Site Allele1 AD-pop ED-pop Total-pop Allele2 AD-pop ED-pop Total-pop 000042 C 27 6 33 T 21 38 59 000462 A 28 7 35 T 20 37 57 000628 T 26 7 33 C 20 39 59 001143 T 22 10 32 G 24 34 58 001212 G 1 0 1 A 45 44 89 001223 T 22 7 29 C 24 37 61 001307 T 23 6 29 C 25 40 65 001471 G 21 5 26 A 27 41 68 001511 T 3 4 7 C 45 42 87 001543 A 21 1 22 G 27 45 72 001555 T 23 5 28 C 25 41 66 001556 A 1 0 1 G 47 46 93 001714 C 9 0 9 G 39 46 85 002005 C 8 32 40 T 40 14 54 002065 G 4 30 34 A 44 16 60 002293 G 28 16 44 A 20 30 50 002317 C 28 14 42 A 20 32 52 002334 G 28 14 42 C 20 32 52 002404 A 3 29 32 G 45 17 62 002414 T 27 14 41 G 21 32 53 002459 G 27 14 41 A 21 32 53 002538 A 1 0 1 T 47 46 93 002622 G 3 0 3 T 45 46 91 002948 A 20 14 34 G 28 32 60 003037 C 1 0 1 T 47 46 93 003342 C 12 9 21 T 36 37 73 003407 T 1 0 1 C 47 46 93 003538 T 29 6 35 G 19 40 59 003563 G 2 0 2 C 46 46 92 003613 C 29 6 35 T 19 40 59 003650 C 0 4 4 G 48 42 90 003910 - 23 1 24 + 25 45 70 003933 C 1 0 1 T 47 46 93 004056 C 29 6 35 T 19 40 59 004137 G 25 1 26 A 23 45 68 004232 - 29 6 35 + 17 40 57 004390 G 1 0 1 A 43 46 89 004424 T 1 0 1 C 43 46 89 004435 C 27 6 33 T 17 40 57 004448 G 2 0 2 C 42 46 88 004472 G 20 1 21 A 24 45 69 004536 T 0 1 1 C 46 45 91 004559 - 28 6 34 + 20 40 60 004681 A 1 0 1 T 47 44 91 004683 A 1 0 1 C 47 44 91 004686 A 1 0 1 G 47 44 91 004857 T 2 0 2 G 46 44 90 004969 C 1 0 1 T 47 46 93 014663 G 4 31 35 A 38 15 53 014666 T 25 6 31 C 17 40 57 014886 - 25 6 31 + 17 40 57 014991 G 4 31 35 A 38 15 53 015065 T 13 9 22 C 29 37 66 015196 T 1 0 1 C 47 46 93 015329 A 1 0 1 C 47 46 93 015502 G 6 31 37 C 42 15 57 015554 A 1 0 1 G 47 46 93 015594 - 28 5 33 + 20 37 57 015746 T 14 9 23 C 34 37 71 015810 A 28 6 34 T 20 40 60 015820 C 1 0 1 G 47 46 93 015852 G 6 31 37 A 42 15 57 016162 A 14 9 23 G 34 37 71 016229 + 26 5 31 - 20 39 59 016236 C 1 0 1 T 47 46 93 016393 G 28 6 34 A 20 40 60 016578 G 19 1 20 A 29 45 74 016699 G 14 9 23 C 34 37 71 016843 T 3 0 3 C 45 44 89 016924 T 15 9 24 C 33 35 68 016985 A 14 9 23 G 34 35 69 017003 T 11 9 20 C 37 35 72 017077 T 14 9 23 G 34 35 69 017339 - 3 0 3 + 43 40 83 017402 T 3 0 3 A 45 42 87 017429 G 0 1 1 C 48 41 89 017511 G 27 6 33 T 21 36 57 017522 G 28 6 34 A 20 36 56 017570 C 1 0 1 G 47 46 93 017612 G 1 0 1 A 47 46 93 017618 T 5 5 10 C 43 41 84 017619 A 22 1 23 G 26 45 71 017672 A 28 6 34 G 20 40 60 017811 T 