TCGCTACTGT GTTAAATAAC CAGTACTTTG GTTTTCATTC
4050
C
C
TTACTAAG TACTTTAAGG TCTTATATGT CATAATTTTA TTGCTAACAT
4100 |
var(4052):[G:0.22]
CAAATATTTA TTTTATTTTT TAG
A
A
A
A
A
T
A
A
C
T
A
A
A
C
A
T
G
G
G
C
A
A
A
G
G
A
G
4150 | Exon 2 |
UTR
M G K G 4
A
T
C
C
T
A
A
G
A
A
G
C
C
G
A
G
A
G
G
C
A
A
A
A
T
G
T
C
A
T
C
A
T
A
T
G
C
A
T
T
T
T
T
T
G
T
G
C
A
A
4200
D P K K P R G K M S S Y A F F V Q 21
A
C
T
T
G
T
C
G
G
G
A
G
G
A
G
C
A
T
A
A
G
A
A
G
A
A
G
C
A
C
C
C
A
G
A
T
G
C
T
T
C
A
G
T
C
A
A
C
T
T
4250
T C R E E H K K K H P D A S V N F 38
C
T
C
A
G
A
G
T
T
T
T
C
T
A
A
G
A
A
G
T
G
C
T
C
A
G
A
G
A
G
G
T
G
G
A
A
G
GTA AGAGGGCTTA
4300
S E F S K K C S E R W K 50
AAACATGCTA ACAAGGTAAT TAAAAGACAG TTTCCAATTG AGGATGCAAA
4350
AAAAAGCCTA GTTGGCATTC TCGTAGTGGG ACGCTATTAC ATAGCAAAAG
4400
ACATTGGTTT TGAGGATAAT TTACTTAAAT GTTACAACTT AAACTTACAA
4450
ATAATTATTT TGTAG
A
C
C
A
T
G
T
C
T
G
C
T
A
A
A
G
A
G
A
A
A
G
G
A
A
A
A
T
T
T
G
A
A
G
A
4500 | Exon 3
T M S A K E K G K F E D 62
T
A
T
G
G
C
A
A
A
A
G
C
G
G
A
C
A
A
G
G
C
C
C
G
T
T
A
T
G
A
A
A
G
A
G
A
A
A
T
G
A
A
A
A
C
C
T
A
T
A
4550 |
var(4510):[G:0.16]
M A K A D K A R Y E R E M K T Y 78
T
C
C
C
T
C
C
C
A
A
A
G
G
G
G
A
G
A
C
A
A
A
A
A
A
G
A
A
G
T
T
C
A
A
G
G
A
T
C
C
C
A
A
T
G
C
A
C
C
C
4600
I P P K G E T K K K F K D P N A P 95
A
A
G
A
G
G
C
C
T
C
C
GTGAGTATC TTGCCTGTTT TTACTTCCCA GACACGTTTT
4650
K R P P 99
ACAGTAGAAT CTGAGAGAAA TTTAGCAAGC TACTTTGTCA GTTTAGAGTG
4700
TAAATGTACA ATCAAA
G
TTT CTTAGCTAAT ACTTGTTCAT A
T
TGGTTATA
4750 |
var(4717):[A:0.01]
|
var(4742):[C:0.14]
TTTAAATAGT ATAAAATTCC TGTTGGGTGG GAGTGTTCCC AGAGCATTTG
4800
AATTAGACAT TTGGTCTCCT TTGCCCAGTG TATCTCCTTT TGATCTTTTT
4850
ATTTCTTGAA AAATACTATC CCTTTGAAAT AGTGTAATTG TAGAATGTTC
4900
ATCTAGGGTT CTAGCTAGTA TAAATTAAAT AGTTGTAAAT TAAGCTTTGG
4950
TTGTGAAGGA TATTTAGTAT ATTATAGTAT TTGCACCCTG TCCAATGCAT
5000
CACAGAAATT CACAGGCAGC TTTAAATAGC AATGCAGTGT ACACTTGATA
5050
GTATTTGTTT TTGTGATCTG TTAACTTAAA ATCCTAAAAT TAATTTTTTT
5100
TTTAG
T
T
C
G
G
C