5 5 10 C 43 41 84 017890 G 1 0 1 A 47 46 93 027064 G 17 8 25 A 19 38 57 027140 T 0 2 2 C 36 44 80 027488 G 9 2 11 C 21 26 47 027509 A 15 4 19 T 15 22 37 027579 T 2 0 2 C 28 26 54 027788 - 3 29 32 + 43 15 58 027850 C 23 1 24 T 25 45 70 027951 G 23 1 24 C 25 45 70 027975 C 22 1 23 T 26 45 71 028009 T 28 6 34 C 20 40 60 028047 C 6 5 11 A 42 41 83 028058 T 6 5 11 A 42 41 83 028481 T 1 0 1 C 47 46 93 028664 G 5 5 10 C 43 41 84 029061 C 1 0 1 G 47 46 93 029098 G 5 5 10 A 43 41 84 029201 - 20 1 21 + 24 45 69 029272 G 3 0 3 A 45 46 91 029273 A 11 8 19 G 37 38 75 029283 C 1 0 1 G 47 46 93 029372 A 22 1 23 T 26 45 71 029411 A 11 8 19 T 37 38 75 029484 C 1 0 1 A 47 46 93 029628 T 22 1 23 C 26 45 71 029629 G 1 0 1 C 47 46 93 029724 A 5 5 10 G 43 41 84 029884 A 22 1 23 G 26 45 71 029889 + 22 1 23 - 26 45 71 030089 G 28 6 34 A 20 40 60 030285 C 3 0 3 T 45 46 91 044926 T 0 16 16 C 48 28 76 044984 G 0 4 4 C 48 42 90 045256 G 26 18 44 A 22 28 50 045414 T 1 0 1 G 47 46 93 045502 A 1 0 1 G 47 46 93 045721 C 0 2 2 T 48 44 92 045727 T 1 0 1 G 47 46 93 045737 G 4 5 9 C 44 41 85 045929 A 1 8 9 G 43 20 63 046040 G 1 0 1 C 43 26 69 046145 A 20 14 34 G 24 12 36 046450 C 2 1 3 T 46 45 91 046607 T 25 18 43 C 23 28 51 046627 T 0 1 1 C 48 45 93 046687 T 24 18 42 G 20 28 48 046780 A 26 18 44 G 18 28 46 046817 C 18 25 43 G 26 21 47 046939 T 0 1 1 C 44 45 89 046941 A 18 26 44 G 26 20 46 047034 A 1 11 12 G 43 33 76 047055 C 24 17 41 T 16 27 43 047085 - 21 15 36 + 23 27 50 047116 - 26 17 43 + 18 27 45 047380 A 1 0 1 G 47 46 93 047420 A 20 6 26 C 28 40 68 047524 C 15 22 37 T 33 24 57 047535 - 26 18 44 + 22 28 50 047572 G 14 8 22 C 10 18 28 047791 T 26 18 44 C 22 28 50 047844 A 0 2 2 C 46 40 86 047845 A 1 11 12 G 43 31 74 052876 G 10 21 31 C 20 23 43 053264 A 1 0 1 C 29 44 73 053527 T 1 0 1 C 45 44 89 053564 + 1 0 1 - 45 44 89 053589 G 1 0 1 A 45 44 89 054045 G 2 0 2 A 44 46 90 054082 G 1 0 1 A 45 46 91 054092 T 1 0 1 G 45 44 89 054173 T 1 0 1 G 47 46 93 054799 T 2 0 2 C 46 46 92 055314 C 1 0 1 G 45 46 91 055426 A 3 0 3 G 45 46 91 055581 A 2 0 2 G 46 46 92 055972 - 1 0 1 + 47 46 93 056009 C 0 1 1 T 48 45 93 056014 T 0 1 1 C 48 45 93 056057 G 2 0 2 T 46 46 92 056229 T 1 0 1 A 47 46 93 056300 C 0 1 1 T 48 45 93 056326 C 0 1 1 G 48 45 93 056331 T 1 0 1 G 47 46 93 056389 T 1 0 1 C 47 46 93 056520 C 0 1 1 T 48 45 93 056630 T 1 0 1 C 47 46 93 065165 