C
T
T
C
T
T
C
C
T
C
T
T
C
T
G
C
T
C
T
G
A
G
T
A
T
C
G
C
C
C
A
A
A
A
A
T
C
A
A
5150 | Exon 4 |
var(5118):[T:0.14]
S A F F L F C S E Y R P K I K 114
A
G
G
A
G
A
A
C
A
T
C
C
T
G
G
C
C
T
G
T
C
C
A
T
T
G
G
T
G
A
T
G
T
T
G
C
G
A
A
G
A
A
A
C
T
G
G
G
A
G
5200
G E H P G L S I G D V A K K L G 130
A
G
A
T
G
T
G
G
A
A
T
A
A
C
A
C
T
G
C
T
G
C
A
G
A
T
G
A
C
A
A
G
C
A
G
C
C
T
T
A
T
G
A
A
A
A
G
A
A
G
5250
E M W N N T A A D D K Q P Y E K K 147
G
C
T
G
C
G
A
A
G
C
T
G
A
A
G
G
A
A
A
A
A
T
A
C
G
A
A
A
A
G
GTAAGAAGTG TGGGTTTGCT
5300 |
var(5274):[T:0.09]
|
var(5275):[C:0.01]
A A K L K E K Y E K 157
TGGTAAAATG AT
G
ACAAGTA CGCCAGATGT ATGATTGTAC TTAGTTTGAG
5350 |
var(5313):[C:0.21]
GTGTAATAAG TTTTTAGGGT AACAGCTACA TTAAGTATGG TGTTGAT
A
TA
5400 |
var(5398):[G:0.01]
AGTCCTCATC
C
TTCAAAGAA TGCAGAGGAC CAAATAAATT AGGGTTTTTT
5450 |
var(5411):[T:0.01]
TGACTAAAAT GTAATCAGAC TCAGACAAAG GCTGTGTACA TTTATGTTGG
5500
TTTTGTTATT CCCCAGTATC TTGAAGTTCA TGAAAATGTT GGTAGTCACT
5550
TCAAGTCAAA AATGAGCATT TTCAAATGGC TTGGCATAC
A
GTACAAAAAC
5600 |
var(5590):[G:0.16]
AGGCTAGACA AAGTAATATA GGCTATATTT TTCTTAGTCA TATCCTGAAA
5650
CATTTATGTT CTTTTCCTTT AGATACTCAA AAAACCACAG CATCACTAAG
5700
TTAAATTACA AGTCTGCTGC TCTGTCCAGT AAATTAATAA GATTAAGGAA
5750
ATCTATAACT CTTATAGTTC AGTAAATTGA AATATTAAAT ACTTAATTTT
5800
CAGCTTTAGT CATTCTGAAA AGTGTTTATT TCTAGATGTT TCTTAACCTA
5850
ATTGCATGTT TATTGACAAA TTACCTTTTT TTTTTAAGAC CACATTTCCT
5900
ACTAAGGATT AAGGTCTGAC AGTGTAAACC TGTAGAGTGC TTTTTTGCAT
5950
TCAGAAGGTG GCAGTGTCTA CCCTTTAATC AAAGTCTCTA CATTCTGGTT
6000
TTAATAGAGT TAGGATGTGG TACATAATTG CACCTCAATG AGGCATAACT
6050
TTGCAAATAT TAGACTATGC CATTTCATGA GTTATAGATT GTTATAAT
G
A
6100 |
var(6099):[:0.01]
T
CTTGTATTT TTATGTTCAT TTATTGAAGT TCTAGTTATT TCTGGAGTTG
6150
CTGTGGATCT ACAGATACGT GATATTTTGG TATAACTAGA ATCTTGATTT
6200
CTTTCATAAA GTTCTGCCAT GTTCTATTTC TTTCCTTAAT GTTTTTTTCT
6250
TCCCTACTGT TTTATCCTCC CTTTGCTTTG GAAG
G
A
T
A
T
T
G
C
T
G
C
A
T
A
T
C
6300 | Exon 5
D I A A Y 162
G
A
G
C
T
A
A
A
G
G
A
A
A
G
C
C
T
G
A
T
G
C
A
G
C
A
A
A
A
A
A
G
G
G
A
G
T
T
G
T
C
A
A
G
G
C
T
G
A
A
6350
R A K G K P D A A K K G V V K A E 179
A
A
A
A
G
C
A
A
G
A
A
A
A
A
G
A
A
G
G
A
A
G
A
G
G
A
G
G
A
A
G
A
T
G
A
G
G
A
A
G
A
T
G
A
A
G
A
G
G
A
6400
K S K K K K E E E E D E E D E E D 196
T
G
A
G
G
A
G
G
A
G
G
A
G
G
A
A
G
A
T
G
A
A
G
A
A
G
A
T
G
A
A
G
A
T
G
A
A
G
A
A
G
A
A
G
A
T
G
A
T
G
6450
E E E E E D E E D E D E E E D D 212
A
T
G
A
T
G
A
A
T
A
A
G
T
T
G
G
T
T
C
T
A
G
C
G
C
A
G
T
T
T
T
T
T
T
T
T
T
C
T
T
G
T
C
T
A
T
A
A
A
G
6500 |
UTR
D D E 215
C
A
T
T
T
A
A
C
C
C
C
C
C
T
G
T
A
C
A
C
A
A
C
T
C
A
C
T
C
C
T
T
T
T
A
A
A
G
A
A
A
A
A
A
A
T
T
G
A
A
6550
A
T
G
T
A
A
G
G
C
T
G
T
G
T
A
A
G
A
T
T
T
G
T
T
T
T
T
A
A
A
C
T
G
T
A
C
A
G
T
G
T
C
T
T
T
T
T
T
T
G
6600
T
A
T
A
G
T
T
A
A
C
A
C
A
C
T
A
C
C
G
A
A
T
G
T
G
T
C
T
T
T
A
G
A
T
A
G
C
C
C
T
G
T
C
C
T
G
G
T
G
G
6650
T
A
T
T
T
T
C
A
A
T
A
G
C
C
A
C
T
A
A
C
C
T
T
G
C
C
T
G
G
T
A
C
A
G
T
A
T
G
G
G
G
G
T
T
G
T
A
A
A
T
6700
T
G
G
C
A
T
G
G
A
A
A
T
T
T
A
A
A
G
C
A
G
G
T
T
C
T
T
G
T
T
G
G
T
G
C
A
C
A
G
C
A
C
A
A
A
T
T
A
G
T
6750
T
A
T
A
T
A
T
G
G
G
G
A
T
G
G
T
A
G
T
T
T
T
T
T
C
A
T
C
T
T
C
A
G
T
T
G
T
C
T
C
T
G
A
T
G
C
A
G
C
T
6800
T
A
T
A
C
G
A
A
A
T
A
A
T
T
G
T
T
G
T
T
C
T
G
T
T
A
A
C
T
G
A
A
T
A
C
C
A
C
T
C
T
G
T
A
A
T
T
G
C
A
6850
A
A
A
A
A
A
A
A
A
A
A
A
A
A
G
T
T
G
C
A
G
C
T
G
T
T
T
T
G
T
T
G
A
C
A
T
T
C
T
G
A
A
T
G
C
T
T
C
T
A
6900
A
G
T
A
A
A
T
A
C
A
A
T
T
T
T
T
T
T
T
A
T
T
A
G
T
A
T
T
G
T
T
G
T
C
C
T
T
T
T
C
A
T
A
G
G
T
C
T
G
A
6950
A
A
T
T
T
T
T
C
T
T
C
T
T
G
A
G
G
G
G
A
A
G
C
T
A
G
T
C
T
T
T
T
G
C
T
T
T
T
G
C
C
C
A
T
T
T
T
G
A
A
7000
T
C
A
C
A
T
G
A
A
T
T
A
T
T
A
C
A
G
T
G
T
T
T
A
T
C
C
T
T
T
C
A
T
A
T
A
G
T
T
A
G
C
T
A
A
T
A
A
A
A
7050
A
G
C
T
T
T
T
G
T
C
T
A
C
A
C
A
C
C
C
T
G
C
A
T
A
T
C
A
T
A
A
T
G
G
G
G
G
T
A
A
A
G
T
T
A
A
G
T
T
G
7100
A
G
A
T
A
G
T
T
T
T
C
A
T
C
C
A
T
A
A
C
T
G
A
A
C
A
T
C
C
A
A
A
A
T
C
T
T
G
A
T
C
A
G
T
T
A
A
G
A
A
7150
A
T
T
T
C
A
C
A
T
A
G
C
C
C
A
C
T
T
A
C