C 1 12 13 T 47 34 81 065241 G 2 0 2 C 46 46 92 065269 T 1 0 1 C 47 46 93 065339 G 1 0 1 A 47 46 93 065736 G 1 0 1 A 47 46 93 065886 T 4 0 4 C 44 46 90 066224 A 2 0 2 G 34 28 62 066269 A 2 0 2 G 34 28 62 066295 A 7 0 7 G 39 44 83 066652 T 2 8 10 C 46 38 84 066759 T 2 0 2 C 46 46 92 066886 A 0 1 1 G 46 41 87 066971 G 2 7 9 A 44 35 79 067700 T 4 5 9 C 38 29 67 068179 A 3 0 3 G 39 34 73 071520 A 2 6 8 G 40 34 74 071587 T 2 0 2 C 46 46 92 071649 A 2 0 2 G 46 46 92 072206 A 13 20 33 G 35 24 59 072331 T 2 0 2 C 44 46 90 072481 C 2 7 9 T 42 37 79 072858 A 2 0 2 G 46 46 92 073272 C 1 11 12 T 45 33 78 073646 A 19 7 26 C 25 39 64 073771 T 1 0 1 G 41 46 87 073773 C 1 0 1 G 41 46 87 073909 C 2 0 2 G 46 42 88 073913 A 0 3 3 G 48 39 87 073947 G 1 0 1 T 47 42 89 073975 + 2 0 2 - 46 42 88 074095 A 20 6 26 G 28 36 64 087993 G 17 21 38 A 31 19 50 088395 C 2 0 2 G 46 46 92 088658 C 4 0 4 G 44 46 90 088747 T 0 2 2 C 48 44 92 088876 T 14 0 14 C 34 46 80 089226 G 2 7 9 C 44 39 83 089242 C 0 1 1 T 46 45 91 089252 G 11 20 31 A 35 26 61 089437 T 0 1 1 G 46 45 91 089626 C 11 20 31 G 37 26 63 089972 T 1 0 1 C 47 44 91 093333 T 2 0 2 G 46 46 92 093684 A 0 1 1 G 48 43 91 093878 T 15 0 15 C 33 44 77 093975 A 3 0 3 G 45 44 89 094100 T 1 6 7 C 47 40 87 094114 T 0 1 1 C 48 45 93 094191 A 0 1 1 G 48 45 93 094219 T 0 18 18 C 48 28 76 094220 A 12 0 12 G 36 46 82 094445 A 20 14 34 G 28 32 60 094635 A 15 0 15 G 33 44 77 094693 A 1 0 1 G 47 44 91 094938 C 20 14 34 G 28 32 60 095048 C 18 14 32 T 28 30 58 095175 A 3 0 3 G 43 44 87 095297 A 1 6 7 G 47 40 87 095431 A 1 12 13 G 43 34 77 095654 A 0 1 1 G 44 45 89 095704 T 1 0 1 C 43 46 89 095759 G 1 0 1 A 47 46 93 095760 C 1 0 1 G 47 46 93 095871 G 5 8 13 A 41 38 79 095948 T 17 20 37 G 29 26 55 096317 A 14 20 34 G 26 22 48 105391 - 14 0 14 + 32 42 74 105468 A 14 17 31 G 32 25 57 105660 C 1 0 1 T 47 46 93 105906 A 3 0 3 C 45 46 91 106154 G 1 12 13 T 47 34 81 106461 T 24 14 38 C 24 32 56 106487 T 24 13 37 C 24 33 57 106570 G 14 0 14 A 34 46 80 106714 C 1 0 1 G 47 46 93 106823 T 1 12 13 C 47 34 81 107199 G 1 12 13 A 47 34 81 107476 T 3 0 3 C 45 46 91 107599 C 0 1 1 T 48 45 93 108026 T 2 0 2 A 46 46 92 108154 A 18 15 33 T 28 31 59 113294 C 2 0 2 T 44 42 86 113880 T 3 0 3 C 43 44 87 113946 A 2 0 2 G 44 44 88 113985 C 1 0 1 T 47 46 93 114066 C 1 0 1 T 47 46 93 114142 C 3 0 3 T 45 46 91 114610 T 1 2 3 C 45 44 89 114826 G 1 0 1 C 39 44 83 114932 T 1 0 1 C 45 44 89 115006 G 2 0 2 C 44 44 88 115152 T 2 0 2 C 44 42 86 115211 C 2 0 2 G 44 42 86 115412 A 5 8 13 G 41 36 77 115812 C 16 0 16 T 32 42 74 115980 G 2 0 2 T 46 42 88 121455 A 14 0 14 G 34 42 76 121613 C 0 1 1 T 48 45 93 121873 A 2 0 2 G 46 46 92 122017 A 1 0 1 T 43 46 89 122209 A 19 23 42 T 29 23 52 122234 A 2 0 2 G 44 46 90 122254 A 1 0 1 G 45 46 91 122344 T 3 0 3 A 45 46 91 122500 A 19 22 41 G 27 22 49 122556 G 6 0 6 T 40 44 84 122629 T 1 2 3 C 47 44 91 122771 C 2 0 2 G 44 40 84 123041 C 16 0 16 T 30 40 70 123079 T 1 0 1 A 41 40 81 123951 T 6 0 6 A 42 38 80 123960 A 2 0 2 G 46 42 88 124224 C 13 0 13 A 35 42 77 124276 A 2 0 2 G 46 42 88 124288 G 0 1 1 A 48 41 89 124397 G 1 11 12 C 43 33 76 124575 T 11 0 11 C 35 44 79 124627 C 1 3 4 G 45 41 86 124645 A 0 7 7 G 46 37 83 124693 C 14 22 36 A 32 20 52 136979 C 3 0 3 T 43 40 83 137160 A 0 3 3 G 46 37 83 137434 T 0 1 1 C 48 43 91 137472 T 1 0 1 G 47 44 91 138097 T 1 2 3 C 47 44 91 138122 C 3 0 3 A 43 46 89 138537 A 0 7 7 C 48 39 87 138680 C 2 0 2 G 46 46 92 138682 A 13 0 13 G 35 46 81 139156 G 0 10 10 A 36 30 66 139724 C 1 13 14 T 47 33 80 140421 A 0 7 7 G 46 27 73 140539 - 1 0 1 + 47 46 93 140889 T 1 0 1 C 43 42 85 140993 G 0 7 7 A 48 39 87 141128 T 1 3 4 A 47 43 90 141275 C 1 0 1 A 47 46 93 141329 G 2 0 2 A 46 46 92 141409 G 2 0 2 A 44 40 84 141684 A 1 3 4 C 45 37 82 141723 G 1 3 4 A 47 43 90 141873 C 1 0 1 G 47 46 93 141925 C 3 0 3 T 45 46 91 141991 T 0 1 1 C 48 45 93 142008 T 1 0 1 C 47 46 93 142135 T 0 2 2 C 48 42 90 142168 A 1 0 1 G 47 44 91 142239 C 1 0 1 T 47 44 91 142262 G 0 4 4 T 48 42 90 142332 A 3 0 3 G 45 46 91 142402 T 0 3 3 C 48 33 81 142473 G 0 2 2 A 48 34 82 142486 C 2 0 2 T 46 36 82 155006 G 16 0 16 C 32 42 74 155036 G 1 0 1 C 47 42 89 155180 A 0 7 7 G 48 37 85 155242 G 25 3 28 A 23 43 66 155489 G 1 12 13 C 47 34 81 155520 G 2 0 2 A 46 46 92 155879 G 1 0 1 C 47 46 93 155925 C 0 7 7 T 48 39 87 156285 T 2 0 2 C 44 44 88 156329 A 0 1 1 G 48 45 93 156377 T 1 0 1 C 45 46 91 156482 A 1 0 1 G 37 46 83 156747 A 1 0 1 G 47 46 93 156761 A 1 3 4 G 47 43 90 156812 A 0 7 7 G 46 39 85 156976 C 1 0 1 T 45 46 91 157201 A 13 0 13 G 35 46 81 157223 C 0 7 7 T 48 39 87 157573 A 0 7 7 T 36 39 75 158092 G 1 0 1 C 47 46 93 158227 A 0 2 2 G 46 30 76 158282 C 0 6 6 G 46 26 72 158363 T 12 0 12 C 32 32 64 165748 G 1 0 1 