A
T
T
T
A
C
A
A
A
C
T
G
A
A
G
A
G
T
A
A
T
C
A
A
T
C
T
A
C
T
7200
C
A
A
A
G
C
A
T
G
G
G
A
T
T
A
T
T
A
G
A
A
T
C
A
A
A
C
A
T
T
T
T
G
A
A
A
G
T
C
T
G
T
C
C
T
T
G
A
A
G
7250
G
A
C
T
A
A
T
A
G
A
A
A
A
G
T
A
T
G
T
T
C
T
A
A
C
C
T
T
T
A
C
A
T
G
A
G
G
A
C
T
C
T
A
T
T
C
T
T
T
A
7300
A
C
T
C
C
C
A
T
T
A
C
C
A
T
G
T
A
A
T
G
G
C
A
G
T
T
A
T
A
T
T
T
T
G
C
A
G
T
T
C
C
C
A
C
A
T
T
A
A
A
7350
G
A
A
G
A
C
C
T
G
A
G
A
A
T
G
T
A
T
C
C
C
C
A
A
A
A
G
C
G
T
G
A
G
C
T
T
A
A
A
A
T
A
C
A
A
G
A
C
T
G
7400
C
C
A
T
A
T
T
A
A
A
T
T
T
T
T
T
G
T
T
G
A
C
A
T
T
A
G
T
C
T
C
A
G
T
G
A
A
G
A
C
T
A
T
G
A
A
A
A
T
G
7450
C
T
G
G
C
T
A
T
A
G
A
T
G
T
C
T
T
T
T
C
C
C
A
T
T
T
A
T
C
T
A
A
A
T
A
T
G
G
A
C
T
G
C
T
C
A
G
G
A
A
7500
A
C
G
A
G
A
C
T
T
T
C
C
A
T
T
A
C
A
A
G
T
A
T
T
T
T
T
A
A
T
T
A
A
T
T
G
G
G
C
C
A
G
C
T
T
T
T
C
A
A
7550 |
var(7512):[:0.22]
|
var(7531):[:0.16]
A
C
A
A
A
A
G
A
T
G
C
C
A
C
A
T
T
C
A
A
A
A
T
A
G
G
G
T
A
T
A
T
T
T
T
C
C
T
A
T
A
T
T
A
C
G
G
T
T
T
7600 |
var(7551):[G:0.05]
|
var(7556):[:0.91]
G
C
C
C
C
T
T
T
A
T
A
A
A
T
C
C
A
A
G
T
A
G
A
T
A
G
G
A
A
G
A
A
A
G
A
A
G
A
C
A
A
A
C
T
T
T
G
C
A
T
7650 |
var(7627):[:0.12]
C
T
C
A
G
T
A
T
G
A
A
T
T
A
T
T
C
A
A
T
T
T
A
T
T
T
G
A
A
T
G
A
T
T
T
T
T
C
T
T
T
A
C
A
A
A
A
C
A
A
7700
A
C
T
C
A
T
T
C
A
T
T
A
G
T
C
A
T
G
T
T
T
A
T
C
T
G
C
T
T
A
G
G
A
G
T
T
T
A
G
G
G
A
A
C
A
A
T
T
T
G
7750
G
C
A
A
T
T
T
T
G
T
G
G
T
T
T
T
C
G
A
G
A
T
T
A
T
C
G
T
T
T
T
C
T
T
A
A
A
G
T
G
C
C
A
G
T
A
T
T
T
T
7800
A
A
A
A
T
A
G
C
G
T
T
C
T
T
G
T
A
A
T
T
T
T
A
C
A
C
G
C
T
T
T
T
G
T
G
A
T
G
G
A
G
T
G
C
T
G
T
T
T
T
7850
G
T
T
A
T
A
T
A
A
T
T
T
A
G
A
C
T
T
G
G
A
T
T
C
T
T
T
C
C
A
T
T
T
G
C
A
T
T
T
G
T
T
T
A
T
G
T
A
A
T
7900
T
T
C
A
G
G
A
G
G
A
A
T
A
C
T
G
A
A
C
A
T
C
T
G
A
G
T
C
C
T
G
G
A
T
G
A
T
A
C
T
A
A
T
A
A
A
C
T
A
A
7950
T
A
A
T
T
G
C
A
G
A
G
G
T
T
T
T
A
A
A
T
A
C
T
A
G
T
T
A
A
A
T
G
G
C
T
T
T
C
A
C
T
T
A
A
G
A
A
C
T
T
8000
A
A
G
A
T
T
T
T
G
T
T
A
C
A
T
A
T
T
T
T
T
A
A
A
T
C
T
T
G
T
T
T
C
T
A
A
T
A
A
T
A
C
C
T
C
T
T
A
G
C
8050
A
G
T
A
C
C
T
T
T
T
A
A
A
T
A
A
G
T
A
T
A
A
G
G
G
A
T
G
G
C
A
A
A
G
T
T
T
T
T
C
C
C
T
T
T
A
A
A
A
A
8100
T
A
C
T
C
A
C
T
T
T
A
T
G
C
T
T
A
T
A
A
A
T
A
G
G
T
T
A
A
T
G
G
G
C
T
G
A
T
A
A
A
A
G
G
T
T
T
T
G
T
8150
C
A
A
A
C
A
T
T
G
C
A
A
G
T
A
T
T
C
G
G
T
G
C
T
A
T
A
T
A
T
A
A
A
G
G
A
G
G
A
A
A
A
A
C
T
A
G
T
T
T
8200
T
A
C
T
T
T
C
A
G
A
A
T
G
A
T
T
T
A
A
A
C
A
A
G
A
T
T
T
T
T
A
A
A
A
A
C
A
A
G
A
T
A
C
A
T
G
C
A
A
G
8250 |
var(8237):[:0.01]
C
G
A
A
C
A
G
C
A
G
G
G
T
T
A
G
T
G
A
T
A
G
G
C
T
G
C
A
A
T
T
G
T
G
T
C
G
A
A
C
A
T
C
A
G
A
T
T
T
T
8300
T
T
G
T
T
A
A
G
A
G
G
A
G
C
A
A
A
T
G
A
C
T
C
A
A
T
C
T
G
A
T
T
T
A
G
A
T
G
G
A
A
G
T
T
T
C
T
A
C
T
8350 |
var(8307):[:0.01]
G
T
A
T
A
G
A
A
A
T
C
A
C
C
A
T
T
A
A
T
C
A
C
C
A
A
C
A
T
T
A
A
T
A
A
T
T
C
T
G
A
T
C
C
A
T
T
T
A
A
8400
A
A
T
G
A
A
T
T
C
T
G
G
C
T
C
A
A
G
G
A
G
A
A
T
T
T
G
T
A
A
C
T
T
T
A
G
T
A
G
G
T
A
C
G
T
C
A
T
G
A
8450
C
A
A
C
T
A
C
C
A
T
T
T
T
T
T
T
A
A
G
A
T
G
T
T
G
A
G
A
A
T
G
G
G
A
A
C
A
G
T
T
T
T
T
T
T
A
G
G
G
T
8500
T
T
A
T
T
C
T
T
G
A
C
C
A
C
A
G
A
T
C
T
T
A
A
G
A
A
A
A
T
G
G
A
C
A
A
A
A
C
C
C
C
T
C
T
T
C
A
A
T
C
8550 |
var(8544):[C:0.01]
T
G
A
A
G
A
T
T
A
G
T
A
T
G
G
T
T
T
G
G
T
G
T
T
C
T
A
A
C
A
G
T
A
T
C
C
C
C
T
A
G
A
A
G
T
T
G
G
A
T
8600
G
T
C
T
A
A
A
A
C
T
C
A
A
G
T
A
A
A
T
G
G
A
A
G
T
G
G
G
A
G
G
C
A
A
T
T
T
A
G
A
T
A
A
T
T
A
A
G
T
G
8650 |
var(8644):[:0.61]
T
A
A
A
G
C
C
T
T
G
T
A
A
C
T
G
A
A
G
A
T
G
A
T
T
T
T
T
T
T
T
A
G
A
A
A
G
T
G
T
A
T
A
G
A
A
A
C
T
A
8700
T
T
T
T
A
A
T
G
C
C
A
A
G
A
T
A
G
T
T
A
C
A
G
T
G
C
T
G
T
G
G
G
G
T
T
T
A
A
A
G
A
C
T
T
T
G
T
T
G
A
8750 |
var(8728):[A:0.23]
|
var(8745):[G:0.15]
C
A
T
C
A
A
G
A
A
A
A
G
A
C
T
A
A
A
T
C
T
A
T
A
A
T
T
A
A
T
T
G
G
G
C
C
A
A
C
T
T
T
T
A
A
A
A
T
G
A
8800 |
var(8779):[G:0.01]
A
G
A
T
G
C
T
T
T
T
T
A
A
A
A
C
T
A
A
T
G
A
A
C
T
A
A
G
A
T
G
T
A
T
A
A
A
T
C
T
T
A
G
T
T
T
T
T
T
T
8850
G
T
A
T
T
T
T
A
A
A
G
A
T
A
G
G
C
A
T
A
T
G
G
C
A
T
A
T
T
G
A
T
T
A
A
C
G
A
G
T
C
A
A
A
T
T
T
C
C
T
8900 |