C 47 40 87 165974 C 0 4 4 T 48 42 90 166207 A 1 0 1 G 47 46 93 166576 A 0 8 8 G 48 38 86 166864 C 1 13 14 T 47 33 80 167431 C 13 0 13 T 35 46 81 167785 T 6 0 6 G 42 40 82 167792 A 1 0 1 G 47 40 87 167852 T 1 2 3 C 47 38 85 169811 A 1 3 4 G 45 39 84 169849 T 1 0 1 C 47 46 93 170006 G 1 0 1 A 47 46 93 170304 A 2 0 2 G 42 44 86 170383 A 11 18 29 T 31 24 55 170503 T 6 0 6 C 36 42 78 170720 A 1 0 1 C 41 40 81 170947 G 0 1 1 A 40 33 73 171220 T 0 1 1 G 42 41 83 171265 T 1 0 1 C 45 32 77 171278 T 1 2 3 C 45 26 71 171352 - 8 9 17 + 40 19 59 171437 A 6 21 27 G 42 7 49 171498 C 1 0 1 G 47 28 75 171654 T 4 19 23 C 44 27 71 171701 T 3 0 3 A 45 46 91 171741 A 0 1 1 G 48 45 93 172009 G 11 10 21 A 37 36 73 177417 T 11 5 16 C 33 41 74 177428 A 1 0 1 G 43 46 89 177654 T 0 6 6 G 44 40 84 177842 T 9 8 17 C 39 38 77 177873 A 15 14 29 G 33 32 65 177885 C 7 0 7 T 41 46 87 178135 G 13 5 18 C 35 41 76 178248 A 0 1 1 G 48 45 93 178306 G 3 14 17 C 45 32 77 178793 G 10 7 17 A 38 37 75 179143 T 1 0 1 C 47 44 91 187144 T 0 1 1 G 46 43 89 187507 C 7 0 7 G 41 46 87 187600 A 4 14 18 G 44 32 76 188226 G 2 0 2 A 46 46 92 188336 A 1 0 1 C 47 46 93 188536 A 4 0 4 C 42 42 84 189116 G 1 0 1 C 47 44 91 189229 T 2 2 4 C 42 40 82 189600 A 4 11 15 C 40 25 65 190216 G 4 0 4 A 44 46 90 190238 G 4 16 20 A 44 26 70 190331 G 1 0 1 A 47 44 91 190449 T 4 17 21 A 42 27 69 190471 A 3 0 3 C 43 44 87 190557 C 1 0 1 T 45 42 87 190655 C 4 11 15 G 42 21 63 191112 - 21 19 40 + 27 23 50 191115 A 0 3 3 G 48 39 87 191267 A 16 23 39 G 32 19 51 191275 T 21 19 40 G 27 23 50 191719 T 0 3 3 G 48 43 91 192107 C 18 15 33 T 26 23 49 192291 C 2 0 2 T 46 44 90 192614 G 3 3 6 C 45 41 86 192642 G 1 0 1 A 47 46 93 193279 G 20 21 41 A 26 25 51 193319 C 20 21 41 T 26 25 51 193448 T 3 0 3 C 45 46 91 193649 T 17 24 41 C 31 22 53 193772 T 21 20 41 C 27 26 53 195085 G 1 0 1 A 45 38 83 195434 T 1 0 1 C 43 46 89 Note: AD: African_Descent ED: European_Descent Total: All_population pop : population Diallelic insertion/deletion polymorphisms are represented as: + : insertion allele - : deletion allele The + (inserted) allele for each site is listed below: 003910: g 004232: C 004559: CTCATCCCTCCCTGA 014886: taa 015594: t 016229: t 017339: t 027788: TTATA 029201: a 029889: ttcta 047085: taaa 047116: t 047535: actta 053564: a 055972: aatt 073975: a 105391: tct 140539: c 171352: a 191112: ag