var(8887):[A:0.01]
A
A
C
T
T
T
G
C
T
G
T
G
C
A
A
A
G
G
T
T
G
A
G
A
G
C
T
A
T
T
G
C
T
G
A
T
T
A
G
T
T
A
C
C
A
C
A
G
T
T
8950 |
var(8918):[A:0.01]
C
T
G
A
T
G
A
T
C
G
T
C
C
C
A
T
C
A
C
A
G
T
G
T
T
G
T
T
A
A
T
G
T
T
T
G
C
T
G
T
A
T
T
T
A
T
T
A
A
T
9000
T
T
T
C
T
T
A
A
A
G
T
G
A
A
A
T
C
T
G
A
A
A
A
A
T
G
A
A
A
T
T
T
G
T
G
T
G
T
C
C
T
G
T
G
T
A
C
C
C
G
9050
A
G
G
G
G
T
A
A
T
G
A
T
T
A
A
A
T
G
A
T
A
A
A
G
A
T
A
A
G
A
A
A
A
GCGCCCA TGTAACACAA
9100
ACTGCCATTC AACAGGTATT TCCCTTACTA CCTAAGGAAT TGTAACCATT
9150
GCTCAGACAT TGTAGGATTT AACTATGTTG AAAACTACAG GAGA
G
G
C
C
G
G
9200 |
REPEAT
|
var(9199):[A:0.02]
G
C
G
C
A
G
T
G
G
C
T
C
A
C
G
C
C
T
G
T
A
A
T
C
C
C
A
G
C
A
C
T
T
T
G
G
G
A
G
G
C
C
A
A
G
G
C
G
G
G
9250 |
var(9205):[G:0.02]
|
var(9211):[C:0.01]
|
var(9243):[G:0.07]
C
A
G
A
T
C
A
C
G
A
G
G
T
C
A
G
G
A
G
A
T
T
G
A
G
A
C
C
A
T
C
C
T
G
G
C
T
A
A
C
G
T
G
G
T
G
A
A
A
C
9300 |
var(9263):[C:0.16]
|
var(9291):[A:0.03]
C
C
C
G
C
C
T
C
T
A
C
T
A
A
A
A
A
T
A
C
A
A
A
A
A
A
T
T
A
G
C
C
A
A
G
C
G
T
G
G
T
G
C
T
G
G
G
C
G
C
9350 |
var(9326):[G:0.01]
C
T
G
T
A
G
T
C
C
C
A
G
T
A
A
C
T
C
A
G
G
A
G
G
C
T
G
A
G
G
C
A
G
G
A
G
A
A
T
G
G
C
G
T
G
A
A
C
C
C
9400
G
G
G
A
G
G
C
G
G
A
G
G
T
T
G
C
A
G
T
G
A
G
C
C
G
A
G
A
T
T
G
T
G
C
C
A
C
T
G
C
A
C
T
C
C
A
G
C
C
T
9450
G
G
G
T
G
A
C
A
G
A
G
C
A
A
G
A
C
T
C
C
A
T
C
T
C
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
A
CACAGGAGA
9500
GA
C
AACTGGT TTTTGAATGA AATACATGGG TACTGCCTTG CTTGACATCA
9550 |
var(9503):[T:0.15]
CATAGTCCTT GATGAAAGTT CACATTTAGG TCTGCTTGGT ACAATACGCC
9600
TCCTAAAAAG GTCCTTGATG AAAGTTCACA TTTAGGTCTG CTTGGTACAA
9650
CACGCCTCCT GAAAGGGTCT GATAGCTTTC AGTAGCAGTA AGACACTTGC
9700
ATGTGATGGT AAGGTATCTG CAAATTTGCA CACACCGTAC ACAGCTTAAG
9750
TCTTAGAATT AACTTGCTAA AATGTGAGCC TTTGGTAATT AGGCTGTTTT
9800
ATTAGGGAGT GTGATAATAT TTGAATTTCT TTTCATATTT GTGCTTTGTG
9850
TCATTTTCAA ATGACCCTTG AAATGTATTT TAAAACTAGA TAAAAGCCAG
9900
AAAGTGATTT GATTGTCTAT CCAGCAAAAG ATGGTGGTTC ATTTTCTTGT
9950
CCTCTTAATA CC